View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14572_low_38 (Length: 353)
Name: NF14572_low_38
Description: NF14572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14572_low_38 |
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Alignment Details
Target: chr4 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 23 - 341
Target Start/End: Complemental strand, 54393337 - 54393019
Alignment:
| Q |
23 |
cgtccttccgcctacggtggcggtggcaacttcagaagacctcctcctgacaaagacgccgacaatgaacaagctctcgacctctccacacttaggtacg |
122 |
Q |
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| T |
54393337 |
cgtccttccgcctacggtggcggtggcaacttcagaagagctcctcctgagaaagacgccgacgatggacaagctctcgacctctccacacttaggtacg |
54393238 |
T |
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| Q |
123 |
tattctaactcatacttgattccatttcatttctatttcgaatttttgtgcttaatggtggtgttactttcgatttttgaaatagttcgaataccgttag |
222 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
54393237 |
tattctaactcatacttgattccatttcatttctatttcgaatttttgtgcttaatggttgtgttactttcgatttttgaaatagttcgaataccgttag |
54393138 |
T |
|
| Q |
223 |
acttattgatcagagtcagaatatgattggagtagtatctcttgatcaggcaattcgaacggctgaagatgctgaacttgatttggtattttcatctttt |
322 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |
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| T |
54393137 |
acttattgatcagagtcagaatatggttggagtagtatctcttgatcaggcaattcgaatggctgaagatgctgaacttgatttggtatgttcatctttt |
54393038 |
T |
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| Q |
323 |
tcttgttatattgtatatt |
341 |
Q |
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||||||||||||||||||| |
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| T |
54393037 |
tcttgttatattgtatatt |
54393019 |
T |
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