View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14572_low_8 (Length: 593)
Name: NF14572_low_8
Description: NF14572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14572_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 552; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 552; E-Value: 0
Query Start/End: Original strand, 1 - 564
Target Start/End: Complemental strand, 41543228 - 41542665
Alignment:
| Q |
1 |
cattcccggcagaaacctacaaaaagtaaaaggaaaataacgacgaaacatggttaacttcctatttgaaatgaatattcagcaagagaaacatactata |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41543228 |
cattcccggcagaaacctacaaaaagtaaaaggaaaataacgacgaaacatggttaacttcctatttgaaatgaatattcagcaagagaaacatactata |
41543129 |
T |
|
| Q |
101 |
aaaatcagaaaatggttatattcaccaaaatccaccggattgagagatccaaactaaaactaaaaacagaaataaatcgatgaagtgcagaaaatctacc |
200 |
Q |
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||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41543128 |
aaaatcagataatggttatattcaccaaaatccaccggattaagagatccaaactaaaactaaaaacagaaataaatcgatgaagtgcagaaaatctacc |
41543029 |
T |
|
| Q |
201 |
acattgaggttatggcgactgcactgcatccggacacatatatcattaatagcatggtccacaactgactggtctgcattgtttaaataaatatagaaaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41543028 |
acattgaggttatggcgactgcactgcatccggacacatatatcattaatagcatggtccacaactgactggtctgcattgtttaaataaatatagaaaa |
41542929 |
T |
|
| Q |
301 |
catgaaaagaatgttagtttatgtcaaggggacgataaaccattaccctacaaacaaatctttcaagaattagtaaatatcagatcagggcaccagcttt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41542928 |
catgaaaagaatgttagtttatgtcaaggggacgataaaccattaccctacaaacaaatctttcaagaattagtaaatatcagatcagggcaccagcttt |
41542829 |
T |
|
| Q |
401 |
taaacagtctcacatctataagattgtgacaaactaaaccagagtacaatgaagaatcttagtaagattctgaccaaaggcttctgaataattctctatt |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41542828 |
taaacagtctcacatctataagattgtgacaaactaaaccagagtacaatgaagaatcttagtaagattctgaccaaaggcttctgaataattctctatt |
41542729 |
T |
|
| Q |
501 |
aagccccaagacaaatacagactcgacattgacacagacatgtcaacacggtaaaatttgaagg |
564 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41542728 |
aagccccaagacagatacagactcgacattgacacagacatgtcaacacggtaaaatttgaagg |
41542665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 502
Target Start/End: Complemental strand, 41559371 - 41558872
Alignment:
| Q |
1 |
cattcccggcagaaacctacaaaaagtaaaaggaaaataacgacgaaacatggttaacttcctatttgaaatgaatattcagcaagagaaacatactata |
100 |
Q |
| |
|
||||||||||||||||||||||||| |||| |||| ||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||| || |
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| T |
41559371 |
cattcccggcagaaacctacaaaaaaaaaaatgaaagtaacgacgaaacatggttaactttctatttgaaatgaatatacagcaagaaaaacatactgta |
41559272 |
T |
|
| Q |
101 |
aaaatcagaaaatggttatattcaccaaaatccaccggattgagagatccaaactaaaactaaaaacagaaataaatcgatgaagtgcagaaaatctacc |
200 |
Q |
| |
|
|||||||| ||| || |||||||||||||||||| ||| |||||||||||| |||| ||||||||||||||||| |||||||||||||||||||||| |
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| T |
41559271 |
aaaatcagttgatgcttttattcaccaaaatccaccaaattaagagatccaaacgaaaa-taaaaacagaaataaattgatgaagtgcagaaaatctacc |
41559173 |
T |
|
| Q |
201 |
acattgaggttatggcgactgcactgcatccggacacatatatcattaatagcatggtccacaactgactggtctgcattgtttaaataaatatagaaaa |
300 |
Q |
| |
|
||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||| | | || | |
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| T |
41559172 |
acattgaggttatggcggctgcactgcatcaagacacatatatcattaatagcatggtccacaactgactggtctgcaatgtgaaaagaaacaaaaaata |
41559073 |
T |
|
| Q |
301 |
catgaaaagaatgttagtttatgtcaag---gggacgataaaccattaccctacaaacaaatctttcaagaattagtaa-atatcagatcagggcaccag |
396 |
Q |
| |
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|| ||||| | || ||| ||||||||| ||| |||| ||| |||||||||||| |||| ||| ||||||||| || ||| ||| ||| | || || |
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|
| T |
41559072 |
cacgaaaaagaagtcagtatatgtcaagggtggggagatagacctttaccctacaaataaatattttaagaattagcaatatagcag-tcatgatactag |
41558974 |
T |
|
| Q |
397 |
cttttaaacagtctcacatctataagattgtgacaaactaaaccagagtacaatgaagaatcttagtaagattctgaccaaaggcttctgaataattctc |
496 |
Q |
| |
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| |||||||| ||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||| || | ||||||||| ||||||||||| |
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| T |
41558973 |
catttaaacaatct--catctataagattgacgcaaactaaacctgagtacaatgaagaatcttagtaagtttat--acaaaggcttatgaataattctt |
41558878 |
T |
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