View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14572_low_27 (Length: 435)
Name: NF14572_low_27
Description: NF14572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14572_low_27 |
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Alignment Details
Target: chr2 (Bit Score: 356; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 1 - 420
Target Start/End: Original strand, 3373491 - 3373909
Alignment:
| Q |
1 |
gacctgtcttaataagcatcctttgcctgttgaaacaatttgttcaagtagtttcctagaaaaagttctagcttccttgagttcatattctccactgaac |
100 |
Q |
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| T |
3373491 |
gacctgtcttaataagcatcctttgcctgttgaaacaatttgttcaagtagtttcctagaaaaagttctagcttccttgagttcatattctccactgaac |
3373590 |
T |
|
| Q |
101 |
attaggtttgaggctctgaagacatgaagcatagcacttgagaagtgctcataatctttctcaactttagctcgaatttcatcatgatttagaaacaaac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
3373591 |
attaggtttgaggctctgaagacatgaagcatagcacttgagaagtgctcataatctttctcaactttagctcgaatttcatcatgatttagaaaccaac |
3373690 |
T |
|
| Q |
201 |
aaaaccgtactgcatgcacatgtataaattttacatggtcaattttgcacacatgtaggtcaaatgataacagatgaaatttaagtcactaaactgttcg |
300 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||| ||| |
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| T |
3373691 |
aaaatcgtactgcatgcacatgtataaattttacatggtcaattttgcatacatgtaggtcaaatgataagagatgaaattttagtcactaaactgctcg |
3373790 |
T |
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| Q |
301 |
aagnnnnnnnnttacaaccgtaaaaaagtaagtatataaacttattttacctaagatgtaagaagaaaatttagtgacacgttacattttcttgtccaaa |
400 |
Q |
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| T |
3373791 |
aagaaaaaaaattacaaccgt-aaaaagtaagtatataagcttattttacctaagatgtaagaagaaaatttagtgacacgttacattttcttgtccaaa |
3373889 |
T |
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| Q |
401 |
aatttttagttttgggattt |
420 |
Q |
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| T |
3373890 |
aatttatagttttgggattt |
3373909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 13 - 221
Target Start/End: Original strand, 3347229 - 3347437
Alignment:
| Q |
13 |
taagcatcctttgcctgttgaaacaatttgttcaagtagtttcctagaaaaagttctagcttccttgagttcatattctccactgaacattaggtttgag |
112 |
Q |
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|||||||||||| | ||||||||| || | |||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
3347229 |
taagcatccttttcttgttgaaacgatcttctcaagtagcttcctagaaaaagttctagcttcctcaagttcatattctccactgaacattaggtttgag |
3347328 |
T |
|
| Q |
113 |
gctctgaagacatgaagcatagcacttgagaagtgctcataatctttctcaactttagctcgaatttcatcatgatttagaaacaaacaaaaccgtactg |
212 |
Q |
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||||| || || |||||||| ||||||| ||| |||| |||||||||||||| || ||||||||||||||||| |||||||||| ||||||||||||||| |
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| T |
3347329 |
gctctaaacacgtgaagcattgcacttgtgaattgcttataatctttctcaatttcagctcgaatttcatcatcatttagaaaccaacaaaaccgtactg |
3347428 |
T |
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| Q |
213 |
catgcacat |
221 |
Q |
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|||| |||| |
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| T |
3347429 |
catgtacat |
3347437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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