View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14572_low_36 (Length: 366)
Name: NF14572_low_36
Description: NF14572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14572_low_36 |
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Alignment Details
Target: chr2 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 1 - 353
Target Start/End: Complemental strand, 19172356 - 19172004
Alignment:
| Q |
1 |
ttgacgacgaagacaatgaaaccgaaaccaatgataattcatcggtttcaatgtcttctgatcgtccatggcaaatagccatggcatggaggaatccatc |
100 |
Q |
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| T |
19172356 |
ttgacgacgaagacaatgaaaccgaaaccaatgataattcatcggtttcaatgtcttctgatcgtccatggcaaatagccatggcgtggaggaatccatc |
19172257 |
T |
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| Q |
101 |
agaaaccctaagaacacgtatggaacaaatagagtgcggtttgaagtccatcgttccaacacttaacgataggcttacacgcgcggaaggctgtttcgtt |
200 |
Q |
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| T |
19172256 |
agaaaccctaataacacgtatggagcaaatagagtgcggtttgaagtccatcgttccaacgcttaacgataggcttacacgcgcggaaggctgtttcatt |
19172157 |
T |
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| Q |
201 |
gaacacgttgttggtgactggttttcgtgtaaagatcgcggtgataataaagggaaagctgttttgggaaatgatgttagggtttacatagaagagtttg |
300 |
Q |
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| T |
19172156 |
aaaaacgttgttggtgactggttttcgtgtaaagatcgcggtgataataaagggaaagttgttttgggaaatgatgttagggtttacatagaagagtttg |
19172057 |
T |
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| Q |
301 |
ttagtgttgttctttatgcaaataggttaaggagaagtgttcttgttgatatt |
353 |
Q |
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| T |
19172056 |
ttagtgttgttctttatgcaaataggttaaggagaagtgttcttgttgatatt |
19172004 |
T |
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