View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14572_low_59 (Length: 266)
Name: NF14572_low_59
Description: NF14572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14572_low_59 |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 38 - 255
Target Start/End: Complemental strand, 18701362 - 18701145
Alignment:
| Q |
38 |
tgagaaaccaagacaaggtttttggaaagctattatgagaagttggacctttttattttatttactgtctattgaaattcattttaactcaaccctcctc |
137 |
Q |
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| T |
18701362 |
tgagaaaccaagacaaggtttttggaaagctattatgagaagttggacctttttattttatttactgtctattgaaattcattttaactcaaccctcctc |
18701263 |
T |
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| Q |
138 |
ttcaaacatatctgcaaccaatttttacttatccaacgcaacatcaaaaagtctactaaattgatgacgcaaaatgtatatctattaatgacgaaaaatg |
237 |
Q |
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| T |
18701262 |
ttcaaacatatctgcaaccaatttttacttatccaacgcaacatcaaaaagtctactaaattgatgacacaaaatgtatatctattaatgacgaaaaatg |
18701163 |
T |
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| Q |
238 |
ttctagggcctttgcttc |
255 |
Q |
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| T |
18701162 |
ttccagggcctttgcttc |
18701145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 88 - 239
Target Start/End: Complemental strand, 44309560 - 44309404
Alignment:
| Q |
88 |
ttttattttatttactgtctatt-----gaaattcattttaactcaaccctcctcttcaaacatatctgcaaccaatttttacttatccaacgcaacatc |
182 |
Q |
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| T |
44309560 |
ttttattttatttaccgtctattttgttgaaattcattttaactcaaccctcctcttcaaacatatctgcaaccaatttttccttatccaatgcaacatc |
44309461 |
T |
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| Q |
183 |
aaaaagtctactaaattgatgacgcaaaatgtatatctattaatgacgaaaaatgtt |
239 |
Q |
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| T |
44309460 |
aaaaagtctactaaattgatgacgcaaaatgtatatctattaatgacgaaaaatgtt |
44309404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 46 - 96
Target Start/End: Complemental strand, 44310023 - 44309973
Alignment:
| Q |
46 |
caagacaaggtttttggaaagctattatgagaagttggacctttttatttt |
96 |
Q |
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| T |
44310023 |
caagacaaggtttttggaaagctattatgagaagttggacctttttatttt |
44309973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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