View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14572_low_71 (Length: 237)

Name: NF14572_low_71
Description: NF14572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14572_low_71
NF14572_low_71
[»] chr2 (2 HSPs)
chr2 (17-78)||(15435525-15435586)
chr2 (31-79)||(45693794-45693842)
[»] chr8 (1 HSPs)
chr8 (31-79)||(37613025-37613073)
[»] chr5 (4 HSPs)
chr5 (31-79)||(6635637-6635685)
chr5 (29-79)||(7151183-7151233)
chr5 (29-79)||(32309883-32309933)
chr5 (31-79)||(6281433-6281481)
[»] chr4 (3 HSPs)
chr4 (31-79)||(24568399-24568447)
chr4 (30-79)||(19745778-19745827)
chr4 (30-79)||(19793979-19794028)
[»] chr1 (4 HSPs)
chr1 (32-79)||(30678629-30678676)
chr1 (31-79)||(10304952-10305000)
chr1 (31-79)||(25032787-25032835)
chr1 (31-79)||(29551449-29551497)
[»] chr7 (1 HSPs)
chr7 (31-69)||(38338877-38338915)
[»] chr6 (1 HSPs)
chr6 (27-79)||(31395620-31395672)
[»] chr3 (1 HSPs)
chr3 (31-79)||(48212722-48212770)


Alignment Details
Target: chr2 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 17 - 78
Target Start/End: Original strand, 15435525 - 15435586
Alignment:
Q  17 agtaatcaattccttttttgtttgtaacgactttgaatttatattgtatcgatataatctat 78  Q
    |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  15435525 agtaatcagttccatttttgtttgtaacgactttgaatttatattgtatcgatataatctat 15435586  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 79
Target Start/End: Complemental strand, 45693842 - 45693794
Alignment:
Q  31 tttttgtttgtaacgactttgaatttatattgtatcgatataatctatc 79  Q
    ||||||||| || ||||||||||||| ||||||||| ||||| ||||||    
T  45693842 tttttgtttttagcgactttgaatttctattgtatccatatactctatc 45693794  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 79
Target Start/End: Original strand, 37613025 - 37613073
Alignment:
Q  31 tttttgtttgtaacgactttgaatttatattgtatcgatataatctatc 79  Q
    ||||||||| |||||| ||||||||| ||||||||||||||| ||||||    
T  37613025 tttttgtttttaacgaatttgaatttgtattgtatcgatatactctatc 37613073  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 79
Target Start/End: Original strand, 6635637 - 6635685
Alignment:
Q  31 tttttgtttgtaacgactttgaatttatattgtatcgatataatctatc 79  Q
    ||||||||| |||||| |||||||||||||||||||||| || ||||||    
T  6635637 tttttgtttttaacgaatttgaatttatattgtatcgatgtactctatc 6635685  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 79
Target Start/End: Original strand, 7151183 - 7151233
Alignment:
Q  29 cttttttgtttgtaacgactttgaatttatattgtatcgatataatctatc 79  Q
    ||||||||||| |||||||||||||||| ||||||||| || || ||||||    
T  7151183 cttttttgtttttaacgactttgaatttgtattgtatcaatttactctatc 7151233  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 79
Target Start/End: Original strand, 32309883 - 32309933
Alignment:
Q  29 cttttttgtttgtaacgactttgaatttatattgtatcgatataatctatc 79  Q
    ||||||| ||| ||||||||||||||||||||| ||||||| || ||||||    
T  32309883 cttttttatttttaacgactttgaatttatattatatcgatgtactctatc 32309933  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 79
Target Start/End: Original strand, 6281433 - 6281481
Alignment:
Q  31 tttttgtttgtaacgactttgaatttatattgtatcgatataatctatc 79  Q
    ||||||||| || ||| ||||||||| ||||||||||||||| ||||||    
T  6281433 tttttgtttttagcgaatttgaatttgtattgtatcgatatactctatc 6281481  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 79
Target Start/End: Complemental strand, 24568447 - 24568399
Alignment:
Q  31 tttttgtttgtaacgactttgaatttatattgtatcgatataatctatc 79  Q
    ||||||||| || ||| |||||||||||||||||||||| |||||||||    
T  24568447 tttttgtttttagcgaatttgaatttatattgtatcgatgtaatctatc 24568399  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 79
Target Start/End: Original strand, 19745778 - 19745827
Alignment:
Q  30 ttttttgtttgtaacgactttgaatttatattgtatcgatataatctatc 79  Q
    |||||||||| |||||| |||| |||| ||||||||||||||| ||||||    
T  19745778 ttttttgtttttaacgaatttggatttgtattgtatcgatatactctatc 19745827  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 79
Target Start/End: Complemental strand, 19794028 - 19793979
Alignment:
Q  30 ttttttgtttgtaacgactttgaatttatattgtatcgatataatctatc 79  Q
    |||||||||| |||||| |||| |||| ||||||||||||||| ||||||    
T  19794028 ttttttgtttttaacgaatttggatttgtattgtatcgatatactctatc 19793979  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 79
Target Start/End: Original strand, 30678629 - 30678676
Alignment:
Q  32 ttttgtttgtaacgactttgaatttatattgtatcgatataatctatc 79  Q
    |||||||| |||| ||||||||||| ||||||||||||||| ||||||    
T  30678629 ttttgtttttaacaactttgaatttgtattgtatcgatatattctatc 30678676  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 79
Target Start/End: Original strand, 10304952 - 10305000
Alignment:
Q  31 tttttgtttgtaacgactttgaatttatattgtatcgatataatctatc 79  Q
    ||||||||| || | | |||||||||||||||||||||| |||||||||    
T  10304952 tttttgtttttatcaattttgaatttatattgtatcgatgtaatctatc 10305000  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 79
Target Start/End: Complemental strand, 25032835 - 25032787
Alignment:
Q  31 tttttgtttgtaacgactttgaatttatattgtatcgatataatctatc 79  Q
    ||||||||| || ||||||||||||| |||||||||||| || ||||||    
T  25032835 tttttgtttttagcgactttgaatttgtattgtatcgatgtactctatc 25032787  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 79
Target Start/End: Complemental strand, 29551497 - 29551449
Alignment:
Q  31 tttttgtttgtaacgactttgaatttatattgtatcgatataatctatc 79  Q
    ||||||||| || |||||||||| || |||||||||||| |||||||||    
T  29551497 tttttgtttttagcgactttgaaattgtattgtatcgatgtaatctatc 29551449  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 69
Target Start/End: Complemental strand, 38338915 - 38338877
Alignment:
Q  31 tttttgtttgtaacgactttgaatttatattgtatcgat 69  Q
    ||||||||| |||| ||||||||||||||||||||||||    
T  38338915 tttttgtttttaacaactttgaatttatattgtatcgat 38338877  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 79
Target Start/End: Original strand, 31395620 - 31395672
Alignment:
Q  27 tccttttttgtttgtaacgactttgaatttatattgtatcgatataatctatc 79  Q
    ||||||||||||| |||| |||||||||||  ||||||||||| || ||||||    
T  31395620 tccttttttgtttttaacaactttgaatttggattgtatcgatgtactctatc 31395672  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 79
Target Start/End: Original strand, 48212722 - 48212770
Alignment:
Q  31 tttttgtttgtaacgactttgaatttatattgtatcgatataatctatc 79  Q
    ||||||||| |||||||||||||||| ||||| |||||| || ||||||    
T  48212722 tttttgtttttaacgactttgaatttgtattgcatcgatgtactctatc 48212770  T

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