View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14572_low_56 (Length: 275)
Name: NF14572_low_56
Description: NF14572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14572_low_56 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 263; Significance: 1e-147; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 9 - 275
Target Start/End: Original strand, 34820921 - 34821187
Alignment:
| Q |
9 |
gaagaatatcattgggccgtcgtttaccgttatcaactttgttccatgcataatcaaatgtctcgagcatttgagattttactttacaagcttcaccatc |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34820921 |
gaagaatatcattgggccgtcgtttaccgttatcaactttgttccatgcataatcaaatgtctcgagcatttgagattttactttacaagcttcaccatc |
34821020 |
T |
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| Q |
109 |
ggtcttcatctgttcaacaaatagtattgcgcaaataaatcattgaaattaaaaatatttgcaaatcatttgtttaagataaaattttacttgtcttccc |
208 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34821021 |
ggtcttcatctgttcaacaaatggtattgcgcaaataaatcattgaaattaaaaatatttgcaaatcatttgtttaagataaaattttacttgtcttccc |
34821120 |
T |
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| Q |
209 |
taaatgcaagacttgatatcaattaattgtgtaaattatttccacaaacatcattagagatcattgc |
275 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34821121 |
taaatgcaagacttgatatcaattaattgtgtaaattatttccacaaacatcattagagatcattgc |
34821187 |
T |
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