View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14573_high_1 (Length: 518)

Name: NF14573_high_1
Description: NF14573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14573_high_1
NF14573_high_1
[»] chr5 (2 HSPs)
chr5 (18-319)||(22918022-22918332)
chr5 (326-518)||(22918537-22918731)
[»] chr3 (4 HSPs)
chr3 (22-172)||(43787255-43787405)
chr3 (417-509)||(3522766-3522858)
chr3 (24-143)||(36155551-36155677)
chr3 (326-381)||(43787478-43787533)
[»] chr1 (1 HSPs)
chr1 (28-143)||(47742112-47742234)
[»] chr6 (3 HSPs)
chr6 (28-143)||(2267334-2267455)
chr6 (38-70)||(26533525-26533557)
chr6 (38-70)||(26533638-26533670)
[»] chr8 (2 HSPs)
chr8 (28-143)||(18208165-18208288)
chr8 (28-143)||(16804817-16804939)
[»] chr7 (1 HSPs)
chr7 (38-70)||(33868397-33868429)


Alignment Details
Target: chr5 (Bit Score: 238; Significance: 1e-131; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 18 - 319
Target Start/End: Original strand, 22918022 - 22918332
Alignment:
Q  18 aaagaaacatttcatgataaattgcggaaaacttctttgtaaacaacatttgattgatgcaagccccttcatcgtctgttagaagtattttcagcccact 117  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  22918022 aaagaaacatttcatgataaattgcggaagacttctttgtaaacaacatttaattgatgcaagccccttcatcgtctgttagaagtattttcagcccact 22918121  T
Q  118 cctagatgtaacacgtgaaatagcaataatctgatagtcaggaaaaatcgtgaaa-tagc--------aatattgctgatatcagtcagtggacttttcc 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||        |  |||| ||||||||||||||||||||||||    
T  22918122 cctagatgtaacacgtgaaatagcaataatctgatagtcaggaaaaatcatgaaagtggctgatgctgaccattgttgatatcagtcagtggacttttcc 22918221  T
Q  209 ctcatgaccttttcgtttcctacttggcttcatcttaattaattcgatatgcttgtatgttctgttgaaaacgttttgagttcatgaagaaatgtagaac 308  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  22918222 ctcatgagcttttcgtttcctacttggcttcatcttaattaattcgatatgcttgtatgttctgttgaaaacattttgagttcatgaagaaatgtagaac 22918321  T
Q  309 ctgttatgaat 319  Q
    |||||||||||    
T  22918322 ctgttatgaat 22918332  T

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Target: chr5; HSP #2
Raw Score: 168; E-Value: 8e-90
Query Start/End: Original strand, 326 - 518
Target Start/End: Original strand, 22918537 - 22918731
Alignment:
Q  326 atattaagagtgtaagtttaaaaagacatgtaaagcaagatatttcaccacactaagttacataatttttatctcctataaaa--aatacattaatatat 423  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||    
T  22918537 atattaagagtgtaagtttaaaaagatatgtaaagcaagatatttcaccacactaagttacataatttttatctcctataaaaaaaatacattaatatat 22918636  T
Q  424 aggtgttaggaataagttatagttatctcatataaagtgtgtcttcgtgggaaaaatattaaacaaattgatgatgatatatttttgtttctgtg 518  Q
    ||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||    
T  22918637 aggtgataggaataagttatagttatctcatataaagtgtgtcttcatgggaaaaatattaaacaaactgatgatgatatatttttgtttctgtg 22918731  T

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Target: chr3 (Bit Score: 127; Significance: 2e-65; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 22 - 172
Target Start/End: Original strand, 43787255 - 43787405
Alignment:
Q  22 aaacatttcatgataaattgcggaaaacttctttgtaaacaacatttgattgatgcaagccccttcatcgtctgttagaagtattttcagcccactccta 121  Q
    |||||||| |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  43787255 aaacattttatgataaattacggaagacttctttgtaaacaacatttgattgatgcaagccccttcatcgtctcttagaagtattttcagcccactccta 43787354  T
Q  122 gatgtaacacgtgaaatagcaataatctgatagtcaggaaaaatcgtgaaa 172  Q
    ||||||||| ||||||||||||||||||||||||||||||||||| |||||    
T  43787355 gatgtaacatgtgaaatagcaataatctgatagtcaggaaaaatcatgaaa 43787405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 417 - 509
Target Start/End: Original strand, 3522766 - 3522858
Alignment:
Q  417 aatatataggtgttaggaataagttatagttatctcatataaagtgtgtcttcgtgggaaaaatattaaacaaattgatgatgatatattttt 509  Q
    ||||||||||||| ||||||||||||||||||||| ||||||||||||||||| ||||||| |||||||||||| |||||||||||| |||||    
T  3522766 aatatataggtgtgaggaataagttatagttatcttatataaagtgtgtcttcatgggaaacatattaaacaaactgatgatgatattttttt 3522858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 24 - 143
Target Start/End: Complemental strand, 36155677 - 36155551
Alignment:
Q  24 acatttcatgataaattgcggaaaacttctttgtaaacaacatttga-------ttgatgcaagccccttcatcgtctgttagaagtattttcagcccac 116  Q
    ||||||||| |||||||||||||||||||||||||||| ||||| ||       ||||||||||| || || |||||||| |||||||||||||||||||    
T  36155677 acatttcataataaattgcggaaaacttctttgtaaacgacattcgaagtagtgttgatgcaagcaccatcgtcgtctgtcagaagtattttcagcccac 36155578  T
Q  117 tcctagatgtaacacgtgaaatagcaa 143  Q
    ||||||| || ||||||||||||||||    
T  36155577 tcctagaagtcacacgtgaaatagcaa 36155551  T

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Target: chr3; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 326 - 381
Target Start/End: Original strand, 43787478 - 43787533
Alignment:
Q  326 atattaagagtgtaagtttaaaaagacatgtaaagcaagatatttcaccacactaa 381  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43787478 atattaagagtgtaagtttaaaaagacatgtaaagcaagatatttcaccacactaa 43787533  T

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Target: chr1 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 28 - 143
Target Start/End: Complemental strand, 47742234 - 47742112
Alignment:
Q  28 ttcatgataaattgcggaaaacttctttgtaaacaacatttga-------ttgatgcaagccccttcatcgtctgttagaagtattttcagcccactcct 120  Q
    |||||||||||||||| ||||||||||||||||| ||||||||       |||||||||||||| || |||||| | |||||||||||||||||||||||    
T  47742234 ttcatgataaattgcgaaaaacttctttgtaaacgacatttgaagtacttttgatgcaagccccatcttcgtctatcagaagtattttcagcccactcct 47742135  T
Q  121 agatgtaacacgtgaaatagcaa 143  Q
    ||| || ||||||||||||||||    
T  47742134 agaagtcacacgtgaaatagcaa 47742112  T

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Target: chr6 (Bit Score: 61; Significance: 6e-26; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 28 - 143
Target Start/End: Original strand, 2267334 - 2267455
Alignment:
Q  28 ttcatgataaattgcggaaaacttctttgtaaacaacatttga-------ttgatgcaagccccttcatcgtctgttagaagtattttcagcccactcct 120  Q
    |||||||||||||||||||||||||||||||||| ||||||||       ||||||||| |||| || || ||||| |||||||||||||||||||||||    
T  2267334 ttcatgataaattgcggaaaacttctttgtaaacgacatttgaagtattgttgatgcaa-ccccatcgtcttctgtcagaagtattttcagcccactcct 2267432  T
Q  121 agatgtaacacgtgaaatagcaa 143  Q
    ||| || ||||||||||||||||    
T  2267433 agaagtcacacgtgaaatagcaa 2267455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 38 - 70
Target Start/End: Complemental strand, 26533557 - 26533525
Alignment:
Q  38 attgcggaaaacttctttgtaaacaacatttga 70  Q
    ||||||||||| |||||||||||||||||||||    
T  26533557 attgcggaaaatttctttgtaaacaacatttga 26533525  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 38 - 70
Target Start/End: Complemental strand, 26533670 - 26533638
Alignment:
Q  38 attgcggaaaacttctttgtaaacaacatttga 70  Q
    ||||||||||| |||||||||||||||||||||    
T  26533670 attgcggaaaatttctttgtaaacaacatttga 26533638  T

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Target: chr8 (Bit Score: 54; Significance: 9e-22; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 28 - 143
Target Start/End: Complemental strand, 18208288 - 18208165
Alignment:
Q  28 ttcatgataaa-ttgcggaaaacttctttgtaaacaacatttga-------ttgatgcaagccccttcatcgtctgttagaagtattttcagcccactcc 119  Q
    ||||||||||| ||||| ||||||||||||||||| ||||||||       |||||||||||||| || || ||||| |||| |||||||||||||||||    
T  18208288 ttcatgataaaattgcgaaaaacttctttgtaaacgacatttgaagtattgttgatgcaagccccatcgtcatctgtcagaaatattttcagcccactcc 18208189  T
Q  120 tagatgtaacacgtgaaatagcaa 143  Q
    |||| || ||||||||||||||||    
T  18208188 tagaagtcacacgtgaaatagcaa 18208165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 28 - 143
Target Start/End: Complemental strand, 16804939 - 16804817
Alignment:
Q  28 ttcatgataaattgcggaaaacttctttgtaaacaacatttga-------ttgatgcaagccccttcatcgtctgttagaagtattttcagcccactcct 120  Q
    |||||||||||||||| |||||||||||||| |  ||||||||       |||||||||||||| || |||||| | |||||||||||||||||||||||    
T  16804939 ttcatgataaattgcgaaaaacttctttgtacatgacatttgaagtacttttgatgcaagccccatcgtcgtctatcagaagtattttcagcccactcct 16804840  T
Q  121 agatgtaacacgtgaaatagcaa 143  Q
    ||| || ||| ||||||||||||    
T  16804839 agaagtcacatgtgaaatagcaa 16804817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 38 - 70
Target Start/End: Complemental strand, 33868429 - 33868397
Alignment:
Q  38 attgcggaaaacttctttgtaaacaacatttga 70  Q
    ||||||||||| |||||||||||||||||||||    
T  33868429 attgcggaaaatttctttgtaaacaacatttga 33868397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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