View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14572_low_51 (Length: 297)
Name: NF14572_low_51
Description: NF14572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14572_low_51 |
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Alignment Details
Target: chr4 (Bit Score: 171; Significance: 7e-92; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 32041117 - 32041291
Alignment:
| Q |
1 |
tcaacctaacttattacacgcaaataaacggcaagaatcttaaattgatatacgtgtatcctccaatgaaaaacaaccacgtaagaacctcctagtttga |
100 |
Q |
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| T |
32041117 |
tcaacctaacttattacacgcaaataaacggcaagaatcttaaattgatatacgtgtatcctccaatgaaagacaaccacgtaagaacctcctagtttga |
32041216 |
T |
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| Q |
101 |
catcctagttgagttgatcagagtagttggcatctttgtttggttggaaacatcaactctcactgttgaaagaaa |
175 |
Q |
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| T |
32041217 |
catcctagttgagttgatcagagtagttggcatctttgtttggttggaaacatcaactctcactgttgaaagaaa |
32041291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 260 - 297
Target Start/End: Original strand, 32041370 - 32041407
Alignment:
| Q |
260 |
cgtaatcatgattaaccttaacccaaaacccttttttc |
297 |
Q |
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| T |
32041370 |
cgtaatcatgattaaccttaactcaaaacccttttttc |
32041407 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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