View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14572_low_69 (Length: 237)
Name: NF14572_low_69
Description: NF14572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14572_low_69 |
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Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 36396008 - 36396228
Alignment:
| Q |
1 |
ttgtctgtgtatcgtatagaattttgattaataatgtcctgttctgtctgtatatcgtttagaattttgactaataatggtctgtgctcttgtattgcta |
100 |
Q |
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| T |
36396008 |
ttgtctgtgtatcgtatagaattttgattaataatgtcctgttctgtctgtatatcgtatagaattttgactaataatggtctgtgctcttgtattgcta |
36396107 |
T |
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| Q |
101 |
tgtgtgaaggattgtttgatagagggtaatacaggaaatggtcccaatgaggcatcggcttctggttgctcaaacagaacccttctcctaccttgctctt |
200 |
Q |
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| T |
36396108 |
tgtgtgaaggattgtttgatagagggtaatccaggaaatggtcccaatgaggcatcggcttctggttgctcaaacagaacccttctcctaccttgctctt |
36396207 |
T |
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| Q |
201 |
ctaacatggatgtgtccgatg |
221 |
Q |
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| T |
36396208 |
ctaacatggatgcgtccgatg |
36396228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 5 - 79
Target Start/End: Original strand, 36395969 - 36396043
Alignment:
| Q |
5 |
ctgtgtatcgtatagaattttgattaataatgtcctgttctgtctgtatatcgtttagaattttgactaataatg |
79 |
Q |
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| T |
36395969 |
ctgtatatcgtaaataattttgattaataatgtcctgttttgtctgtgtatcgtatagaattttgattaataatg |
36396043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 87 - 135
Target Start/End: Complemental strand, 10781749 - 10781701
Alignment:
| Q |
87 |
ctcttgtattgctatgtgtgaaggattgtttgatagagggtaatacagg |
135 |
Q |
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| T |
10781749 |
ctcttgtattcctatgtgtgaaggattgtttgatagagggtaatccagg |
10781701 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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