View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14572_low_40 (Length: 349)
Name: NF14572_low_40
Description: NF14572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14572_low_40 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 153; Significance: 5e-81; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 185 - 349
Target Start/End: Original strand, 30400188 - 30400352
Alignment:
| Q |
185 |
gggtcatgggttccaatagtagtaaagccactaggaagagtagttcaaagggactgaaagggtttcattcttcttgtcttggaacatgttctggatctca |
284 |
Q |
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| T |
30400188 |
gggtcatgggttccaatagtagcaaagccactaggaagagtagttcaaagggactgaaagggtttcattcttcttgtcttggaacatgttctggatctca |
30400287 |
T |
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| Q |
285 |
agacagtgataatgaggagcaggttgttccttaattttcataatgttactgttttttcaactttt |
349 |
Q |
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| T |
30400288 |
tgacagtgataatgaggaacaggttgttccttaattttcataatgttactgttttttcaactttt |
30400352 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 30400004 - 30400134
Alignment:
| Q |
1 |
tcaaccataacacttcatttcacctcaatcttcaaaacaatgcaacacattgttacataacaatgcagtggtagtttagttttacttcattatagatctc |
100 |
Q |
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| T |
30400004 |
tcaaccataacacttcatttcacctcaatcttcaaaacaatgcaacacattgttacataacaatgcagtggtagtttagttttacttcattatagatctc |
30400103 |
T |
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| Q |
101 |
acccatcttccagaatctaaaaaagacagca |
131 |
Q |
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| T |
30400104 |
acccatcttccggaatctaaaaaagacagca |
30400134 |
T |
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