View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14572_low_46 (Length: 317)
Name: NF14572_low_46
Description: NF14572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14572_low_46 |
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Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 26 - 260
Target Start/End: Original strand, 18701369 - 18701599
Alignment:
| Q |
26 |
tgttggtttctcagcatgccaagacaaggtttttggaaagctattcaatcttgttgtcatgaattaagataacttttttatcgcatttcacatagtatta |
125 |
Q |
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| T |
18701369 |
tgttggtttctcagtatgccaagacaaggtttctggaaagctattcaatcttgttgtcatgaattaagataactttt-tatcgcatttcacatagtatta |
18701467 |
T |
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| Q |
126 |
ctattcgttgtgtctacatttgtaagaaaagaacaggaaatgaacaacattcccaagaataacatcacatgaaacaagacttatgcaatagttttccaaa |
225 |
Q |
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| T |
18701468 |
ctattcgttgtgtctacaattgtaagaaaagaacaggaaatgaacaacattctcaagaat---atcacatgaaacaagactgatgcaatagttttccaaa |
18701564 |
T |
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| Q |
226 |
aataccctaagctagtaaattatttgaagtatgaa |
260 |
Q |
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| T |
18701565 |
aataccctaagctagtaaattatttgaagtatgaa |
18701599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 124 - 254
Target Start/End: Original strand, 18705228 - 18705355
Alignment:
| Q |
124 |
tactattcgttgtgtctacatttgtaagaaaagaacaggaaatgaacaacattcccaagaataacatcacatgaaacaagacttatgcaatagttttcca |
223 |
Q |
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| T |
18705228 |
tactattcgttgtgtctacaattgtaagaaaagaacaggaaatgaacaacattctcaagaata---tcacatgaaacaagactgatgcaatagttttcca |
18705324 |
T |
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| Q |
224 |
aaaataccctaagctagtaaattatttgaag |
254 |
Q |
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| T |
18705325 |
aaaataccctaagctagtatattatttgaag |
18705355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 66 - 195
Target Start/End: Original strand, 44311609 - 44311735
Alignment:
| Q |
66 |
ctattcaatcttgttgtcatgaattaagataacttttttatcgcatttcacatagtattactattcgttgtgtctacatttgtaagaaaagaacaggaaa |
165 |
Q |
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| T |
44311609 |
ctattcaatcttgttgtcatgaattaaaataactttt-tatcgcatttcacatagtattattattcgttgtgtctgcatttttaagaaaagaa---gaaa |
44311704 |
T |
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| Q |
166 |
tgaac-aacattcccaagaataacatcacat |
195 |
Q |
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| T |
44311705 |
tgaactaacattcccaagaataatatcacat |
44311735 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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