View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14572_low_82 (Length: 201)
Name: NF14572_low_82
Description: NF14572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14572_low_82 |
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Alignment Details
Target: chr3 (Bit Score: 97; Significance: 7e-48; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 25 - 161
Target Start/End: Complemental strand, 3713985 - 3713849
Alignment:
| Q |
25 |
catgcttcctgggagttgggaccttttgactgaacactgttgcaaatctgactaatgttacatagcttttgaatccctaatattaataagggaaaaacat |
124 |
Q |
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| T |
3713985 |
catgtttcctgggagttgggaccttctgactgaacattgttgcaaatctgactaatgttacatagcttttggatccctagcattaatagaggaaaaacat |
3713886 |
T |
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| Q |
125 |
aagttaaaacgattttataacgataacccttggattt |
161 |
Q |
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| T |
3713885 |
aagttaaaacgattttctaacgataacccttcgattt |
3713849 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 21 - 145
Target Start/End: Complemental strand, 3706123 - 3705999
Alignment:
| Q |
21 |
taggcatgcttcctgggagttgggaccttttgactgaacactgttgcaaatctgactaatgttacatagcttttgaatccctaatattaataagggaaaa |
120 |
Q |
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| T |
3706123 |
taggcatgtttactggcagttgggatcttctgactgaacactgctgcaaatctgactaatgttatatagctttgggatcgctaacattaataggagaaaa |
3706024 |
T |
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| Q |
121 |
acataagttaaaacgattttataac |
145 |
Q |
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| T |
3706023 |
acataagttaaaacgattttctaac |
3705999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 16 - 90
Target Start/End: Complemental strand, 3702753 - 3702679
Alignment:
| Q |
16 |
attcttaggcatgcttcctgggagttgggaccttttgactgaacactgttgcaaatctgactaatgttacatagc |
90 |
Q |
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| T |
3702753 |
attcttaggcatgcttcctgggagatgggaccttttgactgaacagtgttgcaaatgtgactaatgttacatagc |
3702679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 185
Target Start/End: Complemental strand, 3702679 - 3702645
Alignment:
| Q |
151 |
cccttggatttgatctaagtcatctaacatattag |
185 |
Q |
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| T |
3702679 |
cccttgaatttgatctaagtcatctaacatattag |
3702645 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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