View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14572_low_20 (Length: 466)
Name: NF14572_low_20
Description: NF14572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14572_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 421; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 22 - 454
Target Start/End: Complemental strand, 8974448 - 8974016
Alignment:
| Q |
22 |
tgggcaactttctgaaggacctcttgaactataaaaatccacgctaggagctggtttagcaccaaaagatgttatcttgaaagaaattttttctattgaa |
121 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8974448 |
tgggcaactttcagaaggacctcttgaactataaaaatccacgctaggagctggtttagcaccaaaagatgttatcttgaaagaaattttttctattgaa |
8974349 |
T |
|
| Q |
122 |
ctggagttagagttactttgtatgtaatctttgataatttctccattggtttggttaataatgatatatggaagctggaaccctaaaagttgtgatagat |
221 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
8974348 |
ctggagttagagttactttgtatgtaatctttgataatttctccattggtttggttaataatgatgtatggaagctggaaccctaaaagttgtgatagat |
8974249 |
T |
|
| Q |
222 |
tattttgtgaagtgtttgatataataacagctcctacaactattactgtaagcaaattagaaacttgatcaagaagagttccattcttgtcttcacagac |
321 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
8974248 |
tattttgtgaagtgtttgatataataacagctcctacaactattactgtaagcaaattagaaacttgatcaaaaagagttccattcttgtcttcacagac |
8974149 |
T |
|
| Q |
322 |
aacaatcttacttttcactttgattagttgtgtaatattgtcacacttacccatgaaaacaattggaatattactagcagagaagtttcctagataaaaa |
421 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8974148 |
aacaatcttacttttcactttgattagttgtgtaatattgtcacacttacccatgaaaacaattggaatattactagcagagaagtttcctagataaaaa |
8974049 |
T |
|
| Q |
422 |
gataagccagagagtgagactccattaccaagt |
454 |
Q |
| |
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||||||||||||||||||||||||||||||||| |
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| T |
8974048 |
gataagccagagagtgagactccattaccaagt |
8974016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 41 - 454
Target Start/End: Complemental strand, 8963033 - 8962620
Alignment:
| Q |
41 |
cctcttgaactataaaaatccacgctaggagctggtttagcaccaaaagatgttatcttgaaagaaattttttctattgaactggagttagagttacttt |
140 |
Q |
| |
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||||| ||||||||||||||||| ||||| |||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||| ||||||| | |
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| T |
8963033 |
cctctagaactataaaaatccaccctaggtactggtttagcaccaaaagatgtaatcttgaaagacattttttctattgaactagagttaaagttactat |
8962934 |
T |
|
| Q |
141 |
gtatgtaatctttgataatttctccattggtttggttaataatgatatatggaagctggaaccctaaaagttgtgatagattattttgtgaagtgtttga |
240 |
Q |
| |
|
||||||||||||||| ||||||||||| | |||||||||||||| |||||||| || ||| ||| || |||||||| || ||||| |||||||| |
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| T |
8962933 |
gtatgtaatctttgaccatttctccatttttctggttaataatgatggatggaagcaggtaccgtaagtcttctgatagatcatcttgtgttgtgtttga |
8962834 |
T |
|
| Q |
241 |
tataataacagctcctacaactattactgtaagcaaattagaaacttgatcaagaagagttccattcttgtcttcacagacaacaatcttacttttcact |
340 |
Q |
| |
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||||| || ||||||||||||| | || ||| || |||| ||| ||||| | |||| || |||||||||||||||| || ||||||| || |||||| |
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| T |
8962833 |
tataaaaatagctcctacaacttctgctttaaccacattataaatttgattagaaagactttcattcttgtcttcacaaaccacaatctcgctcttcact |
8962734 |
T |
|
| Q |
341 |
ttgattagttgtgtaatattgtcacacttacccatgaaaacaattggaatattactagcagagaagtttcctagataaaaagataagccagagagtgaga |
440 |
Q |
| |
|
||||||||| ||||| |||||||||| |||| |||||||||| |||||||||||||||||||||||||||| ||| |||| ||||| | |||||||| |
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| T |
8962733 |
ctgattagttctgtaaaattgtcacacatacctttgaaaacaatgggaatattactagcagagaagtttcctatataggaagagaagccggtgagtgaga |
8962634 |
T |
|
| Q |
441 |
ctccattaccaagt |
454 |
Q |
| |
|
|||||||||||||| |
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|
| T |
8962633 |
ctccattaccaagt |
8962620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 335 - 454
Target Start/End: Original strand, 8946351 - 8946470
Alignment:
| Q |
335 |
ttcactttgattagttgtgtaatattgtcacacttacccatgaaaacaattggaatattactagcagagaagtttcctagataaaaagataagccagaga |
434 |
Q |
| |
|
||||||||||||| || ||||| |||||| ||| |||||||||||||||||| | ||| ||||||||||| |||||||||||| ||| | || | || |
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| T |
8946351 |
ttcactttgattaattctgtaacattgtcgcacaaacccatgaaaacaattggcaaattgctagcagagaaatttcctagataattagaccaacctgtga |
8946450 |
T |
|
| Q |
435 |
gtgagactccattaccaagt |
454 |
Q |
| |
|
|||||||||||||||||||| |
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|
| T |
8946451 |
gtgagactccattaccaagt |
8946470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 236 - 454
Target Start/End: Original strand, 21687400 - 21687618
Alignment:
| Q |
236 |
tttgatataataacagctcctacaactattactgtaagcaaattagaaacttgatcaagaagagttccattcttgtcttcacagacaacaatcttacttt |
335 |
Q |
| |
|
|||||||||| |||| |||| |||||| || || || || |||| | | ||| ||| |||||||| |||| ||| ||||||| || |||||||| || | |
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| T |
21687400 |
tttgatataaaaacacctccaacaacttttgctttatacacattaaacatttgttcatgaagagtttcattattgccttcacaaaccacaatctttctct |
21687499 |
T |
|
| Q |
336 |
tcactttgattagttgtgtaatattgtcacacttacccatgaaaacaattggaatattactagcagagaagtttcctagataaaaagataagccagagag |
435 |
Q |
| |
|
||||| || ||| || | ||| |||||||||| ||||||| ||||||||||||| ||| |||||||||||||||||||||| ||||| || |||| ||| |
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|
| T |
21687500 |
tcactgtgtttaattctttaacattgtcacacatacccataaaaacaattggaaaattgttagcagagaagtttcctagatagaaagacaaaccagtgag |
21687599 |
T |
|
| Q |
436 |
tgagactccattaccaagt |
454 |
Q |
| |
|
||||||||||||||||||| |
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|
| T |
21687600 |
tgagactccattaccaagt |
21687618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 44 - 136
Target Start/End: Original strand, 21687214 - 21687306
Alignment:
| Q |
44 |
cttgaactataaaaatccacgctaggagctggtttagcaccaaaagatgttatcttgaaagaaattttttctattgaactggagttagagtta |
136 |
Q |
| |
|
||||| |||||||||||||| ||||| | || |||| |||| |||| |||| |||||||||| || ||| |||||||||| | |||||||||| |
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| T |
21687214 |
cttgagctataaaaatccacactaggtgttgatttaacaccgaaagctgttttcttgaaagacatgtttgctattgaactagcgttagagtta |
21687306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 34 - 105
Target Start/End: Original strand, 19375918 - 19375989
Alignment:
| Q |
34 |
tgaaggacctcttgaactataaaaatccacgctaggagctggtttagcaccaaaagatgttatcttgaaaga |
105 |
Q |
| |
|
|||||| |||||||||||||||| ||| || ||||| | ||||||| |||||||| |||| |||||||||| |
|
|
| T |
19375918 |
tgaaggccctcttgaactataaagatcaacactaggtgttggtttaacaccaaaaattgttttcttgaaaga |
19375989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 298 - 342
Target Start/End: Original strand, 34963079 - 34963123
Alignment:
| Q |
298 |
agttccattcttgtcttcacagacaacaatcttacttttcacttt |
342 |
Q |
| |
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||||||||||||||||||||| || | |||||| ||||||||||| |
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|
| T |
34963079 |
agttccattcttgtcttcacacactataatcttgcttttcacttt |
34963123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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