View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14572_low_62 (Length: 244)

Name: NF14572_low_62
Description: NF14572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14572_low_62
NF14572_low_62
[»] chr8 (2 HSPs)
chr8 (93-244)||(14055662-14055814)
chr8 (2-35)||(14055870-14055903)
[»] chr5 (4 HSPs)
chr5 (127-166)||(30873081-30873120)
chr5 (127-168)||(14513011-14513052)
chr5 (137-166)||(35476637-35476666)
chr5 (214-242)||(35943964-35943992)
[»] chr4 (2 HSPs)
chr4 (130-165)||(55323064-55323099)
chr4 (134-166)||(2554212-2554244)
[»] chr3 (6 HSPs)
chr3 (134-177)||(11076385-11076428)
chr3 (134-177)||(11076888-11076931)
chr3 (134-177)||(11077043-11077086)
chr3 (214-244)||(11907371-11907401)
chr3 (214-244)||(33118921-33118951)
chr3 (127-168)||(47495856-47495897)
[»] chr1 (2 HSPs)
chr1 (135-173)||(32544047-32544085)
chr1 (134-166)||(28773095-28773127)
[»] chr7 (6 HSPs)
chr7 (214-242)||(12310906-12310934)
chr7 (134-166)||(33645317-33645349)
chr7 (214-242)||(36208173-36208201)
chr7 (135-171)||(36284642-36284678)
chr7 (134-166)||(38318952-38318984)
chr7 (134-166)||(48047006-48047038)


Alignment Details
Target: chr8 (Bit Score: 133; Significance: 3e-69; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 93 - 244
Target Start/End: Complemental strand, 14055814 - 14055662
Alignment:
Q  93 tctacatttgactcattaacttttctt-gacaagagactcactaacttgtgccttaaggacacaagttagcattttctttataatatttgaagctcacac 191  Q
    ||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14055814 tctacatttgactcaataacttttttttgacaagagactcactaacttgtgccttaaggacacaagttagcattttctttataatatttgaagctcacac 14055715  T
Q  192 acggtctttgtggtatggtatcgagttatgatacatagacacccttaggtgac 244  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  14055714 acggtctttgtggtatggtatcgagttatgatacattgacacccttaggtgac 14055662  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 35
Target Start/End: Complemental strand, 14055903 - 14055870
Alignment:
Q  2 ccaagaaaattattcccttaagatttgtacattc 35  Q
    |||| |||||||||||||||||||||||||||||    
T  14055903 ccaataaaattattcccttaagatttgtacattc 14055870  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 127 - 166
Target Start/End: Original strand, 30873081 - 30873120
Alignment:
Q  127 gactcactaacttgtgccttaaggacacaagttagcattt 166  Q
    |||||| ||||||||||||||||| |||||||||||||||    
T  30873081 gactcattaacttgtgccttaagggcacaagttagcattt 30873120  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 127 - 168
Target Start/End: Original strand, 14513011 - 14513052
Alignment:
Q  127 gactcactaacttgtgccttaaggacacaagttagcattttc 168  Q
    |||||| |||||||||||||| | ||||||||||||||||||    
T  14513011 gactcattaacttgtgccttatgtacacaagttagcattttc 14513052  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 166
Target Start/End: Original strand, 35476637 - 35476666
Alignment:
Q  137 cttgtgccttaaggacacaagttagcattt 166  Q
    ||||||||||||||||||||||||||||||    
T  35476637 cttgtgccttaaggacacaagttagcattt 35476666  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 242
Target Start/End: Complemental strand, 35943992 - 35943964
Alignment:
Q  214 gagttatgatacatagacacccttaggtg 242  Q
    |||||||||||||||||||||||||||||    
T  35943992 gagttatgatacatagacacccttaggtg 35943964  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 130 - 165
Target Start/End: Original strand, 55323064 - 55323099
Alignment:
Q  130 tcactaacttgtgccttaaggacacaagttagcatt 165  Q
    ||||||||||||||||||||| ||||||||||||||    
T  55323064 tcactaacttgtgccttaagggcacaagttagcatt 55323099  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 166
Target Start/End: Original strand, 2554212 - 2554244
Alignment:
Q  134 taacttgtgccttaaggacacaagttagcattt 166  Q
    ||||||||||||||||| |||||||||||||||    
T  2554212 taacttgtgccttaagggcacaagttagcattt 2554244  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 134 - 177
Target Start/End: Complemental strand, 11076428 - 11076385
Alignment:
Q  134 taacttgtgccttaaggacacaagttagcattttctttataata 177  Q
    ||||||||||||||| ||||||||||||||||| ||| ||||||    
T  11076428 taacttgtgccttaacgacacaagttagcatttccttaataata 11076385  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 134 - 177
Target Start/End: Complemental strand, 11076931 - 11076888
Alignment:
Q  134 taacttgtgccttaaggacacaagttagcattttctttataata 177  Q
    ||||||||||||||| ||||||||||||||||| ||| ||||||    
T  11076931 taacttgtgccttaacgacacaagttagcatttccttaataata 11076888  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 134 - 177
Target Start/End: Original strand, 11077043 - 11077086
Alignment:
Q  134 taacttgtgccttaaggacacaagttagcattttctttataata 177  Q
    ||||||||||||||| ||||||||||||||||| ||| ||||||    
T  11077043 taacttgtgccttaacgacacaagttagcatttccttaataata 11077086  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 244
Target Start/End: Original strand, 11907371 - 11907401
Alignment:
Q  214 gagttatgatacatagacacccttaggtgac 244  Q
    |||||||||||||||||||||||||||||||    
T  11907371 gagttatgatacatagacacccttaggtgac 11907401  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 244
Target Start/End: Complemental strand, 33118951 - 33118921
Alignment:
Q  214 gagttatgatacatagacacccttaggtgac 244  Q
    |||||||||||||||||||||||||||||||    
T  33118951 gagttatgatacatagacacccttaggtgac 33118921  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 127 - 168
Target Start/End: Original strand, 47495856 - 47495897
Alignment:
Q  127 gactcactaacttgtgccttaaggacacaagttagcattttc 168  Q
    |||||| |||||||||| ||||| ||||||||||||||||||    
T  47495856 gactcattaacttgtgctttaagcacacaagttagcattttc 47495897  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 173
Target Start/End: Original strand, 32544047 - 32544085
Alignment:
Q  135 aacttgtgccttaaggacacaagttagcattttctttat 173  Q
    |||||||||||||| ||||||||||||||||||| ||||    
T  32544047 aacttgtgccttaaagacacaagttagcattttccttat 32544085  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 166
Target Start/End: Original strand, 28773095 - 28773127
Alignment:
Q  134 taacttgtgccttaaggacacaagttagcattt 166  Q
    ||||||||||||||||| |||||||||||||||    
T  28773095 taacttgtgccttaagggcacaagttagcattt 28773127  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 242
Target Start/End: Original strand, 12310906 - 12310934
Alignment:
Q  214 gagttatgatacatagacacccttaggtg 242  Q
    |||||||||||||||||||||||||||||    
T  12310906 gagttatgatacatagacacccttaggtg 12310934  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 166
Target Start/End: Original strand, 33645317 - 33645349
Alignment:
Q  134 taacttgtgccttaaggacacaagttagcattt 166  Q
    ||||||||||||||||| |||||||||||||||    
T  33645317 taacttgtgccttaagggcacaagttagcattt 33645349  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 242
Target Start/End: Original strand, 36208173 - 36208201
Alignment:
Q  214 gagttatgatacatagacacccttaggtg 242  Q
    |||||||||||||||||||||||||||||    
T  36208173 gagttatgatacatagacacccttaggtg 36208201  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 171
Target Start/End: Complemental strand, 36284678 - 36284642
Alignment:
Q  135 aacttgtgccttaaggacacaagttagcattttcttt 171  Q
    |||||||||||||| ||||||||||| ||||||||||    
T  36284678 aacttgtgccttaaagacacaagttaacattttcttt 36284642  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 166
Target Start/End: Complemental strand, 38318984 - 38318952
Alignment:
Q  134 taacttgtgccttaaggacacaagttagcattt 166  Q
    ||||||||||||||||||||||||||| |||||    
T  38318984 taacttgtgccttaaggacacaagttaacattt 38318952  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 166
Target Start/End: Original strand, 48047006 - 48047038
Alignment:
Q  134 taacttgtgccttaaggacacaagttagcattt 166  Q
    ||||||||||||||||| |||||||||||||||    
T  48047006 taacttgtgccttaagggcacaagttagcattt 48047038  T

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