View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14572_low_5 (Length: 677)
Name: NF14572_low_5
Description: NF14572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14572_low_5 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 548; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 548; E-Value: 0
Query Start/End: Original strand, 14 - 659
Target Start/End: Original strand, 38782228 - 38782879
Alignment:
| Q |
14 |
aatataagaaccaaagaacaaatctcagccgtgcaattacattgataat---tacaagttaccttccagaaaaatctaaaccgtctaaaatatcccaatc |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38782228 |
aatataagaaccaaagaacaaatctcagccgtgcaattacactgataataattacaagttaccttccagaaaaatctaaaccgtctaaaatatcccaatc |
38782327 |
T |
|
| Q |
111 |
tcaaacaaatatacaatcgcctacactatataataacttacggtttgtgtactttatactnnnnnnnncgtttcataactctctctatatcttttggtag |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
38782328 |
tcaaacaaatatacaatcgcctacactatataataacttacggtttgtgtacttcatactaaaaaaaacgtttcataactctctctatatcttttggtag |
38782427 |
T |
|
| Q |
211 |
attcttgatcttgtgcaaccatgcgtcctccagagaagagagtagattataaggtaggagataaagtagaagtatgcagcaaagatgaagggtttgtagg |
310 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
38782428 |
attcttgatcttgtgcaatcatgcgtcctccagagaagagagtagattataaggtaggagataaagtagaagtatgcagcgaagatgaagggtttgtagg |
38782527 |
T |
|
| Q |
311 |
ttcatactttgaagctacaattgtttcatgtcttgagagcggaaaatatgtgatccgttacaagaatcttcttaaagatgacgagtcggaacttcttatg |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38782528 |
ttcatactttgaagctacaattgtttcatgtcttgagagcggaaaatatgtgatccgttacaagaatcttcttaaagatgacgagtcggaacttcttatg |
38782627 |
T |
|
| Q |
411 |
gaaacactttttccaaaagatcttcgtccattaccaccacgtgttcgtaatccttcgaggtttgaactcaatcagaaagttgatgtatttgataacgatg |
510 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||| |||||||||||||| || |||| |||||||||| ||||||||||||||||||||||||| |
|
|
| T |
38782628 |
gaaacactttttccaaaagatcttcgtccaataccaccacatgttcgtaatcctttgaagtttaaactcaatcaaaaagttgatgtatttgataacgatg |
38782727 |
T |
|
| Q |
511 |
gttggtgggtaggggaaatcgctagcgagaagatcttaatggaaaagagt---tactatagtgtgtattttgactattgccatcaaactatttactaccc |
607 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38782728 |
gttggtgggtaggtaaaatcgctagcgagaagatcttgatggaaaagagttgctactatagtgtgtattttgactattgccatcaaactatttactaccc |
38782827 |
T |
|
| Q |
608 |
ttgtgatcagattagggttcatcaagaattggtttggggagactggatcttc |
659 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38782828 |
ttgtgatcagattagggttcatcaagaattggtttggggagactggatcttc |
38782879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 208 - 659
Target Start/End: Complemental strand, 38743810 - 38743356
Alignment:
| Q |
208 |
tagattcttgatcttgtgcaaccatgcgtcctccagagaagagagtagattataaggtaggagataaagtagaagtatgcagcaaagatgaagggtttgt |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||| || | ||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
38743810 |
tagattcttgatcttgtgcaaccatgcgtccaccggtgaagagagttgattacaaggtaggagataaagtagaagtatgcagcaaagaagaagggtttgt |
38743711 |
T |
|
| Q |
308 |
aggttcatactttgaagctacaattgtttcatgtcttgagagcggaaaatatgtgatccgttacaagaatcttcttaaagatgacgagtcggaacttctt |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
38743710 |
aggttcatactttgaagctacaattgtttcatgtctagagagtggaaaatatgtgatccgttacaagaatcttcttaaagatgacgaatcggaacttctt |
38743611 |
T |
|
| Q |
408 |
atggaaacactttttccaaaagatcttcgtccattaccaccacgtgttcgtaatccttcgaggtttgaactcaatcagaaagttgatgtatttgataacg |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |
|
|
| T |
38743610 |
atggaaacactttttccaaaagatcttcgtccattaccgccacgtgttcgtaatccttcgaggtttgaactcaatcagaaagttgacgtgtttgataacg |
38743511 |
T |
|
| Q |
508 |
atggttggtgggtaggggaaatcgctagcgagaagatcttaatggaaaagagtt---actatagtgtgtattttgactattgccatcaaactatttacta |
604 |
Q |
| |
|
||||||||||||||||| |||| ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38743510 |
atggttggtgggtagggaaaattgctagcgagaagatcttgatggaaaagagttactactatagtgtgtattttgactattgccatcaaactatttacta |
38743411 |
T |
|
| Q |
605 |
cccttgtgatcagattagggttcatcaagaattggtttggggagactggatcttc |
659 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38743410 |
cccttgtgatcagattagggttcatcaagaattggtttggggagactggatcttc |
38743356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 212 - 658
Target Start/End: Original strand, 38788601 - 38789050
Alignment:
| Q |
212 |
ttcttgatcttgtgcaaccatgcgtcctccagagaagagagtagattataaggtaggagataaagtagaagtatgcagcaaagatgaagggtttgtaggt |
311 |
Q |
| |
|
||||||||||||||||||||||||||| || | ||||||||| ||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||| |
|
|
| T |
38788601 |
ttcttgatcttgtgcaaccatgcgtccaccggtgaagagagttgattacaaggtaggagataaagttgaagtatgcagcaaagaagaagggtttgtaggt |
38788700 |
T |
|
| Q |
312 |
tcatactttgaagctacaattgtttcatgtcttgagagcggaaaatatgtgatccgttacaagaatcttcttaaagatgacgagtcggaacttcttatgg |
411 |
Q |
| |
|
|| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
38788701 |
tcgtactttgaagctacaattgtttcatgtctagagagtggaaaatatgtgatccgttacaagaatcttcttaaagatgacgaatcggaacttcttatgg |
38788800 |
T |
|
| Q |
412 |
aaacactttttccaaaagatcttcgtccattaccaccacgtgttcgtaatccttcgaggtttgaactcaatcagaaagttgatgtatttgataacgatgg |
511 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||| |||||||| |||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
38788801 |
aaacactttttccaaaagatcttcgtccattaccgccacgtgttcataatccttggaggtttgaactcaatcagaaagttgatgtgtttgataacgatgg |
38788900 |
T |
|
| Q |
512 |
ttggtgggtaggggaaatcgctagcgagaagatcttaatggaaaagagt---tactatagtgtgtattttgactattgccatcaaactatttactaccct |
608 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38788901 |
ttggtgggtaggggaaatcgctagcgagaagatcttaatggaaaagagttactactatagtgtgtattttgactattgccatcaaactatttactaccct |
38789000 |
T |
|
| Q |
609 |
tgtgatcagattagggttcatcaagaattggtttggggagactggatctt |
658 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38789001 |
tgtgatcagattagggttcatcaagaattggtttggggagactggatctt |
38789050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 14 - 119
Target Start/End: Complemental strand, 38744015 - 38743909
Alignment:
| Q |
14 |
aatataagaaccaaagaacaaatctcagccgtgcaattacattgataat-tacaagttaccttccagaaaaatctaaaccgtctaaaatatcccaatctc |
112 |
Q |
| |
|
||||||| ||||||||| |||||||| |||| |||| ||| | | ||| |||||||||||||| | ||||||||||||||||||||||||| |||||| |
|
|
| T |
38744015 |
aatataacaaccaaagagaaaatctcaaccgttcaatcacaataacaatgtacaagttaccttctaaaaaaatctaaaccgtctaaaatatctgaatctc |
38743916 |
T |
|
| Q |
113 |
aaacaaa |
119 |
Q |
| |
|
||||||| |
|
|
| T |
38743915 |
aaacaaa |
38743909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 63 - 147
Target Start/End: Original strand, 38788446 - 38788530
Alignment:
| Q |
63 |
tacaagttaccttccagaaaaatctaaaccgtctaaaatatcccaatctcaaacaaatatacaatcgcctacactatataataac |
147 |
Q |
| |
|
|||||||||||||| | |||||||||||| ||||||||||| ||||| ||||||||| | ||| |||||||||||||||||| |
|
|
| T |
38788446 |
tacaagttaccttctaaaaaaatctaaacaatctaaaatatctgaatctaaaacaaataccccatcacctacactatataataac |
38788530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 249; Significance: 1e-138; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 207 - 658
Target Start/End: Complemental strand, 30963227 - 30962774
Alignment:
| Q |
207 |
gtagattcttgatcttgtgcaaccatgcgtcctccagagaagagagtagattataaggtaggagataaagtagaagtatgcagcaaagatgaagggtttg |
306 |
Q |
| |
|
||||||||||||||| ||||||||||||||| ||| ||||||||| ||||| |||||||||||||||||||||||||| || ||||| |||||||||| |
|
|
| T |
30963227 |
gtagattcttgatctattgcaaccatgcgtccaccaatgaagagagtggattacaaggtaggagataaagtagaagtatgtagtaaagaagaagggtttg |
30963128 |
T |
|
| Q |
307 |
taggttcatactttgaagctacaattgtttcatgtcttgagagcggaaaatatgtgatccgttacaagaatcttcttaaagatgacgagtcggaacttct |
406 |
Q |
| |
|
|||||||||| |||||||| |||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||| ||||| || ||||||| |
|
|
| T |
30963127 |
taggttcatattttgaagccacaattgtttcatgccttgagagtggaaaatatgtgattcgttacaagaatcttcttaaagacgacgaatctcaacttct |
30963028 |
T |
|
| Q |
407 |
tatggaaacactttttccaaaagatcttcgtccattaccaccacgtgttcgtaatccttcgaggtttgaactcaatcagaaagttgatgtatttgataac |
506 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| || ||||||||||| |||||||| | |||| |||||||||| ||||||||||| ||| |||| |
|
|
| T |
30963027 |
tatggaaacacttttatcaaaagatcttcgtccatcacagccacgtgttcgaaatccttctaagtttcaactcaatcaaaaagttgatgttttttataaa |
30962928 |
T |
|
| Q |
507 |
gatggttggtgggtaggggaaatcgctagcgagaagatcttaatggaaaagagt---tactatagtgtgtattttgactattgccatcaaactatttact |
603 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||||||||| | |||||||| | | ||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
30962927 |
gatggttggtgggtagggaaaattgctagcgagaagatcctcatggaaaacaattactactatagtgtgtattttgactacacccatcaaactatttact |
30962828 |
T |
|
| Q |
604 |
acccttgtgatcagattagggttcatcaagaattggtttggggagactggatctt |
658 |
Q |
| |
|
|||| |||||||| ||||||||||||||| | ||| |||||||||| |||||||| |
|
|
| T |
30962827 |
accc-tgtgatcaaattagggttcatcaaaagttgttttggggagagtggatctt |
30962774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 60 - 119
Target Start/End: Complemental strand, 30964978 - 30964920
Alignment:
| Q |
60 |
aattacaagttaccttccagaaaaatctaaaccgtctaaaatatcccaatctcaaacaaa |
119 |
Q |
| |
|
||||||||||||||||| |||||| ||||||||||||||||||| ||||||||||||||| |
|
|
| T |
30964978 |
aattacaagttaccttctagaaaactctaaaccgtctaaaatat-ccaatctcaaacaaa |
30964920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 207 - 318
Target Start/End: Original strand, 30897238 - 30897349
Alignment:
| Q |
207 |
gtagattcttgatcttgtgcaaccatgcgtcctccagagaagagagtagattataaggtaggagataaagtagaagtatgcagcaaagatgaagggtttg |
306 |
Q |
| |
|
|||||||||||| |||| | ||||||||||| ||| || |||||| ||||| || ||||||||||||||||||||||||| ||||| || |||||| |
|
|
| T |
30897238 |
gtagattcttgacattgttccaccatgcgtccaccaatgaggagagtggattacaaaataggagataaagtagaagtatgcagtaaagaagaggggtttt |
30897337 |
T |
|
| Q |
307 |
taggttcatact |
318 |
Q |
| |
|
| ||||| |||| |
|
|
| T |
30897338 |
tcggttcgtact |
30897349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 443 - 545
Target Start/End: Original strand, 30897474 - 30897576
Alignment:
| Q |
443 |
accaccacgtgttcgtaatccttcgaggtttgaactcaatcagaaagttgatgtatttgataacgatggttggtgggtaggggaaatcgctagcgagaag |
542 |
Q |
| |
|
|||||||||||||||||||||| ||| ||||||||||||||||||||| || |||| |||||||||||||||||| ||||| | || |||||| |
|
|
| T |
30897474 |
accaccacgtgttcgtaatcctcatgaatttcaactcaatcagaaagttgatgctttccataatgatggttggtgggtagggcaaatcaccagtgagaag |
30897573 |
T |
|
| Q |
543 |
atc |
545 |
Q |
| |
|
||| |
|
|
| T |
30897574 |
atc |
30897576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 99; Significance: 2e-48; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 219 - 544
Target Start/End: Original strand, 2914550 - 2914877
Alignment:
| Q |
219 |
tcttgtgcaaccatgcgtcctccagagaagagagtagattataaggtaggagataaagtagaagtatgcagcaaagatgaagggtttgtaggttcatact |
318 |
Q |
| |
|
|||| ||||| ||||||||| ||| |||||||| ||||| ||||||||||| ||||||||||||||||||||||| || ||| | |||||||| |||| |
|
|
| T |
2914550 |
tcttttgcaaacatgcgtccgccaacaaagagagtcgattacaaggtaggagacaaagtagaagtatgcagcaaagaagatgggctcgtaggttcttact |
2914649 |
T |
|
| Q |
319 |
ttgaagctacaattgtttcatgtcttga---gagcggaaaatatgtgatccgttacaagaatcttcttaaagatgacgagtcggaacttcttatggaaac |
415 |
Q |
| |
|
||||| ||||| ||| |||||||||| ||| || |||||| | | || |||||||| |||||||||||||| ||||| |||||||| | ||| | |
|
|
| T |
2914650 |
atgaaggcacaatcgtt-catgtcttgatgagagagggaaatatacggttcgctacaagaaccttcttaaagatgatgagtctgaacttctcacggagat |
2914748 |
T |
|
| Q |
416 |
actttttccaaaagatcttcgtccattaccaccacgtgttcgtaatccttcgaggtttgaactcaatcagaaagttgatgtatttgataacgatggttgg |
515 |
Q |
| |
|
|||||||| |||||||||| ||| | |||||||||| ||||||| ||||| | ||| ||||||| ||||||||| |||| ||||| |||||||| ||| |
|
|
| T |
2914749 |
actttttctaaaagatctttgtctagtaccaccacgagttcgtaggccttctaagttcaaactcaaccagaaagtttatgtttttgacaacgatgggtgg |
2914848 |
T |
|
| Q |
516 |
tgggtaggggaaatcgctagcgagaagat |
544 |
Q |
| |
|
||| |||| |||||| ||||||| ||||| |
|
|
| T |
2914849 |
tggataggagaaatcactagcgacaagat |
2914877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 267 - 545
Target Start/End: Complemental strand, 5963760 - 5963481
Alignment:
| Q |
267 |
ggagataaagtagaagtatgcagcaaagatgaagggtttgtaggttcatactttgaagctacaattgtttcatgtctt-gagagcggaaaatatgtgatc |
365 |
Q |
| |
|
||||| ||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||| | ||| ||||| || | |
|
|
| T |
5963760 |
ggagacaaagtggaagtatgcagcaaagaagaagggtttgtgggttcatactttgaagctacaattgtttcgtgtcttcttcaatggacaatatttggtt |
5963661 |
T |
|
| Q |
366 |
cgttacaagaatcttcttaaagatgacgagtcggaacttcttatggaaacactttttccaaaagatcttcgtccattaccaccacgtgttcgtaatcctt |
465 |
Q |
| |
|
|||||||| || ||| | ||||||| |||| |||||| | || || || |||| | || |||||||||||||| ||||||||||||| ||| | |
|
|
| T |
5963660 |
cgttacaaaaaccttttgcaagatgataagtctagacttctcttagagaccgttcatccatatgagcttcgtccattaccgccacgtgttcgtagtcc-t |
5963562 |
T |
|
| Q |
466 |
cgag-gtttgaactcaatcagaaagttgatgtatttgataacgatggttggtgggtaggggaaatcgctagcgagaagatc |
545 |
Q |
| |
|
|| | |||| |||||||||| |||||||||| ||||| ||||||||||||||| ||||| ||||| |||| ||||||||| |
|
|
| T |
5963561 |
cgtgagtttcaactcaatcaaaaagttgatgcttttgacaacgatggttggtggttagggcaaatcactagtgagaagatc |
5963481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 279 - 383
Target Start/End: Original strand, 29626886 - 29626990
Alignment:
| Q |
279 |
gaagtatgcagcaaagatgaagggtttgtaggttcatactttgaagctacaattgtttcatgtcttgagagcggaaaatatgtgatccgttacaagaatc |
378 |
Q |
| |
|
|||||||||| |||||||||||||||| || || |||||||| || | ||||||| |||| || |||| ||| |||||||| | ||||||||||| | |
|
|
| T |
29626886 |
gaagtatgcatcaaagatgaagggttttggggctcgtactttgaggccaaaattgttgcatgcctcgagaatggagaatatgtggttcgttacaagaacc |
29626985 |
T |
|
| Q |
379 |
ttctt |
383 |
Q |
| |
|
||||| |
|
|
| T |
29626986 |
ttctt |
29626990 |
T |
|
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