View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14572_low_16 (Length: 498)

Name: NF14572_low_16
Description: NF14572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14572_low_16
NF14572_low_16
[»] chr6 (2 HSPs)
chr6 (1-469)||(34086277-34086744)
chr6 (66-165)||(24980242-24980339)
[»] scaffold0620 (1 HSPs)
scaffold0620 (1-257)||(1-257)
[»] chr4 (13 HSPs)
chr4 (61-165)||(35295843-35295946)
chr4 (61-168)||(11133416-11133522)
chr4 (62-168)||(3317420-3317527)
chr4 (62-120)||(12096074-12096132)
chr4 (62-120)||(50392068-50392126)
chr4 (62-120)||(30680749-30680807)
chr4 (62-120)||(43413303-43413360)
chr4 (96-165)||(45474597-45474666)
chr4 (78-142)||(20216760-20216824)
chr4 (71-141)||(11696454-11696524)
chr4 (68-141)||(5587662-5587734)
chr4 (92-120)||(7617745-7617773)
chr4 (1-37)||(34816820-34816856)
[»] chr5 (8 HSPs)
chr5 (62-123)||(13647173-13647234)
chr5 (63-137)||(19897150-19897224)
chr5 (65-161)||(22931363-22931459)
chr5 (62-120)||(34818455-34818513)
chr5 (75-139)||(8489272-8489336)
chr5 (129-168)||(19899019-19899058)
chr5 (72-142)||(5589230-5589300)
chr5 (62-94)||(2825831-2825863)
[»] chr8 (8 HSPs)
chr8 (65-168)||(33304970-33305073)
chr8 (62-120)||(14507470-14507528)
chr8 (62-120)||(21636527-21636585)
chr8 (62-120)||(10475322-10475380)
chr8 (62-116)||(41872691-41872745)
chr8 (65-168)||(31910486-31910590)
chr8 (71-165)||(30610786-30610880)
chr8 (70-131)||(9300868-9300929)
[»] chr7 (9 HSPs)
chr7 (65-165)||(11267700-11267800)
chr7 (62-118)||(42310282-42310338)
chr7 (62-120)||(1705830-1705888)
chr7 (62-120)||(38821326-38821384)
chr7 (62-122)||(47585766-47585826)
chr7 (86-165)||(33324073-33324152)
chr7 (62-116)||(40745888-40745942)
chr7 (61-141)||(47587813-47587888)
chr7 (65-118)||(24096839-24096892)
[»] chr3 (15 HSPs)
chr3 (62-120)||(13595353-13595411)
chr3 (62-120)||(41537501-41537559)
chr3 (62-120)||(22461104-22461162)
chr3 (62-116)||(38401072-38401126)
chr3 (62-120)||(50151715-50151772)
chr3 (66-117)||(22524898-22524949)
chr3 (65-143)||(54026713-54026791)
chr3 (62-114)||(42677889-42677941)
chr3 (65-141)||(9193246-9193322)
chr3 (62-103)||(25095686-25095727)
chr3 (68-141)||(50174050-50174123)
chr3 (65-165)||(23045459-23045558)
chr3 (62-116)||(3078904-3078957)
chr3 (68-141)||(25543307-25543380)
chr3 (85-114)||(52859096-52859125)
[»] chr1 (8 HSPs)
chr1 (62-120)||(8622270-8622328)
chr1 (62-120)||(11827983-11828041)
chr1 (62-118)||(27666395-27666451)
chr1 (62-112)||(1750074-1750124)
chr1 (62-120)||(27581656-27581714)
chr1 (62-114)||(27760362-27760414)
chr1 (70-141)||(49952560-49952631)
chr1 (2-47)||(49952662-49952707)
[»] chr2 (8 HSPs)
chr2 (62-120)||(10836760-10836818)
chr2 (62-120)||(24745812-24745870)
chr2 (62-118)||(41827998-41828054)
chr2 (65-162)||(4663013-4663111)
chr2 (61-123)||(45506858-45506920)
chr2 (67-120)||(25557137-25557190)
chr2 (61-103)||(23873522-23873564)
chr2 (96-161)||(40957092-40957157)
[»] scaffold0449 (1 HSPs)
scaffold0449 (113-165)||(5669-5721)


Alignment Details
Target: chr6 (Bit Score: 449; Significance: 0; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 1 - 469
Target Start/End: Complemental strand, 34086744 - 34086277
Alignment:
Q  1 cacaaacccaaataaaaatatttgggtacacacacaaaaccaaaaaattacaacgtgaaccaatatatcaattgatgtgactaaatactttttatttaat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |    
T  34086744 cacaaacccaaataaaaatatttgggtacacacacaaaaccaaaaaattacagcgtgaaccaatatatcaattgatgtgactaaatactttttattta-t 34086646  T
Q  101 tttgttagttttatgtgagtgtgcctaaataatatttatttagagttgtgtcaatgaaagacttttccgccccgatcataggactgcaacgtgaatcaat 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  34086645 tttgttagttttatgtgagtgtgcctaaataatatttatttagagttgtgtcaatgaaagtcttttccgccccgatcataggactgcaacgtgaatcaat 34086546  T
Q  201 cctacgaccacaatctgaatcagcccctaagacaaaacatgatgaaccattacataagatcaaacatgatgaactagtttaaggaaaaacttgcaccact 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34086545 cctacgaccacaatctgaatcagcccctaagacaaaacatgatgaaccattacataagatcaaacatgatgaactagtttaaggaaaaacttgcaccact 34086446  T
Q  301 agttcctaagacaaaacatgcaaaagtagttaattacaaaggttgatttcaccatattaagaaggagtgggaaggactgtatattttaattttggaccta 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34086445 agttcctaagacaaaacatgcaaaagtagttaattacaaaggttgatttcaccatattaagaaggagtgggaaggactgtatattttaattttggaccta 34086346  T
Q  401 tcaaacttagtgcacctcaaactgaactcaaagccaattcaagtttatgatgatgaacctaaagataga 469  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  34086345 tcaaacttagtgcacctcaaactgaactcaaagccaattcaagtttatgatgatgagcctaaagataga 34086277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 66 - 165
Target Start/End: Complemental strand, 24980339 - 24980242
Alignment:
Q  66 tatcaattgatgtgactaaatactttttatttaattttgttagttttatgtgagtgtgcctaaataatatttatttagagttgtgtcaatgaaagacttt 165  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | |||||||| ||||||||||||    
T  24980339 tatcaattgatgtgagtaaatactttttatttaattttgttagttttatgtga-tgtgcctaaataatatttatttggggttgtgtc-atgaaagacttt 24980242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0620 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: scaffold0620
Description:

Target: scaffold0620; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 257 - 1
Alignment:
Q  1 cacaaacccaaataaaaatatttgggtacacacacaaaaccaaaaaattacaacgtgaaccaatatatcaattgatgtgactaaatactttttatttaat 100  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||    
T  257 cacaaacccaaataaaaatatttgggtacacacacaaaatcaaaaaattataacgtgaaccaatatatcaattgatgtgactaaatattttttatttaat 158  T
Q  101 tttgttagttttatgtgagtgtgcctaaataatatttatttagagttgtgtcaatgaaagacttttccgccccgatcataggactgcaacgtgaatcaat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  157 tttgttagttttatgtgagtgtgcctaaataatatttatttagagttgtgtcaatgaaagacttttccgccccaatcataggactgcaacgtgaatcaat 58  T
Q  201 cctacgaccacaatctgaatcagcccctaagacaaaacatgatgaaccattacataa 257  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  57 cctacgaccacaatctgaatcagcccctaagacaaaacatgatcaaccattacataa 1  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 77; Significance: 2e-35; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 61 - 165
Target Start/End: Original strand, 35295843 - 35295946
Alignment:
Q  61 caatatatcaattgatgtgactaaatactttttatttaattttgttagttttatgtgagtgtgcctaaataatatttatttagagttgtgtcaatgaaag 160  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||| ||||||     
T  35295843 caatatatcaattgatgtgactgaatactttttatttaattttgttagttttatgtgagtgtgcccaaataatatttattt-gagatgtgtccatgaaaa 35295941  T
Q  161 acttt 165  Q
    |||||    
T  35295942 acttt 35295946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 61 - 168
Target Start/End: Original strand, 11133416 - 11133522
Alignment:
Q  61 caatatatcaattgatgtgactaaatactttttatttaattttgttagttttatgtgagtgtgcctaaataatatttatttagagttgtgtcaatgaaag 160  Q
    ||||| |||||||||||||| |||||| ||||||||| ||||  ||||||||||||||||||| ||||||||||||||||  | |||||||| |||||||    
T  11133416 caataaatcaattgatgtgattaaatattttttattttattta-ttagttttatgtgagtgtgtctaaataatatttattcggtgttgtgtctatgaaag 11133514  T
Q  161 acttttcc 168  Q
    ||||||||    
T  11133515 acttttcc 11133522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 62 - 168
Target Start/End: Original strand, 3317420 - 3317527
Alignment:
Q  62 aatatatcaattgatgtgactaaatactttt-tatttaattttgttagttttatgtgagtgtgcctaaataatatttatttagagttgtgtcaatgaaag 160  Q
    ||||||||||||||||| |||||||  |||| |||||||||||||||||||||| ||||| || | ||||||||||||||| | ||||| || |||||||    
T  3317420 aatatatcaattgatgtaactaaatttttttttatttaattttgttagttttatatgagtatgtccaaataatatttatttggggttgtctctatgaaag 3317519  T
Q  161 acttttcc 168  Q
    ||||||||    
T  3317520 acttttcc 3317527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 62 - 120
Target Start/End: Original strand, 12096074 - 12096132
Alignment:
Q  62 aatatatcaattgatgtgactaaatactttttatttaattttgttagttttatgtgagt 120  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  12096074 aatatatcaattgatgtgattaaatactttttatttaattttgttagttttatgtgagt 12096132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 62 - 120
Target Start/End: Original strand, 50392068 - 50392126
Alignment:
Q  62 aatatatcaattgatgtgactaaatactttttatttaattttgttagttttatgtgagt 120  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  50392068 aatatatcaattgatatgactaaatactttttatttaattttgttagttttatgtgagt 50392126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 62 - 120
Target Start/End: Complemental strand, 30680807 - 30680749
Alignment:
Q  62 aatatatcaattgatgtgactaaatactttttatttaattttgttagttttatgtgagt 120  Q
    ||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  30680807 aatatatcaattgatttgactaaatactttttattcaattttgttagttttatgtgagt 30680749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 62 - 120
Target Start/End: Complemental strand, 43413360 - 43413303
Alignment:
Q  62 aatatatcaattgatgtgactaaatactttttatttaattttgttagttttatgtgagt 120  Q
    ||||||||| |||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  43413360 aatatatcatttgatgtgacgaaatactttttatttaa-tttgttagttttatgtgagt 43413303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 96 - 165
Target Start/End: Original strand, 45474597 - 45474666
Alignment:
Q  96 ttaattttgttagttttatgtgagtgtgcctaaataatatttatttagagttgtgtcaatgaaagacttt 165  Q
    |||||||| |||||||||||| | | || |||||||||||||||||||||||||||  ||||||||||||    
T  45474597 ttaattttattagttttatgtaaatctgtctaaataatatttatttagagttgtgttgatgaaagacttt 45474666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 78 - 142
Target Start/End: Original strand, 20216760 - 20216824
Alignment:
Q  78 tgactaaatactttttatttaattttgttagttttatgtgagtgtgcctaaataatatttattta 142  Q
    |||||||||||||||||||||||||||||| || ||||||||||||   |||| |||||||||||    
T  20216760 tgactaaatactttttatttaattttgttaattgtatgtgagtgtgttcaaatcatatttattta 20216824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 71 - 141
Target Start/End: Original strand, 11696454 - 11696524
Alignment:
Q  71 attgatgtgactaaatactttttatttaattttgttagttttatgtgagtgtgcctaaataatatttattt 141  Q
    |||||||| |||||||||||||  || ||||||||| |||| ||||||| |||||||||| ||||||||||    
T  11696454 attgatgtaactaaatacttttacttaaattttgttcgtttaatgtgagagtgcctaaatgatatttattt 11696524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 68 - 141
Target Start/End: Complemental strand, 5587734 - 5587662
Alignment:
Q  68 tcaattgatgtgactaaatactttttatttaattttgttagttttatgtgagtgtgcctaaataatatttattt 141  Q
    ||||||||| |||||||||| ||||| || |||||| | | ||| ||||||| ||||||||| |||||||||||    
T  5587734 tcaattgatttgactaaatattttttcttaaattttttca-tttcatgtgagggtgcctaaacaatatttattt 5587662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 92 - 120
Target Start/End: Original strand, 7617745 - 7617773
Alignment:
Q  92 ttatttaattttgttagttttatgtgagt 120  Q
    |||||||||||||||||||||||||||||    
T  7617745 ttatttaattttgttagttttatgtgagt 7617773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 34816856 - 34816820
Alignment:
Q  1 cacaaacccaaataaaaatatttgggtacacacacaa 37  Q
    ||||||||||||||||| ||||||||| |||||||||    
T  34816856 cacaaacccaaataaaagtatttgggtgcacacacaa 34816820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 62 - 123
Target Start/End: Original strand, 13647173 - 13647234
Alignment:
Q  62 aatatatcaattgatgtgactaaatactttttatttaattttgttagttttatgtgagtgtg 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13647173 aatatatcaattgatgtgactaaatactttttatttaattttgttagttttatgtgagtgtg 13647234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 63 - 137
Target Start/End: Original strand, 19897150 - 19897224
Alignment:
Q  63 atatatcaattgatgtgactaaatactttttatttaattttgttagttttatgtgagtgtgcctaaataatattt 137  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||| | |||||||||||    
T  19897150 atatatcaattgatgtgactaaatactttttatttaattttgttagttttatgtgtatgtgaccaaataatattt 19897224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 65 - 161
Target Start/End: Complemental strand, 22931459 - 22931363
Alignment:
Q  65 atatcaattgatgtgactaaatactttttatttaattttgttagttttatgtgagtgtgcctaaataatatttatttagagttgtgtcaatgaaaga 161  Q
    |||||| |||||||||||||||| ||||| ||||||||||||| ||||||||||||||  | ||||||||||||||| | |||||||| ||||||||    
T  22931459 atatcatttgatgtgactaaatattttttgtttaattttgttaattttatgtgagtgtatccaaataatatttatttggggttgtgtccatgaaaga 22931363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 62 - 120
Target Start/End: Complemental strand, 34818513 - 34818455
Alignment:
Q  62 aatatatcaattgatgtgactaaatactttttatttaattttgttagttttatgtgagt 120  Q
    ||||||| |||||||||||||||||||||||  |||| |||||||||||||||||||||    
T  34818513 aatatattaattgatgtgactaaatacttttattttatttttgttagttttatgtgagt 34818455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 75 - 139
Target Start/End: Complemental strand, 8489336 - 8489272
Alignment:
Q  75 atgtgactaaatactttttatttaattttgttagttttatgtgagtgtgcctaaataatatttat 139  Q
    |||||||||||||||||| |||| ||||||||| ||||| ||||||||| | ||||||| |||||    
T  8489336 atgtgactaaatacttttaatttgattttgttaattttacgtgagtgtgtccaaataatgtttat 8489272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 129 - 168
Target Start/End: Original strand, 19899019 - 19899058
Alignment:
Q  129 ataatatttatttagagttgtgtcaatgaaagacttttcc 168  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  19899019 ataatatttatttagagttgtgtctatgaaagacttttcc 19899058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 72 - 142
Target Start/End: Original strand, 5589230 - 5589300
Alignment:
Q  72 ttgatgtgactaaatactttttatttaattttgttagttttatgtgagtgtgcctaaataatatttattta 142  Q
    ||||| ||| |||||| ||||| ||||||||| ||  ||| ||||||| ||||||||||||||||||||||    
T  5589230 ttgatttgattaaatattttttttttaatttttttcatttcatgtgagggtgcctaaataatatttattta 5589300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 62 - 94
Target Start/End: Original strand, 2825831 - 2825863
Alignment:
Q  62 aatatatcaattgatgtgactaaatacttttta 94  Q
    |||||||||||||||||||||||||||||||||    
T  2825831 aatatatcaattgatgtgactaaatacttttta 2825863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 65 - 168
Target Start/End: Complemental strand, 33305073 - 33304970
Alignment:
Q  65 atatcaattgatgtgactaaatactttttatttaattttgttagttttatgtgagtgtgcctaaataatatttatttagagttgtgtcaatgaaagactt 164  Q
    ||||||||| |||||| |||||||||||||||||||||||||| ||| |||||||||| |  || |||||||||||||  ||||||| ||||||||||||    
T  33305073 atatcaattaatgtgattaaatactttttatttaattttgttaatttcatgtgagtgtactcaattaatatttatttaaggttgtgttaatgaaagactt 33304974  T
Q  165 ttcc 168  Q
    ||||    
T  33304973 ttcc 33304970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 62 - 120
Target Start/End: Original strand, 14507470 - 14507528
Alignment:
Q  62 aatatatcaattgatgtgactaaatactttttatttaattttgttagttttatgtgagt 120  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  14507470 aatatatcaattgatttgactaaatactttttatttaattttgttagttttatgtgagt 14507528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 62 - 120
Target Start/End: Original strand, 21636527 - 21636585
Alignment:
Q  62 aatatatcaattgatgtgactaaatactttttatttaattttgttagttttatgtgagt 120  Q
    ||||||||||||||||||| ||||||||||||||| | |||||||||||||||||||||    
T  21636527 aatatatcaattgatgtgattaaatactttttattgagttttgttagttttatgtgagt 21636585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 62 - 120
Target Start/End: Original strand, 10475322 - 10475380
Alignment:
Q  62 aatatatcaattgatgtgactaaatactttttatttaattttgttagttttatgtgagt 120  Q
    |||||||||| |||| ||| ||||||||||||||||||||||||||||||| |||||||    
T  10475322 aatatatcaaatgatttgattaaatactttttatttaattttgttagttttgtgtgagt 10475380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 62 - 116
Target Start/End: Original strand, 41872691 - 41872745
Alignment:
Q  62 aatatatcaattgatgtgactaaatactttttatttaattttgttagttttatgt 116  Q
    ||||||||||||||||||| |||||| |||| |||||||||||||||||||||||    
T  41872691 aatatatcaattgatgtgattaaatatttttcatttaattttgttagttttatgt 41872745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 65 - 168
Target Start/End: Complemental strand, 31910590 - 31910486
Alignment:
Q  65 atatcaattgatgtgactaaatacttttt-atttaattttgttagttttatgtgagtgtgcctaaataatatttatttagagttgtgtcaatgaaagact 163  Q
    ||||||||| |||||| |||||||||||| |||||||||||||| ||| | |||||||||   ||||||||||||||| | |||||||  || |||| ||    
T  31910590 atatcaatttatgtgattaaatacttttttatttaattttgttaatttcacgtgagtgtgttcaaataatatttatttggggttgtgttcattaaagcct 31910491  T
Q  164 tttcc 168  Q
    |||||    
T  31910490 tttcc 31910486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 71 - 165
Target Start/End: Complemental strand, 30610880 - 30610786
Alignment:
Q  71 attgatgtgactaaatactttttatttaattttgttagttttatgtgagtgtgcctaaataatatttatttagagttgtgtcaatgaaagacttt 165  Q
    |||||||||| |||||| ||||| |||||||||||| |||| |||| ||||||  ||||||||||| ||||||   |||||  ||||||||||||    
T  30610880 attgatgtgattaaataatttttgtttaattttgttggtttcatgtaagtgtgtgtaaataatattgatttaggtgtgtgttcatgaaagacttt 30610786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 70 - 131
Target Start/End: Complemental strand, 9300929 - 9300868
Alignment:
Q  70 aattgatgtgactaaat-actttttatttaattttgttagttttatgtgagtgtgcctaaata 131  Q
    ||||||||||||||||| | ||||  ||||||||| ||||||| |||||||||||||||||||    
T  9300929 aattgatgtgactaaattaattttgctttaatttttttagttt-atgtgagtgtgcctaaata 9300868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 65 - 165
Target Start/End: Original strand, 11267700 - 11267800
Alignment:
Q  65 atatcaattgatgtgactaaatactttttatttaattttgttagttttatgtgagtgtgcctaaataatatttatttagagttgtgtcaatgaaagactt 164  Q
    |||||| ||||||| |||||||||||||| ||||||||||||| |||||||||| ||| ||||| |||||||||||| | |||||||  |||||||||||    
T  11267700 atatcatttgatgtaactaaatactttttctttaattttgttaattttatgtgattgttcctaagtaatatttatttggggttgtgttcatgaaagactt 11267799  T
Q  165 t 165  Q
    |    
T  11267800 t 11267800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 62 - 118
Target Start/End: Complemental strand, 42310338 - 42310282
Alignment:
Q  62 aatatatcaattgatgtgactaaatactttttatttaattttgttagttttatgtga 118  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  42310338 aatatatcaattgatatgactaaatactttttatttaattttgttagttttatgtga 42310282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 62 - 120
Target Start/End: Complemental strand, 1705888 - 1705830
Alignment:
Q  62 aatatatcaattgatgtgactaaatactttttatttaattttgttagttttatgtgagt 120  Q
    ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||    
T  1705888 aatatatcaattgatttaactaaatactttttatttaattttgttagttttatgtgagt 1705830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 62 - 120
Target Start/End: Complemental strand, 38821384 - 38821326
Alignment:
Q  62 aatatatcaattgatgtgactaaatactttttatttaattttgttagttttatgtgagt 120  Q
    ||||||||||||||| |||||||||||||||||||||||||||||| ||||| ||||||    
T  38821384 aatatatcaattgatatgactaaatactttttatttaattttgttaattttacgtgagt 38821326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 62 - 122
Target Start/End: Complemental strand, 47585826 - 47585766
Alignment:
Q  62 aatatatcaattgatgtgactaaatactttttatttaattttgttagttttatgtgagtgt 122  Q
    ||||||||||||||||||| ||||||||||||||||  |||||||||||||||||| ||||    
T  47585826 aatatatcaattgatgtgattaaatactttttatttgtttttgttagttttatgtgcgtgt 47585766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 86 - 165
Target Start/End: Complemental strand, 33324152 - 33324073
Alignment:
Q  86 tactttttatttaattttgttagttttatgtgagtgtgcctaaataatatttatttagagttgtgtcaatgaaagacttt 165  Q
    |||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||   |||||||   |||||||||||    
T  33324152 tactttttatttaattttgttaatttcatgtgagtgtgtctaaataatatttatttcaggttgtgttcgtgaaagacttt 33324073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 62 - 116
Target Start/End: Complemental strand, 40745942 - 40745888
Alignment:
Q  62 aatatatcaattgatgtgactaaatactttttatttaattttgttagttttatgt 116  Q
    ||||||||||||||| | | |||||||||||||||||||||||||||||||||||    
T  40745942 aatatatcaattgatataattaaatactttttatttaattttgttagttttatgt 40745888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 61 - 141
Target Start/End: Original strand, 47587813 - 47587888
Alignment:
Q  61 caatatatcaattgatgtgactaaatactttttatttaattttgttagttttatgtgagtgtgcctaaataatatttattt 141  Q
    ||||||||||||||||||||||||     ||||||||||||||||||||||||| | ||||||   |||||||||||||||    
T  47587813 caatatatcaattgatgtgactaa-----ttttatttaattttgttagttttatattagtgtgttcaaataatatttattt 47587888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 65 - 118
Target Start/End: Complemental strand, 24096892 - 24096839
Alignment:
Q  65 atatcaattgatgtgactaaatactttttatttaattttgttagttttatgtga 118  Q
    |||||| ||||||||| |||||||||||||||||||||||||| ||| ||||||    
T  24096892 atatcatttgatgtgattaaatactttttatttaattttgttaatttcatgtga 24096839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 62 - 120
Target Start/End: Original strand, 13595353 - 13595411
Alignment:
Q  62 aatatatcaattgatgtgactaaatactttttatttaattttgttagttttatgtgagt 120  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  13595353 aatatatcaattgatatgactaaatactttttatttaattttgttagttttatgtgagt 13595411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 62 - 120
Target Start/End: Complemental strand, 41537559 - 41537501
Alignment:
Q  62 aatatatcaattgatgtgactaaatactttttatttaattttgttagttttatgtgagt 120  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  41537559 aatatatcaattgatttgactaaatactttttatttaattttgttagttttatgtgagt 41537501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 62 - 120
Target Start/End: Original strand, 22461104 - 22461162
Alignment:
Q  62 aatatatcaattgatgtgactaaatactttttatttaattttgttagttttatgtgagt 120  Q
    ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||    
T  22461104 aatatatcaattgatttaactaaatactttttatttaattttgttagttttatgtgagt 22461162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 62 - 116
Target Start/End: Original strand, 38401072 - 38401126
Alignment:
Q  62 aatatatcaattgatgtgactaaatactttttatttaattttgttagttttatgt 116  Q
    |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||    
T  38401072 aatatatcaattgacgtgactaaatactttttatttaattttgttaattttatgt 38401126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 62 - 120
Target Start/End: Complemental strand, 50151772 - 50151715
Alignment:
Q  62 aatatatcaattgatgtgactaaatactttttatttaattttgttagttttatgtgagt 120  Q
    ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||    
T  50151772 aatatatcaattgatgtgattaaata-tttttatttaattttgttagttttatgtgagt 50151715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 66 - 117
Target Start/End: Original strand, 22524898 - 22524949
Alignment:
Q  66 tatcaattgatgtgactaaatactttttatttaattttgttagttttatgtg 117  Q
    ||||||||||| |||||||||| |||||||||||||||||||||||||||||    
T  22524898 tatcaattgatttgactaaatattttttatttaattttgttagttttatgtg 22524949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 65 - 143
Target Start/End: Original strand, 54026713 - 54026791
Alignment:
Q  65 atatcaattgatgtgactaaatactttttatttaattttgttagttttatgtgagtgtgcctaaataatatttatttag 143  Q
    |||||| ||||||||| |||||| ||||| |||||||| |||| ||| || |||||||| |||||||||||||||||||    
T  54026713 atatcatttgatgtgattaaatattttttgtttaatttcgttaatttcatatgagtgtgtctaaataatatttatttag 54026791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 62 - 114
Target Start/End: Complemental strand, 42677941 - 42677889
Alignment:
Q  62 aatatatcaattgatgtgactaaatactttttatttaattttgttagttttat 114  Q
    ||||||||||||||| ||| ||||||| |||||||||||||||||||||||||    
T  42677941 aatatatcaattgatatgattaaatacattttatttaattttgttagttttat 42677889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 65 - 141
Target Start/End: Original strand, 9193246 - 9193322
Alignment:
Q  65 atatcaattgatgtgactaaatactttttatttaattttgttagttttatgtgagtgtgcctaaataatatttattt 141  Q
    |||| ||||||| || |||||||||||||||||| |||| ||  ||| ||||||||||  |||||||||||||||||    
T  9193246 atattaattgatatggctaaatactttttatttagttttattgatttcatgtgagtgtatctaaataatatttattt 9193322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 62 - 103
Target Start/End: Complemental strand, 25095727 - 25095686
Alignment:
Q  62 aatatatcaattgatgtgactaaatactttttatttaatttt 103  Q
    ||||||||||||||| ||| ||||||||||||||||||||||    
T  25095727 aatatatcaattgatttgattaaatactttttatttaatttt 25095686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 68 - 141
Target Start/End: Original strand, 50174050 - 50174123
Alignment:
Q  68 tcaattgatgtgactaaatactttttatttaattttgttagttttatgtgagtgtgcctaaataatatttattt 141  Q
    |||||||||||||||||||  ||||| || |||||||||  ||| | |||||||||||||||||| ||| ||||    
T  50174050 tcaattgatgtgactaaattatttttcttaaattttgttcatttcacgtgagtgtgcctaaataagattgattt 50174123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 65 - 165
Target Start/End: Original strand, 23045459 - 23045558
Alignment:
Q  65 atatcaattgatgtgactaaatactttttatttaattttgttagttttatgtgagtgtgcctaaataatatttatttagagttgtgtcaatgaaagactt 164  Q
    |||| ||||||||||| | |||| ||||| ||| ||||| | | ||||| ||||||||||| ||||||||||||||| | ||| |||  |||||||||||    
T  23045459 atataaattgatgtgattgaata-tttttgttttattttataaattttacgtgagtgtgcccaaataatatttatttggggttatgtttatgaaagactt 23045557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 62 - 116
Target Start/End: Original strand, 3078904 - 3078957
Alignment:
Q  62 aatatatcaattgatgtgactaaatactttttatttaattttgttagttttatgt 116  Q
    |||||| ||||| |||||| |||||| ||||||||||||||| ||||||||||||    
T  3078904 aatataccaatt-atgtgattaaatattttttatttaattttattagttttatgt 3078957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 68 - 141
Target Start/End: Original strand, 25543307 - 25543380
Alignment:
Q  68 tcaattgatgtgactaaatactttttatttaattttgttagttttatgtgagtgtgcctaaataatatttattt 141  Q
    |||||||||||||||| ||  ||||| || ||| |||||  ||||||||||| ||||| |||||||||| ||||    
T  25543307 tcaattgatgtgactagattatttttcttaaatattgttccttttatgtgagggtgcccaaataatattgattt 25543380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 85 - 114
Target Start/End: Complemental strand, 52859125 - 52859096
Alignment:
Q  85 atactttttatttaattttgttagttttat 114  Q
    ||||||||||||||||||||||||||||||    
T  52859125 atactttttatttaattttgttagttttat 52859096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 62 - 120
Target Start/End: Complemental strand, 8622328 - 8622270
Alignment:
Q  62 aatatatcaattgatgtgactaaatactttttatttaattttgttagttttatgtgagt 120  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  8622328 aatatatcaattgatttgactaaatactttttatttaattttgttagttttatgtgagt 8622270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 62 - 120
Target Start/End: Original strand, 11827983 - 11828041
Alignment:
Q  62 aatatatcaattgatgtgactaaatactttttatttaattttgttagttttatgtgagt 120  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  11827983 aatatatcaattgatttgactaaatactttttatttaattttgttagttttatgtgagt 11828041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 62 - 118
Target Start/End: Original strand, 27666395 - 27666451
Alignment:
Q  62 aatatatcaattgatgtgactaaatactttttatttaattttgttagttttatgtga 118  Q
    |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  27666395 aatatagcaattaatgtgactaaatactttttatttaattttgttagttttatgtga 27666451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 62 - 112
Target Start/End: Original strand, 1750074 - 1750124
Alignment:
Q  62 aatatatcaattgatgtgactaaatactttttatttaattttgttagtttt 112  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  1750074 aatatatcaattgatgtgactaaatactttttgtttaattttgttagtttt 1750124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 62 - 120
Target Start/End: Original strand, 27581656 - 27581714
Alignment:
Q  62 aatatatcaattgatgtgactaaatactttttatttaattttgttagttttatgtgagt 120  Q
    ||||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||||    
T  27581656 aatatatcaattgatttgattaaatactttttatttaattttgttaattttatgtgagt 27581714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 62 - 114
Target Start/End: Original strand, 27760362 - 27760414
Alignment:
Q  62 aatatatcaattgatgtgactaaatactttttatttaattttgttagttttat 114  Q
    ||||||||||||||||||| ||||||||||||||| |||||||||||||||||    
T  27760362 aatatatcaattgatgtgattaaatactttttattgaattttgttagttttat 27760414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 70 - 141
Target Start/End: Complemental strand, 49952631 - 49952560
Alignment:
Q  70 aattgatgtgactaaatactttttatttaattttgttagttttatgtgagtgtgcctaaataatatttattt 141  Q
    |||||||||||||||||||||||  || |||||||||  ||| ||||||| || ||||||| ||||||||||    
T  49952631 aattgatgtgactaaatacttttacttaaattttgttcatttaatgtgagagtacctaaatgatatttattt 49952560  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 47
Target Start/End: Complemental strand, 49952707 - 49952662
Alignment:
Q  2 acaaacccaaataaaaatatttgggtacacacacaaaaccaaaaaa 47  Q
    ||||||||||||||| ||||||| | | ||||||||||||||||||    
T  49952707 acaaacccaaataaatatatttgagcatacacacaaaaccaaaaaa 49952662  T

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Target: chr2 (Bit Score: 51; Significance: 5e-20; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 62 - 120
Target Start/End: Complemental strand, 10836818 - 10836760
Alignment:
Q  62 aatatatcaattgatgtgactaaatactttttatttaattttgttagttttatgtgagt 120  Q
    ||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||    
T  10836818 aatatatcaattgatatgactaaatactttttatttaattttgttaattttatgtgagt 10836760  T

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Target: chr2; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 62 - 120
Target Start/End: Original strand, 24745812 - 24745870
Alignment:
Q  62 aatatatcaattgatgtgactaaatactttttatttaattttgttagttttatgtgagt 120  Q
    ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||    
T  24745812 aatatatcaattgatgtaactaaatactttttatttaatattgttagttttatgtgagt 24745870  T

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Target: chr2; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 62 - 118
Target Start/End: Complemental strand, 41828054 - 41827998
Alignment:
Q  62 aatatatcaattgatgtgactaaatactttttatttaattttgttagttttatgtga 118  Q
    ||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||    
T  41828054 aatatatcaattgatttgactaaatactttttatttaattttgttaattttatgtga 41827998  T

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Target: chr2; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 65 - 162
Target Start/End: Original strand, 4663013 - 4663111
Alignment:
Q  65 atatcaattgatgtgactaaatactttttatttaattttgttagttttatgtgagtgtg-cctaaataatatttatttagagttgtgtcaatgaaagac 162  Q
    ||||||||| ||||||||||||||||||||||||||||||||| ||| ||  ||||||| || ||| ||||||||||| | |||||||  |||||||||    
T  4663013 atatcaattcatgtgactaaatactttttatttaattttgttaatttcatacgagtgtgcccaaaaaaatatttatttcgggttgtgttcatgaaagac 4663111  T

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Target: chr2; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 61 - 123
Target Start/End: Original strand, 45506858 - 45506920
Alignment:
Q  61 caatatatcaattgatgtgactaaatactttttatttaattttgttagttttatgtgagtgtg 123  Q
    |||||||||||||||||||| | |||||||||||||| ||||| |||||||||||||||||||    
T  45506858 caatatatcaattgatgtgattgaatactttttattttattttattagttttatgtgagtgtg 45506920  T

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Target: chr2; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 67 - 120
Target Start/End: Original strand, 25557137 - 25557190
Alignment:
Q  67 atcaattgatgtgactaaatactttttatttaattttgttagttttatgtgagt 120  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  25557137 atcaattgatgtgactaaatactttttatttaattttgttaattttacgtgagt 25557190  T

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Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 61 - 103
Target Start/End: Complemental strand, 23873564 - 23873522
Alignment:
Q  61 caatatatcaattgatgtgactaaatactttttatttaatttt 103  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  23873564 caatatatcaattgatgtgactaaatactttttatttaatttt 23873522  T

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Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 96 - 161
Target Start/End: Original strand, 40957092 - 40957157
Alignment:
Q  96 ttaattttgttagttttatgtgagtgtgcctaaataatatttatttagagttgtgtcaatgaaaga 161  Q
    |||||||||||  ||  |||||| ||||||||||||||||| |||| ||| |||||||||||||||    
T  40957092 ttaattttgttcattacatgtgactgtgcctaaataatattgatttggagctgtgtcaatgaaaga 40957157  T

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Target: scaffold0449 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0449
Description:

Target: scaffold0449; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 113 - 165
Target Start/End: Original strand, 5669 - 5721
Alignment:
Q  113 atgtgagtgtgcctaaataatatttatttagagttgtgtcaatgaaagacttt 165  Q
    |||||||||||   ||||||||||||||| | |||||||| ||||||||||||    
T  5669 atgtgagtgtgttcaaataatatttatttggggttgtgtccatgaaagacttt 5721  T

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