View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14572_low_7 (Length: 600)
Name: NF14572_low_7
Description: NF14572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14572_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 6 - 586
Target Start/End: Complemental strand, 50552258 - 50551688
Alignment:
| Q |
6 |
agaatttacgttgagtaatttaactgcgtattttagatgaactgttgcaatgtgccaacttgttaatataattgattatattttctttcttggataatct |
105 |
Q |
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| T |
50552258 |
agaatttacgttgagtaatttaactgcgtattttagatgaactgttgcaatgtgccaacttgttaatataattgattatattttctttcttggataatct |
50552159 |
T |
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| Q |
106 |
atannnnnnnctgtttaaggtatattgggattaagttggaaagttcgtttaaaatttggaatagaaacaaaattatgccaagtcatcatcacaacaataa |
205 |
Q |
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| T |
50552158 |
atatttttttctgtttaaggtatattgggattaagttggaaagttcgtttaaaatttggaatagaaacaaaattatgccaagtcatcatcacaacaataa |
50552059 |
T |
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| Q |
206 |
aaagagaaagaaaacgtggagataaaaatgggggaaatgccaagatatttttaaatttcaaggaccagatttgtaaatttaaaaacaaaggaaccaaaat |
305 |
Q |
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| T |
50552058 |
aaagagaaagaaaacgtggagat-aaaataggggaaatgccaagatatttttaaatttcaaggaccagatttgtaaatttaaaaacaaaggaaccaaaat |
50551960 |
T |
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| Q |
306 |
cgtaaatagagcacaaaataattaagaggacttaactgcatggtgnnnnnnntatggaacttagctaaccactcaagtagatataaaattgtttctaatt |
405 |
Q |
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| T |
50551959 |
cgtaaatagagca------aaataagaggacttaactgcatggtgaaaaaaatatggaacttagctaaccactcaagtagatataaaattatttctaatt |
50551866 |
T |
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| Q |
406 |
tctttgcacaaatgccacgtttgagttcttgtctatcgcatgcgagttccttcctacatacggtatatcttaaagcttctctaaaattcagccttaaaat |
505 |
Q |
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| T |
50551865 |
tctttgcacaaatgccacgtttgagttcttgtctttcgcatgcgagttcctt----catacggtataacttaaagcttccctaaaattcagcctcaaaat |
50551770 |
T |
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| Q |
506 |
gtatggggaaaagttcaatcatttnnnnnnnnttggcaactaaatttgaaaataggacagcaaaaac-taaattgtttgtat |
586 |
Q |
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| T |
50551769 |
gtatggagaaaagttcaatcattttaaaaaaattgggaattaaatttgaaaataggtcatcaaaatcgtacattgtttgtat |
50551688 |
T |
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