View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14572_low_55 (Length: 277)
Name: NF14572_low_55
Description: NF14572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14572_low_55 |
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Alignment Details
Target: chr7 (Bit Score: 169; Significance: 1e-90; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 17 - 189
Target Start/End: Original strand, 1268190 - 1268362
Alignment:
| Q |
17 |
aacaacagcgcttttactcacttggacagttatgttactagcaagtaatccatcttggcaagaaaaagttagagatgaggttaaaagggtatgcaatgga |
116 |
Q |
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| T |
1268190 |
aacaacagcgcttttactcacttggacagttatgttactagcaagtaatccatcttggcaagaaaaagttagagatgaggttaaaagggtatgcaatgga |
1268289 |
T |
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| Q |
117 |
ggaattccctctttggataaactctccaagctcactatggtaagtaattaacaaaatcttcttgttttaaatg |
189 |
Q |
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| T |
1268290 |
ggaattccctctttggataaactctccaagctcagtatggtaagtaattaacaaaatcttcttgttttaaatg |
1268362 |
T |
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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 216 - 265
Target Start/End: Original strand, 1268400 - 1268449
Alignment:
| Q |
216 |
taatacaccagattccatcagaattccgcagttaaacttacttaagcgag |
265 |
Q |
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| T |
1268400 |
taatacaccagattctatcaaaatttcgcagttaaacttacttaaacgag |
1268449 |
T |
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