View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14572_low_18 (Length: 485)
Name: NF14572_low_18
Description: NF14572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14572_low_18 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 422; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 17 - 466
Target Start/End: Complemental strand, 41424806 - 41424357
Alignment:
| Q |
17 |
cacagacaaagacaaatgctgcactaccactccatccaaacacacagcaagggcgtcacgttgtggtggtcctcttcacctcattgttttaaatttcatg |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41424806 |
cacagacaaagacaaatgctgcactaccactccgtccaaacacacagcaagggcgtcacgttgtggtggtcctcttcacctcattgttttaaatttcatg |
41424707 |
T |
|
| Q |
117 |
tgctgcggggaggcggaattttttattatttagtccttatcatgctattctttttcaattaattatgttaatttgaaatattcttttaaaaagcaaaact |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41424706 |
tgctgcggggaggcggaattttttattatttagtccttatcatgctattctttttcaattaattatgttaatttgaaatattcttttaaaaagcaaaact |
41424607 |
T |
|
| Q |
217 |
agttcattgaaattgaaaccgagaagaattaaacatgagacattgaacagaacatactttaaagtttcaagtcattataatggatttgttgatttgtaaa |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41424606 |
agttcattgaaattgaaaccgagaagaattaaacacgagacattgaacagaacatactttaaagtttcaagtcattataatggatttgttgatttgtaaa |
41424507 |
T |
|
| Q |
317 |
attaacatgtttttatagttttcacatttgtttgaaatcatggttaatgacagtttacaaacaacactcacgcttttgaacccgactaacggacagtgtt |
416 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |
|
|
| T |
41424506 |
attaacatgtttttatagttttcacatttgtttgaaatcatggttaatgacagtttacaaacaacactcacaattttgaacccgactaacgaacagtgtt |
41424407 |
T |
|
| Q |
417 |
gtgatatttaggtcagaggttggctcacgtcaacactattagtgttgttg |
466 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| | |||||||| |
|
|
| T |
41424406 |
gtgatatttaggtcagaggttggctcacgtcaacactataaatgttgttg |
41424357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University