View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14572_low_74 (Length: 228)

Name: NF14572_low_74
Description: NF14572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14572_low_74
NF14572_low_74
[»] chr1 (3 HSPs)
chr1 (1-228)||(10660322-10660548)
chr1 (156-204)||(10468031-10468079)
chr1 (160-204)||(6152599-6152643)
[»] chr8 (2 HSPs)
chr8 (134-204)||(41194835-41194905)
chr8 (156-204)||(29444909-29444957)
[»] chr7 (1 HSPs)
chr7 (134-198)||(12017119-12017183)
[»] chr3 (1 HSPs)
chr3 (153-197)||(50545574-50545618)
[»] chr2 (3 HSPs)
chr2 (153-201)||(10590916-10590964)
chr2 (159-203)||(30978278-30978322)
chr2 (167-204)||(15041171-15041208)
[»] chr4 (1 HSPs)
chr4 (141-200)||(8290547-8290606)
[»] chr6 (2 HSPs)
chr6 (134-204)||(11094120-11094190)
chr6 (176-204)||(3182783-3182811)
[»] chr5 (1 HSPs)
chr5 (128-204)||(18985310-18985387)


Alignment Details
Target: chr1 (Bit Score: 184; Significance: 1e-99; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 10660322 - 10660548
Alignment:
Q  1 tggtcttcttttttcctcattgattgggtaatggacaaaattgtaagtaaaattgaatattgaaattggaataaaatagagtgacactagaagtttgtat 100  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10660322 tggtcttctttttttctcattgattgggtaatggacaaaattgtaagtaaaattgaatattgaaattggaataaaatagagtgacactagaagtttgtat 10660421  T
Q  101 ccctttatatataggtacnnnnnnnnntcaatgatttgattggataaagaatgacaaaattataaataaaatagtttaagtgaatggtaaaattgaaaga 200  Q
    ||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||    
T  10660422 ccctttatatataggtac-aaaaaaaatcaatgatttgattggataaagaatgacaaaattataaataaaatagtttaaatgaatggtagaattgaaaga 10660520  T
Q  201 aaaacaagatgccaaaagttgatgttcc 228  Q
    ||||||||||||||||||||||||||||    
T  10660521 aaaacaagatgccaaaagttgatgttcc 10660548  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 156 - 204
Target Start/End: Original strand, 10468031 - 10468079
Alignment:
Q  156 aaaattataaataaaatagtttaagtgaatggtaaaattgaaagaaaaa 204  Q
    |||||| ||||||||| |||||||||||||| |||||||||||||||||    
T  10468031 aaaattgtaaataaaaaagtttaagtgaatgataaaattgaaagaaaaa 10468079  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 204
Target Start/End: Original strand, 6152599 - 6152643
Alignment:
Q  160 ttataaataaaatagtttaagtgaatggtaaaattgaaagaaaaa 204  Q
    |||||||||||||||||||||| || |||||| ||||||||||||    
T  6152599 ttataaataaaatagtttaagttaacggtaaagttgaaagaaaaa 6152643  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 134 - 204
Target Start/End: Complemental strand, 41194905 - 41194835
Alignment:
Q  134 atttgattggataaagaatgacaaaattataaataaaatagtttaagtgaatggtaaaattgaaagaaaaa 204  Q
    |||| |||||||||||||||| |||||| ||||||||||| ||||| |||||||||||| || ||||||||    
T  41194905 atttaattggataaagaatgataaaattgtaaataaaataatttaaatgaatggtaaaaatgcaagaaaaa 41194835  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 204
Target Start/End: Original strand, 29444909 - 29444957
Alignment:
Q  156 aaaattataaataaaatagtttaagtgaatggtaaaattgaaagaaaaa 204  Q
    |||||||||||||||| | ||||||| || | |||||||||||||||||    
T  29444909 aaaattataaataaaacactttaagtaaaggataaaattgaaagaaaaa 29444957  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 134 - 198
Target Start/End: Complemental strand, 12017183 - 12017119
Alignment:
Q  134 atttgattggataaagaatgacaaaattataaataaaatagtttaagtgaatggtaaaattgaaa 198  Q
    |||||||||| ||||||| ||||||||| ||||||||||||||||| |||| |  ||||||||||    
T  12017183 atttgattgggtaaagaaggacaaaattgtaaataaaatagtttaaatgaaagaaaaaattgaaa 12017119  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 197
Target Start/End: Original strand, 50545574 - 50545618
Alignment:
Q  153 gacaaaattataaataaaatagtttaagtgaatggtaaaattgaa 197  Q
    |||||||||||||||| |||||||||| | |||||||||||||||    
T  50545574 gacaaaattataaatacaatagtttaaataaatggtaaaattgaa 50545618  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 201
Target Start/End: Original strand, 10590916 - 10590964
Alignment:
Q  153 gacaaaattataaataaaatagtttaagtgaatggtaaaattgaaagaa 201  Q
    ||||||||||||||||||||||||||| | ||  |||||||||||||||    
T  10590916 gacaaaattataaataaaatagtttaaataaagagtaaaattgaaagaa 10590964  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 203
Target Start/End: Complemental strand, 30978322 - 30978278
Alignment:
Q  159 attataaataaaatagtttaagtgaatggtaaaattgaaagaaaa 203  Q
    ||||||| ||||||| ||||| |||||||||||||||||||||||    
T  30978322 attataattaaaataatttaaatgaatggtaaaattgaaagaaaa 30978278  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 204
Target Start/End: Original strand, 15041171 - 15041208
Alignment:
Q  167 taaaatagtttaagtgaatggtaaaattgaaagaaaaa 204  Q
    ||||||||||||| | ||||||||||||||||||||||    
T  15041171 taaaatagtttaaataaatggtaaaattgaaagaaaaa 15041208  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 200
Target Start/End: Complemental strand, 8290606 - 8290547
Alignment:
Q  141 tggataaagaatgacaaaattataaataaaatagtttaagtgaatggtaaaattgaaaga 200  Q
    |||||||||||| |||||||| ||||||| ||||||| | | |||||||||| |||||||    
T  8290606 tggataaagaataacaaaattgtaaataacatagtttgaataaatggtaaaaatgaaaga 8290547  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 204
Target Start/End: Complemental strand, 11094190 - 11094120
Alignment:
Q  134 atttgattggataaagaatgacaaaattataaataaaatagtttaagtgaatggtaaaattgaaagaaaaa 204  Q
    ||||||||||  |||||| || ||| ||| |||||||||||||||| | || |||||||||| ||||||||    
T  11094190 atttgattggcaaaagaacgaaaaatttaaaaataaaatagtttaaattaagggtaaaattggaagaaaaa 11094120  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 204
Target Start/End: Complemental strand, 3182811 - 3182783
Alignment:
Q  176 ttaagtgaatggtaaaattgaaagaaaaa 204  Q
    |||||||||||||||||||||||||||||    
T  3182811 ttaagtgaatggtaaaattgaaagaaaaa 3182783  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 128 - 204
Target Start/End: Original strand, 18985310 - 18985387
Alignment:
Q  128 tcaatgatttgattggataaagaatgacaaaattataaat-aaaatagtttaagtgaatggtaaaattgaaagaaaaa 204  Q
    ||||| |||||| ||| |||| ||| |||||||||||||| |||||||||||| | || | |||||||| ||||||||    
T  18985310 tcaattatttgactgggtaaacaataacaaaattataaataaaaatagtttaaataaaagataaaattggaagaaaaa 18985387  T

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