View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14572_low_1 (Length: 976)
Name: NF14572_low_1
Description: NF14572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14572_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 808; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 808; E-Value: 0
Query Start/End: Original strand, 10 - 959
Target Start/End: Complemental strand, 41691205 - 41690277
Alignment:
| Q |
10 |
ctgatatgaatgaaaatggattcagattcttggattggaaatgtgtgctgatactatggtgggagatgagatgagaaggggaatatccgggggagnnnnn |
109 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41691205 |
ctgatatgaatgaaaatggattcagattcttggattggaaatgtgtgctgatactatggtgggagatgagatgagaaggggaatatccgggggagaaaaa |
41691106 |
T |
|
| Q |
110 |
nngcggttaactacgggtatgagaagataattctaccaaaagttactaacgacaaaacgttatgatctgtttggtttaagaaaacgttttctgttttcac |
209 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41691105 |
aagcggttaactacgggtatg---------------------ttactaacgacaaaacgttatgatctgtttggtttaagaaaacgttttctgttttcac |
41691027 |
T |
|
| Q |
210 |
ttttaattgtaaattgtccatgtttaattatattttcaaagatttgtacaagatacagtgaaaacagtcaatttaaacattttctnnnnnnnctaattta |
309 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
41691026 |
ttttaattgtaaattgtccatgtttaattatattttcaaagatttgtacaagatacagtgaaaacagtcaatttaaacattttctaaaaaaactaattta |
41690927 |
T |
|
| Q |
310 |
accttaggccttgtttgtataaacggcttaattaagcacgcaggttatcatatacgtgtttatatataggctatttctataatgttttaaagtaagttgt |
409 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
41690926 |
accttaggccttgtttgtataaatggcttaattaagcacgcaggttatcatatacgtgtttatatataggctatttctataatgttttcaagtaagttgt |
41690827 |
T |
|
| Q |
410 |
tttcataagcaatctgaagaatttaaggaaataagttgaaaactggttatgaacaagtctttcaaaagctcttctttgtccaatttcctcaagcagtgtc |
509 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
41690826 |
tttcataagcaatctgaagaatttaaggaaataagtggaaaactggttatgaacaagtctttcaaaagctcttctttgtccaattttctcaagcagtgtc |
41690727 |
T |
|
| Q |
510 |
agtgtaaaatgcaggtgagatgctggtaggacctgcaaaagttttcttaatggatgagatctcgaccggtctagatagttctacaaccttccaaatagtc |
609 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41690726 |
agtgtaaaatgcaggtgagatgctggtaggacctgcaaaagttttcttaatggatgagatctcgaccggtctagatagttctacaaccttccaaatagtc |
41690627 |
T |
|
| Q |
610 |
agattcttgagacagctagttcatatcatggatgttacaatgataatctctcttttacaacctgcaccagaaacatttgatctttttgatgacataatct |
709 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41690626 |
agattcttgagacagctagttcatatcatggatgttacaatgataatctctcttttacaacctgcaccagaaacatttgatctttttgatgacataatct |
41690527 |
T |
|
| Q |
710 |
tactttcagaaggtcagattgtctaccaaggtcctcgcgtacacgttctcaattttttcgagagcgttggattcaaatgcccggaaaggaaaggagttgc |
809 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
41690526 |
tactttcagaaggtcagattgtctaccaaggtcctcgcgaacacgttctcaatttttttgagagcgttggattcaaatgcccggaaaggaaaggagttgc |
41690427 |
T |
|
| Q |
810 |
agatttcttacaagaggttacttctagaaaggatcaagagcagtactggttcataagggacaaaccataccattatatcagcgttcccgaatttgtaact |
909 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |
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| T |
41690426 |
agatttcttacaagaggttacttctagaaaggatcaagagcagtactggttcataagggacaaaacataccattatatcagcgttcccgagtttgtaact |
41690327 |
T |
|
| Q |
910 |
cacttcaacaattatagcattggacaacagctttctgaagagctaggtgt |
959 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41690326 |
cacttcaacaattatagcattggacaacagctttctgaagagctaggtgt |
41690277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 120; E-Value: 7e-61
Query Start/End: Original strand, 517 - 932
Target Start/End: Original strand, 19539226 - 19539641
Alignment:
| Q |
517 |
aatgcaggtgagatgctggtaggacctgcaaaagttttcttaatggatgagatctcgaccggtctagatagttctacaaccttccaaatagtcagattct |
616 |
Q |
| |
|
||||||||||| ||| | |||||||||||||||| |||| ||||||| || || || ||| | |||||||| |||||||||||||| ||||| || |
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| T |
19539226 |
aatgcaggtgaaatgttagtaggacctgcaaaagcactctttatggatggaatttcaactggtttggatagttccacaaccttccaaattgtcaggttta |
19539325 |
T |
|
| Q |
617 |
tgagacagctagttcatatcatggatgttacaatgataatctctcttttacaacctgcaccagaaacatttgatctttttgatgacataatcttactttc |
716 |
Q |
| |
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|||| || | |||||||||| |||||| || ||||||||||| ||| | ||||||||||||||||||| | ||||||||||||||||| |||||||| |
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| T |
19539326 |
tgaggcaaatggttcatatcacggatgtcactatgataatctcacttctgcaacctgcaccagaaacatacaacctttttgatgacataatattactttc |
19539425 |
T |
|
| Q |
717 |
agaaggtcagattgtctaccaaggtcctcgcgtacacgttctcaattttttcgagagcgttggattcaaatgcccggaaaggaaaggagttgcagatttc |
816 |
Q |
| |
|
||||||| |||||||||| |||||||| | | ||||| ||||||| | | || || ||||||||||| |||||||||||| ||||||| || |
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| T |
19539426 |
agaaggtgagattgtctatcaaggtcccagggagagtgttctagatttttttcaaaatgtgggcttcaaatgcccagaaaggaaaggaattgcagacttt |
19539525 |
T |
|
| Q |
817 |
ttacaagaggttacttctagaaaggatcaagagcagtactggttcataagggacaaaccataccattatatcagcgttcccgaatttgtaactcacttca |
916 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||| |||||||| ||| || | ||| | || || || || ||||||| ||||||| |
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| T |
19539526 |
ttacaagaggtaacttctagaaaggatcaagagcagtactggttcagaagggacataccttatgaatatgttagtgtgcctgattttgtaatccacttca |
19539625 |
T |
|
| Q |
917 |
acaattatagcattgg |
932 |
Q |
| |
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||||||| || ||||| |
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| T |
19539626 |
acaattacagtattgg |
19539641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 33 - 96
Target Start/End: Original strand, 19538897 - 19538960
Alignment:
| Q |
33 |
agattcttggattggaaatgtgtgctgatactatggtgggagatgagatgagaaggggaatatc |
96 |
Q |
| |
|
|||||||||| ||||||| ||||||||||| | ||||||||||||| ||||||||||| ||||| |
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|
| T |
19538897 |
agattcttgggttggaaacgtgtgctgatattttggtgggagatgaaatgagaaggggcatatc |
19538960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 34 - 95
Target Start/End: Complemental strand, 19538039 - 19537978
Alignment:
| Q |
34 |
gattcttggattggaaatgtgtgctgatactatggtgggagatgagatgagaaggggaatat |
95 |
Q |
| |
|
||||||||| |||||||||||||||||| | ||||||||||||||| ||||||||| |||| |
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|
| T |
19538039 |
gattcttgggctggaaatgtgtgctgatattttggtgggagatgagaagagaaggggtatat |
19537978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 76; Significance: 1e-34; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 692 - 875
Target Start/End: Complemental strand, 43527136 - 43526954
Alignment:
| Q |
692 |
tttttgatgacataatcttactttcagaaggtcagattgtctaccaaggtcctcgcgtacacgttctcaattttttcgagagcgttggattcaaatgccc |
791 |
Q |
| |
|
||||||||| |||||| |||||||| |||||| |||||||||| ||||||||||| | ||||| ||||||| | || || || ||||||||||| |
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| T |
43527136 |
tttttgatgtcataatattactttccgaaggtgagattgtctatcaaggtcctcgggagagtgttctagatttttttcaaagtgtgggcttcaaatgccc |
43527037 |
T |
|
| Q |
792 |
ggaaaggaaaggagttgcagatttcttacaagaggttacttctagaaaggatcaagagcagtactggttcataagggacaaacc |
875 |
Q |
| |
|
|||||||||| | ||||||| || ||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
43527036 |
agaaaggaaagaa-ttgcagactttttacaagaggtaacttctagaaaggatcaagagcagtactggttcagaagggacaaacc |
43526954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 517 - 705
Target Start/End: Original strand, 43526702 - 43526890
Alignment:
| Q |
517 |
aatgcaggtgagatgctggtaggacctgcaaaagttttcttaatggatgagatctcgaccggtctagatagttctacaaccttccaaatagtcagattct |
616 |
Q |
| |
|
||||||||||| ||| | |||||||||||||||| |||| ||||||| || || || ||| | |||||||| |||||||||||||| ||||| || |
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|
| T |
43526702 |
aatgcaggtgaaatgttagtaggacctgcaaaagcactctttatggatggaatttcaactggtttggatagttccacaaccttccaaattgtcaggttta |
43526801 |
T |
|
| Q |
617 |
tgagacagctagttcatatcatggatgttacaatgataatctctcttttacaacctgcaccagaaacatttgatctttttgatgacata |
705 |
Q |
| |
|
|||| | | ||||||||| ||||||||| | ||||||||| ||| | ||||||||||||||||||| | | ||||||||||||||| |
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|
| T |
43526802 |
tgaggtaaatgtttcatatcacggatgttactacgataatctcacttctgcaacctgcaccagaaacatataacctttttgatgacata |
43526890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 1e-19; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 526 - 740
Target Start/End: Complemental strand, 42135827 - 42135613
Alignment:
| Q |
526 |
gagatgctggtaggacctgcaaaagttttcttaatggatgagatctcgaccggtctagatagttctacaaccttccaaatagtcagattcttgagacagc |
625 |
Q |
| |
|
||||||||||||||||| |||||||| | || |||||||| || || || || |||||||||| || || || |||||| || ||| ||| ||| |
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|
| T |
42135827 |
gagatgctggtaggaccagcaaaagtactgttcatggatgaaatatcaacaggattagatagttcaaccacttttcaaataaccaagttcatgaaacaaa |
42135728 |
T |
|
| Q |
626 |
tagttcatatcatggatgttacaatgataatctctcttttacaacctgcaccagaaacatttgatctttttgatgacataatcttactttcagaaggtca |
725 |
Q |
| |
|
| ||||| || | ||||| |||||| | || |||||| ||||||| |||||||| |||||||| || ||||||||||| ||| |||||||||||||||| |
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|
| T |
42135727 |
tggttcacatattagatgtaacaatggtgatttctcttctacaaccagcaccagagacatttgaactctttgatgacattatcctactttcagaaggtca |
42135628 |
T |
|
| Q |
726 |
gattgtctaccaagg |
740 |
Q |
| |
|
||||| |||||||| |
|
|
| T |
42135627 |
aattgtataccaagg |
42135613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 661 - 743
Target Start/End: Complemental strand, 42175944 - 42175862
Alignment:
| Q |
661 |
cttttacaacctgcaccagaaacatttgatctttttgatgacataatcttactttcagaaggtcagattgtctaccaaggtcc |
743 |
Q |
| |
|
|||||||| || |||||||| |||||||| |||||||| ||||| || |||||||||||||||| ||||| || |||||||| |
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|
| T |
42175944 |
cttttacagccagcaccagagacatttgaactttttgacgacattattctactttcagaaggtcaaattgtatatcaaggtcc |
42175862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 658 - 740
Target Start/End: Complemental strand, 42156775 - 42156693
Alignment:
| Q |
658 |
tctcttttacaacctgcaccagaaacatttgatctttttgatgacataatcttactttcagaaggtcagattgtctaccaagg |
740 |
Q |
| |
|
||||||||||| || |||||||| |||||||| || ||||| ||||| || |||||||||||||||| ||||| || ||||| |
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|
| T |
42156775 |
tctcttttacagccagcaccagagacatttgaactctttgacgacattattctactttcagaaggtcaaattgtatatcaagg |
42156693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 407 - 465
Target Start/End: Complemental strand, 35394561 - 35394502
Alignment:
| Q |
407 |
tgttttcataagcaatct-gaagaatttaaggaaataagttgaaaactggttatgaacaa |
465 |
Q |
| |
|
||||||||||||| |||| |||||||||| | ||||||||||||||| | |||||||||| |
|
|
| T |
35394561 |
tgttttcataagctatcttgaagaatttatgaaaataagttgaaaacagcttatgaacaa |
35394502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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