View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14572_low_45 (Length: 318)
Name: NF14572_low_45
Description: NF14572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14572_low_45 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 179; Significance: 1e-96; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 45 - 261
Target Start/End: Original strand, 18701387 - 18701599
Alignment:
| Q |
45 |
ccaagacaaggtttttggaaagctattcaatcttgttgtcatgaattaagataacttttttatcgcatttcacatagtattactattcgttgtgtctaca |
144 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18701387 |
ccaagacaaggtttctggaaagctattcaatcttgttgtcatgaattaagataactttt-tatcgcatttcacatagtattactattcgttgtgtctaca |
18701485 |
T |
|
| Q |
145 |
tttgtaagaaaagaacaggaaatgaacaacattcccaagaataacatcacatgaaacaagacttatgcaatagttttccaaaaataccctaagctagtaa |
244 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
18701486 |
attgtaagaaaagaacaggaaatgaacaacattctcaagaat---atcacatgaaacaagactgatgcaatagttttccaaaaataccctaagctagtaa |
18701582 |
T |
|
| Q |
245 |
attatttgaagtatgaa |
261 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
18701583 |
attatttgaagtatgaa |
18701599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 125 - 255
Target Start/End: Original strand, 18705228 - 18705355
Alignment:
| Q |
125 |
tactattcgttgtgtctacatttgtaagaaaagaacaggaaatgaacaacattcccaagaataacatcacatgaaacaagacttatgcaatagttttcca |
224 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||| |
|
|
| T |
18705228 |
tactattcgttgtgtctacaattgtaagaaaagaacaggaaatgaacaacattctcaagaata---tcacatgaaacaagactgatgcaatagttttcca |
18705324 |
T |
|
| Q |
225 |
aaaataccctaagctagtaaattatttgaag |
255 |
Q |
| |
|
||||||||||||||||||| ||||||||||| |
|
|
| T |
18705325 |
aaaataccctaagctagtatattatttgaag |
18705355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 38 - 71
Target Start/End: Complemental strand, 18701362 - 18701329
Alignment:
| Q |
38 |
tgagaaaccaagacaaggtttttggaaagctatt |
71 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
18701362 |
tgagaaaccaagacaaggtttttggaaagctatt |
18701329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 67 - 196
Target Start/End: Original strand, 44311609 - 44311735
Alignment:
| Q |
67 |
ctattcaatcttgttgtcatgaattaagataacttttttatcgcatttcacatagtattactattcgttgtgtctacatttgtaagaaaagaacaggaaa |
166 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |||||||||||||| ||||| ||||||||||| |||| |
|
|
| T |
44311609 |
ctattcaatcttgttgtcatgaattaaaataactttt-tatcgcatttcacatagtattattattcgttgtgtctgcatttttaagaaaagaa---gaaa |
44311704 |
T |
|
| Q |
167 |
tgaac-aacattcccaagaataacatcacat |
196 |
Q |
| |
|
||||| ||||||||||||||||| ||||||| |
|
|
| T |
44311705 |
tgaactaacattcccaagaataatatcacat |
44311735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University