View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14572_low_47 (Length: 312)

Name: NF14572_low_47
Description: NF14572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14572_low_47
NF14572_low_47
[»] chr5 (1 HSPs)
chr5 (1-297)||(4292332-4292624)


Alignment Details
Target: chr5 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 4292624 - 4292332
Alignment:
Q  1 agagtatagagtaggattacccaatcaatccggtccaattcaatttgttgtttatctgttcgttttgaattttatctcaaaatatacaaatccaactcaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4292624 agagtatagagtaggattacccaatcaatccggtccaattcaatttgttgtttatctgttcgttttgaattttatctcaaaatatacaaatccaactcaa 4292525  T
Q  101 ctcaatctgtatatgtttgtttgatcgaccaggacatcaagtttatttaaaatcaaaccaaaccgattcgcaaacatctctaattattttcgatcccact 200  Q
    |||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  4292524 ctcaatctgtatatgtttg----atcgaccaggacatcaagtttatttaaaatcaaaccaaaccgattcgcaaacatccctaattattttcgatcccact 4292429  T
Q  201 actcaagttgattcatcacagcttaacatgcattttgcaaaaatggggaggatctggttagtttgttaggtcatgagggggccactatatcattttt 297  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4292428 actcaagttgattcatcacagcttaacatgcattttgcaaaaatggggaggatctggttagtttgttaggtcatgagggggccactatatcattttt 4292332  T

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