View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14572_low_22 (Length: 462)
Name: NF14572_low_22
Description: NF14572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14572_low_22 |
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Alignment Details
Target: chr8 (Bit Score: 352; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 77 - 448
Target Start/End: Original strand, 3069548 - 3069919
Alignment:
| Q |
77 |
caactatatagatatagatattagatatagaaactacagtcgcacccatatacacgggtacacaacacaactactcttgaaggaacataaaaccacagct |
176 |
Q |
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| T |
3069548 |
caactatgtagatatagatattagatatagaaactacagtcgcacccatatacacgggtacaaaacacaactactcttgaaggaacataaaaccacagct |
3069647 |
T |
|
| Q |
177 |
tgatacacagacataaaagcaatatcacagtatgcttaaaacagcgaaacaaggataagcacaagctgaaccccttgcttagcaacttattaatttagag |
276 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3069648 |
tgatacacagacataaaagcaatatcacagtatgcttaaaacagcgaaacaaggataagcacaagctgaaccccttgcttagcaacttattaatttagag |
3069747 |
T |
|
| Q |
277 |
aatattgaatactaaatggtgaggggtttaacggagcttgcacttcaacagtaccttcaagcatatgtatcacatttctcatggttgatctaagacatgg |
376 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3069748 |
aatattgaatactaaacggtgaggggtttaacggagcttgcacttcaacagtaccttcaagcatatgtatcacatttctcatggttgatctaagacatgc |
3069847 |
T |
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| Q |
377 |
atcctcttgaacacaccaaatagcaatgtttaccaatttctccaaattttccttgtcctccaatgcctcatt |
448 |
Q |
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| T |
3069848 |
atcctcttgaacacaccaaatagcaatctttaccaatttctccaaattttccttgtcctccaatgcctcatt |
3069919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 259 - 448
Target Start/End: Complemental strand, 3036314 - 3036125
Alignment:
| Q |
259 |
caacttattaatttagagaatattgaatactaaatggtgaggggtttaacggagcttgcacttcaacagtaccttcaagcatatgtatcacatttctcat |
358 |
Q |
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| T |
3036314 |
caacttattaatttagagaatattgaatactaattggtgaggggtatggtggaacttgcacttcaacagtaccttcaagcatatgtaccacatttctcat |
3036215 |
T |
|
| Q |
359 |
ggttgatctaagacatggatcctcttgaacacaccaaatagcaatgtttaccaatttctccaaattttccttgtcctccaatgcctcatt |
448 |
Q |
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| T |
3036214 |
ggttggtctaagacatggatcctcttgaacacaccaaagagcaatcattaccaatttctccaaattttccttgtcctccaatgcttcatt |
3036125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 261 - 448
Target Start/End: Complemental strand, 3057180 - 3056993
Alignment:
| Q |
261 |
acttattaatttagagaatattgaatactaaatggtgaggggtttaacggagcttgcacttcaacagtaccttcaagcatatgtatcacatttctcatgg |
360 |
Q |
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||||||||||||||||||||||||||||||| | ||||||||| | ||| ||||||||||||||||||||||||||||||||| ||||| ||||||| |
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| T |
3057180 |
acttattaatttagagaatattgaatactaatttgtgaggggtatggtggaacttgcacttcaacagtaccttcaagcatatgtaccacatctctcatgt |
3057081 |
T |
|
| Q |
361 |
ttgatctaagacatggatcctcttgaacacaccaaatagcaatgtttaccaatttctccaaattttccttgtcctccaatgcctcatt |
448 |
Q |
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||| ||||||| |||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
3057080 |
ttggtctaagatatggatcctcttgaacacaccaaagagcaatcattaccaatttctccaaattttccttgtcctccaatgcttcatt |
3056993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 330 - 448
Target Start/End: Original strand, 3048840 - 3048958
Alignment:
| Q |
330 |
ccttcaagcatatgtatcacatttctcatggttgatctaagacatggatcctcttgaacacaccaaatagcaatgtttaccaatttctccaaattttcct |
429 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
3048840 |
ccttcaagcatatgtatcacatttctcatggttggtctaagatatggatcctcttgaacacaccaaatagcaatctttaccaatttctccaaattttcct |
3048939 |
T |
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| Q |
430 |
tgtcctccaatgcctcatt |
448 |
Q |
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|||||| |||||||||||| |
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| T |
3048940 |
tgtccttcaatgcctcatt |
3048958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 141 - 339
Target Start/End: Original strand, 3048235 - 3048436
Alignment:
| Q |
141 |
acacaactactcttgaaggaacataaaaccacagcttgatacacagacataaaagc-aatatcacagtatgcttaaaacagcgaaacaaggataagcaca |
239 |
Q |
| |
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|||| |||| ||||||||| ||||||||| |||| |||||||||| |||||||||| ||||| |||||| ||| |||| | || ||| || |||||| |
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| T |
3048235 |
acactactagtcttgaaggtacataaaactacaggttgatacacacacataaaagcaaatattacagtacacttgcaacaacataataagaattagcaca |
3048334 |
T |
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| Q |
240 |
agctgaaccccttgcttagcaacttattaatttagagaatattgaatactaaatggtgaggggttta--acggagcttgcacttcaacagtaccttcaag |
337 |
Q |
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| T |
3048335 |
agctgccaatcttccttacaaagttattaatttagagaatattcaatactaattggtgaagggtgtatggtggaacttgcacttcaacagtaccttcaag |
3048434 |
T |
|
| Q |
338 |
ca |
339 |
Q |
| |
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|| |
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|
| T |
3048435 |
ca |
3048436 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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