View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14572_low_48 (Length: 307)
Name: NF14572_low_48
Description: NF14572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14572_low_48 |
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Alignment Details
Target: chr3 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 178 - 292
Target Start/End: Complemental strand, 36150127 - 36150013
Alignment:
| Q |
178 |
ttttaaatctctccatcgtgaactccattacttatcttgtctatatatacactactcccacacatcacaactttgccatctcctttactttctctctatt |
277 |
Q |
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| T |
36150127 |
ttttaaatctctccatcgtgaactccattacttatcttgtctatatatacactactcccacacatcacaactttgccatctcctttactttctctctatt |
36150028 |
T |
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| Q |
278 |
tgccactaccctttg |
292 |
Q |
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||||||||||||||| |
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| T |
36150027 |
tgccactaccctttg |
36150013 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 18 - 184
Target Start/End: Complemental strand, 36150491 - 36150323
Alignment:
| Q |
18 |
caatctagttaagcaagtaaattgttattctcccaaatattttctccttttcaatccatttcaaaagctcacccaccttc---tattctaacnnnnnnnt |
114 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | |||||||| | ||||||| | |
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| T |
36150491 |
caatcttgttaagcaagtaaattgttattctcccaaatattttctccttttcaatctatttcaaaagcttatccaccttctcattttctaac-aaaaaat |
36150393 |
T |
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| Q |
115 |
gccaagaacttgtttttgactgtggttaatatttttactgagattgtggttaactttgtgcaattttaaa |
184 |
Q |
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|||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36150392 |
gccaagaaattgtttttgaccgtggttaatatttttactgagattgtggttaactttgtgcaattttaaa |
36150323 |
T |
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