View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14572_low_72 (Length: 237)

Name: NF14572_low_72
Description: NF14572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14572_low_72
NF14572_low_72
[»] chr6 (2 HSPs)
chr6 (1-222)||(17433591-17433812)
chr6 (1-73)||(17454840-17454912)
[»] chr5 (5 HSPs)
chr5 (114-209)||(40699487-40699582)
chr5 (131-209)||(18237144-18237222)
chr5 (112-164)||(26072158-26072210)
chr5 (131-186)||(17190640-17190695)
chr5 (143-209)||(1248988-1249054)
[»] chr4 (4 HSPs)
chr4 (112-205)||(12678957-12679050)
chr4 (157-196)||(37306525-37306564)
chr4 (113-191)||(44832491-44832569)
chr4 (131-211)||(16650461-16650541)
[»] chr8 (4 HSPs)
chr8 (112-184)||(12519969-12520043)
chr8 (112-209)||(33440512-33440609)
chr8 (112-172)||(1311485-1311545)
chr8 (142-198)||(45058013-45058069)
[»] chr3 (2 HSPs)
chr3 (131-209)||(38602903-38602981)
chr3 (117-186)||(54140814-54140883)
[»] chr1 (1 HSPs)
chr1 (112-170)||(44477880-44477938)
[»] chr2 (1 HSPs)
chr2 (131-190)||(9132268-9132327)
[»] chr7 (4 HSPs)
chr7 (112-178)||(22786192-22786258)
chr7 (112-190)||(29310449-29310527)
chr7 (157-209)||(22159085-22159137)
chr7 (157-209)||(22217793-22217845)


Alignment Details
Target: chr6 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 17433812 - 17433591
Alignment:
Q  1 tgattgggtgaacatatagtctctatactacaaggaatcaacatttataatttgtttcaatctcactttcacaaacataacactagttcatttctttgtc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  17433812 tgattgggtgaacatatagtctctatactacaaggaatcaacatttataatttgtttcaatctcactttcaaaaacataacactagttcatttctttgtc 17433713  T
Q  101 acactctcttaacactttggaaatgaatttcacataaaatggtgagactcacatagatttcacctaataagaaagtgattgttagaaagaaagtgttcct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  17433712 acactctcttaacactttggaaatgaatttcacataaaatggtgagactcacatagatttcacctaataagaaagtgattgttagaaagaaagcgttcct 17433613  T
Q  201 aacatttctttcgtagggtatt 222  Q
    |||||||||||||| |||||||    
T  17433612 aacatttctttcgttgggtatt 17433591  T

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Target: chr6; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 17454912 - 17454840
Alignment:
Q  1 tgattgggtgaacatatagtctctatactacaaggaatcaacatttataatttgtttcaatctcactttcaca 73  Q
    ||||||||||||| || |||||||| |||||||| | |||| ||||||||||| |||||||||||||||||||    
T  17454912 tgattgggtgaacgtaaagtctctagactacaagtagtcaatatttataatttatttcaatctcactttcaca 17454840  T

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Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 114 - 209
Target Start/End: Complemental strand, 40699582 - 40699487
Alignment:
Q  114 actttggaaatgaatttcacataaaatggtgagactcacatagatttcacctaataagaaagtgattgttagaaagaaagtgttcctaacatttct 209  Q
    |||||||||||| ||  || ||||| | ||||||| ||||| | ||||||| ||||||||||||| ||||||||||| |||||||||| |||||||    
T  40699582 actttggaaatggatcccaaataaagtagtgagacccacatgggtttcacccaataagaaagtgagtgttagaaagagagtgttcctagcatttct 40699487  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 131 - 209
Target Start/End: Complemental strand, 18237222 - 18237144
Alignment:
Q  131 cacataaaatggtgagactcacatagatttcacctaataagaaagtgattgttagaaagaaagtgttcctaacatttct 209  Q
    |||||||| ||||||||| |||||  |||||||| || | ||| |||| ||||||||||| ||||||| ||||||||||    
T  18237222 cacataaagtggtgagacccacatgaatttcacccaagaggaaggtgagtgttagaaagagagtgttcataacatttct 18237144  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 164
Target Start/End: Complemental strand, 26072210 - 26072158
Alignment:
Q  112 acactttggaaatgaatttcacataaaatggtgagactcacatagatttcacc 164  Q
    |||||||||||||||||| |||||||| |||||||||  |||| |||||||||    
T  26072210 acactttggaaatgaattccacataaagtggtgagacatacattgatttcacc 26072158  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 186
Target Start/End: Complemental strand, 17190695 - 17190640
Alignment:
Q  131 cacataaaatggtgagactcacatagatttcacctaataagaaagtgattgttaga 186  Q
    |||||||| ||||||||| ||||||  |||||||||||| |||||||| |||||||    
T  17190695 cacataaagtggtgagacccacataagtttcacctaataggaaagtgagtgttaga 17190640  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 209
Target Start/End: Complemental strand, 1249054 - 1248988
Alignment:
Q  143 tgagactcacatagatttcacctaataagaaagtgattgttagaaagaaagtgttcctaacatttct 209  Q
    |||||||||||| ||||||| | ||||| | ||||| ||||||||| | |||||||||| |||||||    
T  1249054 tgagactcacatggatttcatccaataaaatagtgagtgttagaaaaagagtgttcctatcatttct 1248988  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 112 - 205
Target Start/End: Original strand, 12678957 - 12679050
Alignment:
Q  112 acactttggaaatgaatttcacataaaatggtgagactcacatagatttcacctaataagaaagtgattgttagaaagaaagtgttcctaacat 205  Q
    ||||||| |||||| || ||| ||||| |||||||||||| ||   ||||| ||||||  | ||||| ||||||||||||||||||||||||||    
T  12678957 acactttagaaatggatctcatataaagtggtgagactcatatgagtttcatctaatataagagtgaatgttagaaagaaagtgttcctaacat 12679050  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 196
Target Start/End: Original strand, 37306525 - 37306564
Alignment:
Q  157 atttcacctaataagaaagtgattgttagaaagaaagtgt 196  Q
    |||||||| ||||||||||||| |||||||||||||||||    
T  37306525 atttcacccaataagaaagtgagtgttagaaagaaagtgt 37306564  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 191
Target Start/End: Complemental strand, 44832569 - 44832491
Alignment:
Q  113 cactttggaaatgaatttcacataaaatggtgagactcacatagatttcacctaataagaaagtgattgttagaaagaa 191  Q
    ||||||||||||| | | |||||||||||||| |||  ||||  |||||||| ||||| ||||||| || |||||||||    
T  44832569 cactttggaaatggaatccacataaaatggtgggacatacattaatttcacccaataaaaaagtgagtgatagaaagaa 44832491  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 211
Target Start/End: Complemental strand, 16650541 - 16650461
Alignment:
Q  131 cacataaaatggtgagactcacatagatttcacctaataagaaagtgattgttagaaagaaagtgttcctaacatttcttt 211  Q
    |||||||  ||| ||||| || ||| |||| ||| ||||| ||||||| ||||||||||| ||||||||||| || |||||    
T  16650541 cacataagttggcgagacccaaataaatttgacccaataaaaaagtgaatgttagaaagagagtgttcctaatatctcttt 16650461  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 112 - 184
Target Start/End: Complemental strand, 12520043 - 12519969
Alignment:
Q  112 acactttggaaatgaatttcacataaaatgg--tgagactcacatagatttcacctaataagaaagtgattgtta 184  Q
    ||||||| ||||||||| ||||||||| |||  |||||||||||| ||||||||||||||| | ||||| |||||    
T  12520043 acactttcgaaatgaatctcacataaagtggcttgagactcacatggatttcacctaataaaagagtgaatgtta 12519969  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 112 - 209
Target Start/End: Complemental strand, 33440609 - 33440512
Alignment:
Q  112 acactttggaaatgaatttcacataaaatggtgagactcacatagatttcacctaataagaaagtgattgttagaaagaaagtgttcctaacatttct 209  Q
    |||| ||||||||| ||  |||||||| ||||||||| |||||   |||||||||||| || ||||| ||||||||||| | | |||||| |||||||    
T  33440609 acacattggaaatggatcccacataaagtggtgagacccacatgagtttcacctaataggagagtgagtgttagaaagagaatattcctagcatttct 33440512  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 172
Target Start/End: Complemental strand, 1311545 - 1311485
Alignment:
Q  112 acactttggaaatgaatttcacataaaatggtgagactcacatagatttcacctaataaga 172  Q
    |||||||||||||| ||  |||||||||||||||||| | ||| | ||||||| |||||||    
T  1311545 acactttggaaatggatcccacataaaatggtgagacccgcatgggtttcacccaataaga 1311485  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 198
Target Start/End: Original strand, 45058013 - 45058069
Alignment:
Q  142 gtgagactcacatagatttcacctaataagaaagtgattgttagaaagaaagtgttc 198  Q
    ||||||||||||||  ||||| | ||||||| ||||| ||||||| |||||||||||    
T  45058013 gtgagactcacataagtttcaaccaataagagagtgagtgttagagagaaagtgttc 45058069  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 131 - 209
Target Start/End: Original strand, 38602903 - 38602981
Alignment:
Q  131 cacataaaatggtgagactcacatagatttcacctaataagaaagtgattgttagaaagaaagtgttcctaacatttct 209  Q
    |||||||| | |||||||||||||   ||||||| |||| || ||||| || ||||||||||||||||||| |||||||    
T  38602903 cacataaagtagtgagactcacatgagtttcacccaataggagagtgagtgctagaaagaaagtgttcctagcatttct 38602981  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 117 - 186
Target Start/End: Original strand, 54140814 - 54140883
Alignment:
Q  117 ttggaaatgaatttcacataaaatggtgagactcacatagatttcacctaataagaaagtgattgttaga 186  Q
    ||||||||| ||  |||||||| ||||||||||| |||  |||||||||||||||| ||||| |||||||    
T  54140814 ttggaaatggatcccacataaagtggtgagactcgcatgaatttcacctaataagagagtgagtgttaga 54140883  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 112 - 170
Target Start/End: Original strand, 44477880 - 44477938
Alignment:
Q  112 acactttggaaatgaatttcacataaaatggtgagactcacatagatttcacctaataa 170  Q
    ||||||| ||||||||||||||||||||||| ||||||| ||||| ||| | |||||||    
T  44477880 acactttagaaatgaatttcacataaaatggcgagactcgcataggttttatctaataa 44477938  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 190
Target Start/End: Complemental strand, 9132327 - 9132268
Alignment:
Q  131 cacataaaatggtgagactcacatagatttcacctaataagaaagtgattgttagaaaga 190  Q
    |||||||||||||||||| ||| | | ||||||| ||||||| ||||| |||||||||||    
T  9132327 cacataaaatggtgagacccacttgggtttcacccaataagagagtgagtgttagaaaga 9132268  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 178
Target Start/End: Complemental strand, 22786258 - 22786192
Alignment:
Q  112 acactttggaaatgaatttcacataaaatggtgagactcacatagatttcacctaataagaaagtga 178  Q
    |||||||||||||| |   |||||||| |||||||||  |||| ||||||||||||||| |||||||    
T  22786258 acactttggaaatggaacccacataaagtggtgagacatacattgatttcacctaataaaaaagtga 22786192  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 190
Target Start/End: Complemental strand, 29310527 - 29310449
Alignment:
Q  112 acactttggaaatgaatttcacataaaatggtgagactcacatagatttcacctaataagaaagtgattgttagaaaga 190  Q
    ||||| |||||||| ||  |||||||| ||||||||| |||||   ||||||| ||||| ||||||| |||||||||||    
T  29310527 acactatggaaatggatcccacataaagtggtgagacccacatgagtttcacccaataaaaaagtgagtgttagaaaga 29310449  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 209
Target Start/End: Original strand, 22159085 - 22159137
Alignment:
Q  157 atttcacctaataagaaagtgattgttagaaagaaagtgttcctaacatttct 209  Q
    |||||| | ||||| | ||||| ||||||||||| ||||||||||||||||||    
T  22159085 atttcaaccaataaaagagtgagtgttagaaagatagtgttcctaacatttct 22159137  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 209
Target Start/End: Original strand, 22217793 - 22217845
Alignment:
Q  157 atttcacctaataagaaagtgattgttagaaagaaagtgttcctaacatttct 209  Q
    |||||| | ||||| | ||||| ||||||||||| ||||||||||||||||||    
T  22217793 atttcaaccaataaaagagtgagtgttagaaagatagtgttcctaacatttct 22217845  T

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