View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14573_high_12 (Length: 238)

Name: NF14573_high_12
Description: NF14573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14573_high_12
NF14573_high_12
[»] chr4 (22 HSPs)
chr4 (1-223)||(49976575-49976798)
chr4 (57-220)||(26963292-26963457)
chr4 (7-223)||(24287977-24288196)
chr4 (36-223)||(10739286-10739479)
chr4 (36-223)||(10953055-10953248)
chr4 (36-187)||(10733229-10733386)
chr4 (36-187)||(10946998-10947155)
chr4 (5-223)||(48160948-48161167)
chr4 (73-187)||(26956812-26956929)
chr4 (65-187)||(50168644-50168769)
chr4 (21-189)||(6257186-6257360)
chr4 (21-187)||(33458249-33458422)
chr4 (5-187)||(48167167-48167351)
chr4 (96-188)||(4632872-4632964)
chr4 (36-154)||(3769587-3769710)
chr4 (21-142)||(33461421-33461547)
chr4 (97-182)||(34308060-34308144)
chr4 (1-124)||(44831658-44831787)
chr4 (68-157)||(19686341-19686433)
chr4 (65-97)||(4632442-4632474)
chr4 (109-170)||(50156043-50156104)
chr4 (99-182)||(55473133-55473213)
[»] chr8 (19 HSPs)
chr8 (21-223)||(32890893-32891100)
chr8 (7-187)||(9935269-9935455)
chr8 (21-187)||(32897017-32897189)
chr8 (65-187)||(14799399-14799524)
chr8 (36-187)||(5542143-5542300)
chr8 (7-187)||(14417931-14418114)
chr8 (57-188)||(7771275-7771409)
chr8 (65-223)||(42992952-42993112)
chr8 (21-187)||(36818976-36819147)
chr8 (1-188)||(1882733-1882930)
chr8 (1-180)||(22219706-22219893)
chr8 (65-205)||(39735514-39735660)
chr8 (65-188)||(10705888-10706021)
chr8 (96-188)||(39727299-39727394)
chr8 (93-188)||(24250185-24250279)
chr8 (102-182)||(1171414-1171493)
chr8 (131-187)||(39689782-39689838)
chr8 (29-109)||(10700042-10700127)
chr8 (111-187)||(42033856-42033930)
[»] chr5 (23 HSPs)
chr5 (21-223)||(28531430-28531637)
chr5 (21-223)||(12692229-12692436)
chr5 (1-223)||(32096908-32097135)
chr5 (21-187)||(28525369-28525541)
chr5 (21-187)||(7389531-7389702)
chr5 (57-225)||(24054378-24054550)
chr5 (21-187)||(12686162-12686334)
chr5 (21-188)||(30384358-30384532)
chr5 (36-187)||(41297296-41297453)
chr5 (57-187)||(16215157-16215290)
chr5 (20-223)||(19066055-19066265)
chr5 (1-187)||(32094142-32094334)
chr5 (57-188)||(19059746-19059880)
chr5 (57-165)||(14610192-14610303)
chr5 (1-188)||(30772267-30772461)
chr5 (65-180)||(26316782-26316900)
chr5 (2-168)||(26509837-26510004)
chr5 (52-182)||(37896286-37896419)
chr5 (127-181)||(8706454-8706508)
chr5 (2-97)||(20500123-20500221)
chr5 (57-109)||(28542281-28542336)
chr5 (1-58)||(33753372-33753428)
chr5 (1-58)||(33849006-33849062)
[»] chr3 (24 HSPs)
chr3 (21-223)||(10244282-10244489)
chr3 (21-223)||(49151616-49151823)
chr3 (5-218)||(11846016-11846234)
chr3 (21-223)||(42197110-42197317)
chr3 (21-223)||(10766819-10767026)
chr3 (21-187)||(11839708-11839880)
chr3 (21-187)||(49157683-49157855)
chr3 (7-187)||(30051085-30051271)
chr3 (21-223)||(38455500-38455705)
chr3 (21-187)||(10238195-10238367)
chr3 (21-187)||(10760633-10760805)
chr3 (7-187)||(17055775-17055962)
chr3 (7-184)||(55003398-55003581)
chr3 (21-188)||(42191202-42191375)
chr3 (57-181)||(53069043-53069170)
chr3 (21-187)||(8331791-8331963)
chr3 (65-187)||(48128030-48128155)
chr3 (65-188)||(28964919-28965043)
chr3 (36-187)||(38449048-38449203)
chr3 (36-187)||(13445080-13445227)
chr3 (36-188)||(17593263-17593422)
chr3 (36-123)||(34300516-34300609)
chr3 (96-188)||(24643533-24643626)
chr3 (1-177)||(46656668-46656850)
[»] chr1 (14 HSPs)
chr1 (5-223)||(25387452-25387675)
chr1 (36-183)||(34740005-34740158)
chr1 (1-187)||(44409996-44410186)
chr1 (65-187)||(50306240-50306365)
chr1 (5-188)||(1078212-1078401)
chr1 (5-187)||(25381518-25381706)
chr1 (36-188)||(24963684-24963842)
chr1 (65-188)||(24926737-24926862)
chr1 (65-188)||(31058095-31058221)
chr1 (1-223)||(38151923-38152144)
chr1 (65-223)||(31051595-31051760)
chr1 (69-187)||(27955216-27955336)
chr1 (65-187)||(12183562-12183692)
chr1 (5-154)||(8092862-8093017)
[»] chr2 (16 HSPs)
chr2 (21-223)||(35090598-35090804)
chr2 (21-223)||(13456104-13456311)
chr2 (7-187)||(36750405-36750591)
chr2 (21-187)||(28682928-28683100)
chr2 (36-223)||(31002396-31002589)
chr2 (21-181)||(35084665-35084831)
chr2 (21-187)||(13462045-13462217)
chr2 (66-187)||(35438693-35438816)
chr2 (65-182)||(13149674-13149794)
chr2 (36-187)||(31008374-31008532)
chr2 (21-188)||(44716786-44716960)
chr2 (65-187)||(30965379-30965505)
chr2 (69-187)||(11048536-11048657)
chr2 (57-187)||(23343604-23343737)
chr2 (1-223)||(29833195-29833419)
chr2 (99-188)||(1388002-1388090)
[»] chr7 (17 HSPs)
chr7 (21-223)||(3817259-3817466)
chr7 (57-223)||(339414-339582)
chr7 (21-188)||(20238955-20239128)
chr7 (21-187)||(3811152-3811324)
chr7 (21-189)||(42767275-42767450)
chr7 (21-188)||(351790-351963)
chr7 (21-187)||(28420942-28421114)
chr7 (65-188)||(12804051-12804177)
chr7 (57-187)||(35147986-35148120)
chr7 (1-187)||(5849509-5849702)
chr7 (1-170)||(43539969-43540144)
chr7 (21-187)||(5979156-5979329)
chr7 (65-189)||(22741899-22742033)
chr7 (1-157)||(26383610-26383772)
chr7 (21-147)||(30219269-30219401)
chr7 (2-58)||(3678016-3678071)
chr7 (66-117)||(18666549-18666602)
[»] chr6 (19 HSPs)
chr6 (57-223)||(8662729-8662897)
chr6 (57-223)||(21196969-21197137)
chr6 (21-188)||(8650785-8650958)
chr6 (36-187)||(32035269-32035426)
chr6 (21-188)||(21782735-21782908)
chr6 (21-187)||(4580304-4580476)
chr6 (2-187)||(31756196-31756389)
chr6 (21-187)||(21190849-21191021)
chr6 (65-188)||(18778634-18778761)
chr6 (1-182)||(17581619-17581797)
chr6 (36-223)||(25343644-25343840)
chr6 (21-187)||(25354216-25354388)
chr6 (36-221)||(6098000-6098191)
chr6 (1-181)||(21770546-21770731)
chr6 (57-142)||(21783337-21783425)
chr6 (57-142)||(21789560-21789648)
chr6 (57-164)||(34603337-34603446)
chr6 (57-164)||(34724614-34724723)
chr6 (96-186)||(6102708-6102803)
[»] scaffold0012 (1 HSPs)
scaffold0012 (57-223)||(172838-173006)
[»] scaffold0236 (1 HSPs)
scaffold0236 (21-189)||(5539-5713)
[»] scaffold0363 (1 HSPs)
scaffold0363 (7-187)||(605-788)
[»] scaffold0440 (1 HSPs)
scaffold0440 (21-187)||(1176-1349)
[»] scaffold0208 (2 HSPs)
scaffold0208 (21-188)||(12400-12573)
scaffold0208 (21-223)||(6527-6734)
[»] scaffold0085 (1 HSPs)
scaffold0085 (1-183)||(38414-38600)
[»] scaffold1114 (1 HSPs)
scaffold1114 (29-187)||(1100-1261)
[»] scaffold0185 (1 HSPs)
scaffold0185 (65-149)||(5974-6061)


Alignment Details
Target: chr4 (Bit Score: 156; Significance: 5e-83; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 49976575 - 49976798
Alignment:
Q  1 ttgttgagaggactgttatcaaagcttcatcctgatattcctaatactctaattattatcctttataaatcaaacatgtcgtagatccgatcataatg-- 98  Q
    |||||||||||| |||||||||||||||||| || |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||       
T  49976575 ttgttgagaggagtgttatcaaagcttcatc-tggtattcctaatactctaattattatccttgataaatcaaacatgtcgtagatccgatcataatcat 49976673  T
Q  99 -ttcaatgttttgtttgctttcgctatggattcataattgttgaatatgttttatgaaatttgtttttattaaaacctaaatttccaacaacggggtatc 197  Q
     |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| | ||||||    
T  49976674 attcaatgttttgtttgctttcgctatcgattcataattgttgaatatgttttatgaaatttgtttttattaaaatctaaatttctaacaa-gtggtatc 49976772  T
Q  198 aaagcggtcttcatgtttgatttatt 223  Q
    | || |||||||||||||||||||||    
T  49976773 agagtggtcttcatgtttgatttatt 49976798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 57 - 220
Target Start/End: Complemental strand, 26963457 - 26963292
Alignment:
Q  57 tatcctttataaatcaaacatgtcgtagatccgatcata---atgttcaatgttttgtttgctttcgctatggattcataattgttgaatatgttttatg 153  Q
    ||||||| ||||||||||||||||||||||||| |||||   |||||||||||||||||||||| |||||| |||||||||| |||||| ||||||||||    
T  26963457 tatccttgataaatcaaacatgtcgtagatccgttcatacttatgttcaatgttttgtttgcttccgctattgattcataatcgttgaacatgttttatg 26963358  T
Q  154 aaatttgtttttattaaaacctaaatttccaacaacggggtatcaaagcggtcttcatgtttgattt 220  Q
    ||||||||||||||||| ||||||||||||||||| |  |||||| |||||||||||||||||||||    
T  26963357 aaatttgtttttattaagacctaaatttccaacaa-gtagtatcagagcggtcttcatgtttgattt 26963292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 7 - 223
Target Start/End: Original strand, 24287977 - 24288196
Alignment:
Q  7 agaggactgttatcaaagcttcatcctgatattcctaatactctaattattat---cctttataaatcaaacatgtcgtagatccgatcataat---gtt 100  Q
    ||||| ||| ||| |||| || |||| | |||||||||||| |||||| |||    |||| |||||||||||||||||||||| ||||||||||   |||    
T  24287977 agagggctgctatgaaagttttatccaggtattcctaataccctaattcttaataaccttgataaatcaaacatgtcgtagatacgatcataatcatgtt 24288076  T
Q  101 caatgttttgtttgctttcgctatggattcataattgttgaatatgttttatgaaatttgtttttattaaaacctaaatttccaacaacggggtatcaaa 200  Q
    ||||||||||||||||| |||||| ||||||||||||||||| |||||||||||||  | | |||||||| ||||||||||||||||| | ||||||| |    
T  24288077 caatgttttgtttgcttccgctattgattcataattgttgaacatgttttatgaaa--tctatttattaagacctaaatttccaacaa-gtggtatcaga 24288173  T
Q  201 gcggtcttcatgtttgatttatt 223  Q
    |||||||||||||||||||||||    
T  24288174 gcggtcttcatgtttgatttatt 24288196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 36 - 223
Target Start/End: Complemental strand, 10739479 - 10739286
Alignment:
Q  36 tattcctaatactctaattatta---tcctttataaatcaaacatgtcgtagatccgatcataat---gttcaatgttttgtttgctttcgctatggatt 129  Q
    |||||||||||| |||||| |||   ||||| |||||||||||||||||||||||||||||||||   ||||||||||||||||||||  ||||| ||||    
T  10739479 tattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttctgctattgatt 10739380  T
Q  130 cataattgttgaatatgttttatgaaatttgtttttattaaaacctaaatttccaacaacggggtatcaaagc-ggtcttcatgtttgatttatt 223  Q
    ||||||||||||| |||||||||||||| ||||| | |||| | |||||| |||||||| | ||||||| ||| ||||| |||||||| ||||||    
T  10739379 cataattgttgaacatgttttatgaaatctgtttatgttaagagctaaatgtccaacaa-gtggtatcagagcaggtctacatgtttggtttatt 10739286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 36 - 223
Target Start/End: Complemental strand, 10953248 - 10953055
Alignment:
Q  36 tattcctaatactctaattatta---tcctttataaatcaaacatgtcgtagatccgatcataat---gttcaatgttttgtttgctttcgctatggatt 129  Q
    |||||||||||| |||||| |||   ||||| |||||||||||||||||||||||||||||||||   ||||||||||||||||||||  ||||| ||||    
T  10953248 tattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttctgctattgatt 10953149  T
Q  130 cataattgttgaatatgttttatgaaatttgtttttattaaaacctaaatttccaacaacggggtatcaaagc-ggtcttcatgtttgatttatt 223  Q
    ||||||||||||| |||||||||||||| ||||| | |||| | |||||| |||||||| | ||||||| ||| ||||| |||||||| ||||||    
T  10953148 cataattgttgaacatgttttatgaaatctgtttatgttaagagctaaatgtccaacaa-gtggtatcagagcaggtctacatgtttggtttatt 10953055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 36 - 187
Target Start/End: Complemental strand, 10733386 - 10733229
Alignment:
Q  36 tattcctaatactctaattatta---tcctttataaatcaaacatgtcgtagatccgatcataat---gttcaatgttttgtttgctttcgctatggatt 129  Q
    |||||||||||| |||||| |||   ||||| |||||||||||||||||||||||||||||||||   |||||||||||| ||||||| |||||| ||||    
T  10733386 tattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttatttgcttccgctattgatt 10733287  T
Q  130 cataattgttgaatatgttttatgaaatttgtttttattaaaacctaaatttccaaca 187  Q
    ||||||||||||| |||||||||||||| ||||| | |||| | |||||| |||||||    
T  10733286 cataattgttgaacatgttttatgaaatctgtttatgttaagagctaaatgtccaaca 10733229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 36 - 187
Target Start/End: Complemental strand, 10947155 - 10946998
Alignment:
Q  36 tattcctaatactctaattatta---tcctttataaatcaaacatgtcgtagatccgatcataat---gttcaatgttttgtttgctttcgctatggatt 129  Q
    |||||||||||| |||||| |||   ||||| |||||||||||||||||||||||||||||||||   |||||||||||| ||||||| |||||| ||||    
T  10947155 tattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttatttgcttccgctattgatt 10947056  T
Q  130 cataattgttgaatatgttttatgaaatttgtttttattaaaacctaaatttccaaca 187  Q
    ||||||||||||| |||||||||||||| ||||| | |||| | |||||| |||||||    
T  10947055 cataattgttgaacatgttttatgaaatctgtttatgttaagagctaaatgtccaaca 10946998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 5 - 223
Target Start/End: Original strand, 48160948 - 48161167
Alignment:
Q  5 tgagaggactgttatcaaagcttcatcctgatattcctaatactctaattattatc--ctttataaatcaaacatgtcgtagatccgatcata---atgt 99  Q
    ||||||| ||||||  ||||||| || | | |||||||||||| |||||| |||    ||| |||||||||||||||||||||||||||||||   ||||    
T  48160948 tgagagggctgttacaaaagctttattcaggtattcctaataccctaattcttaatatcttgataaatcaaacatgtcgtagatccgatcataattatgt 48161047  T
Q  100 tcaatgttttgtttgctttcgctatggattcataattgttgaatatgttttatgaaatttgtttttattaaaacctaaatttccaacaacggggtatcaa 199  Q
    |||||||||||||||||| |||||| ||||||||   |||||| || ||||||||||| | |||||||||| ||||||||||| ||||| | |||||||     
T  48161048 tcaatgttttgtttgcttccgctattgattcata---gttgaacatattttatgaaatctatttttattaagacctaaatttctaacaa-gtggtatcag 48161143  T
Q  200 agcggtcttcatgtttgatttatt 223  Q
    |||   ||||||||||||||||||    
T  48161144 agccaccttcatgtttgatttatt 48161167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 73 - 187
Target Start/End: Complemental strand, 26956929 - 26956812
Alignment:
Q  73 aacatgtcgtagatccgatcata---atgttcaatgttttgtttgctttcgctatggattcataattgttgaatatgttttatgaaatttgtttttatta 169  Q
    ||||||||||||||||| |||||   |||||||||||||| ||||||| |||||| |||||||||| |||||| |||||||||||||| |||||||||||    
T  26956929 aacatgtcgtagatccgttcatacttatgttcaatgttttatttgcttccgctattgattcataatcgttgaacatgttttatgaaatctgtttttatta 26956830  T
Q  170 aaacctaaatttccaaca 187  Q
    | ||||||||||||||||    
T  26956829 agacctaaatttccaaca 26956812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 65 - 187
Target Start/End: Original strand, 50168644 - 50168769
Alignment:
Q  65 ataaatcaaacatgtcgtagatccgatcataat---gttcaatgttttgtttgctttcgctatggattcataattgttgaatatgttttatgaaatttgt 161  Q
    ||||||||||||||||||| || ||||||||||   |||||||||||||||||||| |||||| |||||||||||||||||  ||||||||| ||| ||     
T  50168644 ataaatcaaacatgtcgtatattcgatcataatcatgttcaatgttttgtttgcttccgctattgattcataattgttgaacgtgttttatgtaatctgg 50168743  T
Q  162 ttttattaaaacctaaatttccaaca 187  Q
    ||||||||| ||||||||||||||||    
T  50168744 ttttattaagacctaaatttccaaca 50168769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 21 - 189
Target Start/End: Complemental strand, 6257360 - 6257186
Alignment:
Q  21 aaagcttcatcctgatattcctaatactctaattatta---tcctttataaatcaaacatgtcgtagatccgatcataat---gttcaatgttttgtttg 114  Q
    ||||||| |||| | |||||||||||  |||||| |||   ||||| ||||||||||||||| |||||||||||||||||   |||||||||||||||||    
T  6257360 aaagctttatccaggtattcctaatatcctaattcttaacatccttgataaatcaaacatgttgtagatccgatcataatcatgttcaatgttttgtttg 6257261  T
Q  115 ctttcgctatggattcataattgttgaatatgttttatgaaatttgtttttattaaaacctaaatttccaacaac 189  Q
    ||| |||| | |||| || ||||||||| |||| ||||||||| | ||| |||||| ||||||||||||||||||    
T  6257260 cttccgctgttgatttatgattgttgaacatgtattatgaaatctatttatattaagacctaaatttccaacaac 6257186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 21 - 187
Target Start/End: Complemental strand, 33458422 - 33458249
Alignment:
Q  21 aaagcttcatcctgatattcctaatactctaattatta---tcctttataaatcaaacatgtcgtagatccgatcata---atgttcaatgttttgtttg 114  Q
    ||||||| |||| | |||||||||||| |||||| |||   ||||| |||||||||||||||||||||||||||||||   ||||||||| |||||||||    
T  33458422 aaagctttatccaggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatattttgtttg 33458323  T
Q  115 ctttcgctatggattcataattgttgaatatgttttatgaaatttgttttt-attaaaacctaaatttccaaca 187  Q
    ||| |||||| |||| |  ||||||||| || | ||||||||| ||||||| ||||| ||||||||||||||||    
T  33458322 cttccgctattgatttacgattgttgaacatatattatgaaatctgtttttaattaagacctaaatttccaaca 33458249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 5 - 187
Target Start/End: Original strand, 48167167 - 48167351
Alignment:
Q  5 tgagaggactgttatcaaagcttcatcctgatattcctaatactctaattattatc--ctttataaatcaaacatgtcgtagatccgatcata---atgt 99  Q
    ||||||| ||||||  ||||||| || | | |||||||||||| |||||| |||    ||| |||||||||||||||||||||||||||||||   ||||    
T  48167167 tgagagggctgttacaaaagctttattcaggtattcctaataccctaattcttaatatcttgataaatcaaacatgtcgtagatccgatcataattatgt 48167266  T
Q  100 tcaatgttttgtttgctttcgctatggattcataattgttgaatatgttttatgaaatttgtttttattaaaacctaaatttccaaca 187  Q
    |||||||||||||||||| |||||| ||||||||   |||||| || ||||||||||| | |||||||||| ||||||||||| ||||    
T  48167267 tcaatgttttgtttgcttccgctattgattcata---gttgaacatattttatgaaatctatttttattaagacctaaatttctaaca 48167351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 96 - 188
Target Start/End: Original strand, 4632872 - 4632964
Alignment:
Q  96 atgttcaatgttttgtttgctttcgctatggattcataattgttgaatatgttttatgaaatttgtttttattaaaacctaaatttccaacaa 188  Q
    |||||||||||||||||||||| |||| | |||| |||||||||||| |||||||||||||| |||||||||||| |||||||||||||||||    
T  4632872 atgttcaatgttttgtttgcttccgctgttgattaataattgttgaacatgttttatgaaatctgtttttattaagacctaaatttccaacaa 4632964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 36 - 154
Target Start/End: Original strand, 3769587 - 3769710
Alignment:
Q  36 tattcctaatactctaattatta---tcctttataaatcaaacatgtcgtagatccgatcata---atgttcaatgttttgtttgctttcgctatggatt 129  Q
    |||||||||||| ||||||||||   ||||| || ||| ||||||||||||||||||||||||   ||||||||||||||||||||||    ||| ||||    
T  3769587 tattcctaatac-ctaattattaatatccttgattaatgaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttaaattattgatt 3769685  T
Q  130 cataattgttgaatatgttttatga 154  Q
    ||||||| ||||| || ||||||||    
T  3769686 cataattattgaacatattttatga 3769710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 21 - 142
Target Start/End: Complemental strand, 33461547 - 33461421
Alignment:
Q  21 aaagcttcatcctgatattcctaatactctaattattatc--ctttataaatcaaacatgtcgtagatccgatcata---atgttcaatgttttgtttgc 115  Q
    ||||||| |||| |||||||||||||| |||||| |||    ||| ||||||||||||||||||| |||||| ||||   ||||||||||||||||||||    
T  33461547 aaagctttatccagatattcctaataccctaattcttaatatcttgataaatcaaacatgtcgtaaatccgaccataatcatgttcaatgttttgtttgc 33461448  T
Q  116 tttcgctatggattcataattgttgaa 142  Q
    || | |||| |||| |  |||||||||    
T  33461447 ttccactattgatttacgattgttgaa 33461421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 97 - 182
Target Start/End: Complemental strand, 34308144 - 34308060
Alignment:
Q  97 tgttcaatgttttgtttgctttcgctatggattcataattgttgaatatgttttatgaaatttgtttttattaaaacctaaatttc 182  Q
    |||||||| |||||| ||||| |||||| ||||||||||| ||||| ||||||||| |||| || ||||||||| || ||||||||    
T  34308144 tgttcaatattttgtatgcttccgctattgattcataattattgaacatgttttataaaatctg-ttttattaagacgtaaatttc 34308060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 44831787 - 44831658
Alignment:
Q  1 ttgttgagaggactgttatcaaagcttcatcctgatattcctaatactctaattatta---tcctttataaatcaaacatgtcgtagatccgatcata-- 95  Q
    |||||||||||  ||||||||||||||||||  | ||||| |||||| ||| || |||   ||||| |||||| ||||||||||||||| ||||||||      
T  44831787 ttgttgagagggttgttatcaaagcttcatctaggtattcttaataccctagttcttaatatccttgataaattaaacatgtcgtagattcgatcatatt 44831688  T
Q  96 -atgttcaatgttttgtttgctttcgctat 124  Q
     |||||||||| ||  ||||||| ||||||    
T  44831687 catgttcaatgattaatttgcttccgctat 44831658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 68 - 157
Target Start/End: Complemental strand, 19686433 - 19686341
Alignment:
Q  68 aatcaaacatgtcgtagatccgatcataat---gttcaatgttttgtttgctttcgctatggattcataattgttgaatatgttttatgaaat 157  Q
    |||||| ||||| ||||||||||| |||||   ||||||| |||||||||||| || ||| |||| ||| || ||||| ||||||||||||||    
T  19686433 aatcaagcatgttgtagatccgatgataattacgttcaatattttgtttgcttccgttattgatttatagttattgaacatgttttatgaaat 19686341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 97
Target Start/End: Original strand, 4632442 - 4632474
Alignment:
Q  65 ataaatcaaacatgtcgtagatccgatcataat 97  Q
    |||||||||||||||||||||||||||||||||    
T  4632442 ataaatcaaacatgtcgtagatccgatcataat 4632474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 109 - 170
Target Start/End: Original strand, 50156043 - 50156104
Alignment:
Q  109 tgtttgctttcgctatggattcataattgttgaatatgttttatgaaatttgtttttattaa 170  Q
    ||||| ||| |||||| ||||||||||||||||| |||||||||  ||| || |||||||||    
T  50156043 tgtttacttccgctattgattcataattgttgaacatgttttatataatctggttttattaa 50156104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 99 - 182
Target Start/End: Complemental strand, 55473213 - 55473133
Alignment:
Q  99 ttcaatgttttgtttgctttcgctatggattcataattgttgaatatgttttatgaaatttgtttttattaaaacctaaatttc 182  Q
    |||||| |||| ||||||| |||||| |||| || ||||   || || ||||||||||||||||| |||||| |||||||||||    
T  55473213 ttcaatattttatttgcttccgctattgatttattattg---aacatattttatgaaatttgtttctattaagacctaaatttc 55473133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 109; Significance: 6e-55; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 21 - 223
Target Start/End: Original strand, 32890893 - 32891100
Alignment:
Q  21 aaagcttcatcctgatattcctaatactctaattatta---tcctttataaatcaaacatgtcgtagatccgatcataat---gttcaatgttttgtttg 114  Q
    ||||||| |||| | |||||||||||| |||||| |||   |||||  ||||||||||||||||||||||||||||||||   |||||||||||||||||    
T  32890893 aaagctttatccaggtattcctaataccctaattcttaatatccttggtaaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttg 32890992  T
Q  115 ctttcgctatggattcataattgttgaatatgttttatgaaatttgtttttattaaaacctaaatttccaacaacggggtatcaaagcggtcttcatgtt 214  Q
    ||| |||||| ||||||||||||||||| |||| ||||||||| ||||| |||||| ||||||||||||||||| | ||||||| |||||||||||||||    
T  32890993 cttccgctattgattcataattgttgaacatgtattatgaaatctgtttatattaagacctaaatttccaacaa-gtggtatcagagcggtcttcatgtt 32891091  T
Q  215 tgatttatt 223  Q
    |||||||||    
T  32891092 tgatttatt 32891100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 7 - 187
Target Start/End: Original strand, 9935269 - 9935455
Alignment:
Q  7 agaggactgttatcaaagcttcatcctgatattcctaatactctaattatta---tcctttataaatcaaacatgtcgtagatccgatcataatg---tt 100  Q
    ||||| ||| ||| |||| || |||| | |||||||||||| |||||| |||   ||||| |||||||||||||||||||||||||||||||||    ||    
T  9935269 agagggctgctatgaaagatttatccaggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatatt 9935368  T
Q  101 caatgttttgtttgctttcgctatggattcataattgttgaatatgttttatgaaatttgtttttattaaaacctaaatttccaaca 187  Q
    ||||||||||||||||| |||||| ||||||||||||||||| |||||||||||||| |||||||||||| ||||||||||||||||    
T  9935369 caatgttttgtttgcttccgctattgattcataattgttgaacatgttttatgaaatctgtttttattaagacctaaatttccaaca 9935455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 21 - 187
Target Start/End: Original strand, 32897017 - 32897189
Alignment:
Q  21 aaagcttcatcctgatattcctaatactctaattatta---tcctttataaatcaaacatgtcgtagatccgatcataat---gttcaatgttttgtttg 114  Q
    ||||||| |||| | |||||||||||| |||||| |||   |||||  ||||||||||||||||||||||||||||||||   |||||||||||||||||    
T  32897017 aaagctttatccaggtattcctaataccctaattcttaatatccttggtaaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttg 32897116  T
Q  115 ctttcgctatggattcataattgttgaatatgttttatgaaatttgtttttattaaaacctaaatttccaaca 187  Q
    ||| |||||| ||||||||||||||||| |||| ||||||||| ||||| |||||| ||||||||||||||||    
T  32897117 cttccgctattgattcataattgttgaacatgtattatgaaatctgtttatattaagacctaaatttccaaca 32897189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 65 - 187
Target Start/End: Complemental strand, 14799524 - 14799399
Alignment:
Q  65 ataaatcaaacatgtcgtagatccgatcataat---gttcaatgttttgtttgctttcgctatggattcataattgttgaatatgttttatgaaatttgt 161  Q
    |||||||||||||||||||||||||||||||||   |||||||||||||||||||| |||||| ||||||||||||||||| |||| |||||||||||||    
T  14799524 ataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctattgattcataattgttgaacatgtattatgaaatttgt 14799425  T
Q  162 ttttattaaaacctaaatttccaaca 187  Q
    || |||||| ||||||||||||||||    
T  14799424 ttatattaagacctaaatttccaaca 14799399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 36 - 187
Target Start/End: Complemental strand, 5542300 - 5542143
Alignment:
Q  36 tattcctaatactctaattatta---tcctttataaatcaaacatgtcgtagatccgatcataat---gttcaatgttttgtttgctttcgctatggatt 129  Q
    |||||||||||| |||||| |||   ||||| |||||||||||||||||||||||||||||||||   |||||||||||||||||||| |||||| ||||    
T  5542300 tattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctattgatt 5542201  T
Q  130 cataattgttgaatatgttttatgaaatttgtttttattaaaacctaaatttccaaca 187  Q
    ||||||||||||| |||| |||| |||| | ||| |||||||||||||||||||||||    
T  5542200 cataattgttgaacatgtattataaaatctatttatattaaaacctaaatttccaaca 5542143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 7 - 187
Target Start/End: Original strand, 14417931 - 14418114
Alignment:
Q  7 agaggactgttatcaaagcttcatcctgatattcctaatactctaattatta---tcctttataaatcaaacatgtcgtagatccgatcata---atgtt 100  Q
    ||||| ||| ||| ||||||| |||| | |||||||||||| |||||| |||   ||||| |||||||||||||||||||||||||||||||   |||||    
T  14417931 agagggctgctatgaaagctttatccaggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgtt 14418030  T
Q  101 caatgttttgtttgctttcgctatggattcataattgttgaatatgttttatgaaatttgtttttattaaaacctaaatttccaaca 187  Q
    ||||||||||||||||| |||||| ||||||||   ||| || |||||||||||||| |||||||||||| ||||||||||||||||    
T  14418031 caatgttttgtttgcttccgctattgattcata---gttaaacatgttttatgaaatctgtttttattaagacctaaatttccaaca 14418114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 57 - 188
Target Start/End: Original strand, 7771275 - 7771409
Alignment:
Q  57 tatcctttataaatcaaacatgtcgtagatccgatcataat---gttcaatgttttgtttgctttcgctatggattcataattgttgaatatgttttatg 153  Q
    |||||||  ||||||||||||||||||||||||||||||||   |||||||||||||||||||| |||||| |||| |||||||||||| |||| |||||    
T  7771275 tatccttggtaaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctattgatttataattgttgaacatgtattatg 7771374  T
Q  154 aaatttgtttttattaaaacctaaatttccaacaa 188  Q
    |||| ||||| |||||| |||||||||||||||||    
T  7771375 aaatctgtttatattaagacctaaatttccaacaa 7771409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 65 - 223
Target Start/End: Complemental strand, 42993112 - 42992952
Alignment:
Q  65 ataaatcaaacatgtcgtagatccgatcataat---gttcaatgttttgtttgctttcgctatggattcataattgttgaatatgttttatgaaatttgt 161  Q
    |||||||||||||||||||||||||||||||||   |||||||||||||||||||| |||||| ||||||||||||||||| |||| ||||||||| |||    
T  42993112 ataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctattgattcataattgttgaacatgtattatgaaatctgt 42993013  T
Q  162 tttt-attaaaacctaaatttccaacaacggggtatcaaagcggtcttcatgtttgatttatt 223  Q
    |||| ||||| ||||||||||||| ||| | ||||||| |||   ||||||||||||||||||    
T  42993012 ttttaattaagacctaaatttccatcaa-gtggtatcagagc-cacttcatgtttgatttatt 42992952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 21 - 187
Target Start/End: Original strand, 36818976 - 36819147
Alignment:
Q  21 aaagcttcatcctgatattcctaatactctaattattatc--ctttataaatcaaacatgtcgtagatccgatcataatg---ttcaatgttttgtttgc 115  Q
    ||||||| |||| | |||||||||||| |||||| |||    ||| |||||||||||||||||||||||||||||||||    |||||||||||||||||    
T  36818976 aaagctttatccaggtattcctaataccctaattcttaatatcttgataaatcaaacatgtcgtagatccgatcataatcatattcaatgttttgtttgc 36819075  T
Q  116 tttcgctatggattcataattgttgaatatgttttatgaaatttgtttttattaaaacctaaatttccaaca 187  Q
    || | |||| ||||||||||||||||| |||| |||||| |||||||| |||||| ||||||||||||||||    
T  36819076 ttccactattgattcataattgttgaacatgtattatgagatttgtttatattaagacctaaatttccaaca 36819147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 1882930 - 1882733
Alignment:
Q  1 ttgttgagaggactgttatcaaagcttcatc--ctgatattcctaatactctaattatta---tcctttataaatcaaacatgtcgt-agatccgatcat 94  Q
    ||||||||||| |||  || |||||||||||  | | |||||||||||| |||||| |||   ||||| |||||||||||||||| | ||||||| ||||    
T  1882930 ttgttgagagggctgccatgaaagcttcatctccaggtattcctaataccctaattcttaacatccttgataaatcaaacatgtcattagatccgttcat 1882831  T
Q  95 a---atgttcaatgttttgtttgctttcgctatggattcataattgttgaatatgttttatgaaatttgtttt-tattaaaacctaaatttccaacaa 188  Q
    |   |||||||||||||||||||||| |||||| ||||| ||||||||||| ||||| |||||||| |||||| |||||| |||||||||||||||||    
T  1882830 attcatgttcaatgttttgtttgcttccgctattgattcttaattgttgaacatgttctatgaaatctgttttatattaagacctaaatttccaacaa 1882733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 22219893 - 22219706
Alignment:
Q  1 ttgttgagaggactgttatcaaagcttca-tcctgatattcctaatactctaattatta---tcctttataaatcaaacatgtcgtagatccgatcataa 96  Q
    ||||||||||| |||  |||||||||||| ||| | |||||||||||| |||||| |||   ||||| ||||||||||||||||||||||||||||||||    
T  22219893 ttgttgagagggctgccatcaaagcttcaatccaggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataa 22219794  T
Q  97 t---gttcaatgttttgtttgctttc-gctatggattcataattgttgaatatgttttatgaaatttgtttttattaaaacctaaatt 180  Q
    |   |||||| ||||| |||   ||| ||||| ||||||||| | ||||| |||||||||||||| | |||||||||| |||||||||    
T  22219793 tcatgttcaaagttttctttttcttctgctattgattcataactattgaacatgttttatgaaatctctttttattaagacctaaatt 22219706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 65 - 205
Target Start/End: Complemental strand, 39735660 - 39735514
Alignment:
Q  65 ataaatcaaacatgtcgtagatccgatcataat---gttcaatgttttgtttgctttcgctatggattcataattgttgaatatgttttatgaaatttgt 161  Q
    |||||||||||||||||||||| | ||||||||   ||||||| |||| ||| ||| |||||| ||||||||||||||||| |||||||||||||| | |    
T  39735660 ataaatcaaacatgtcgtagatacaatcataatcatgttcaatattttatttacttccgctattgattcataattgttgaacatgttttatgaaatctat 39735561  T
Q  162 ttttatt----aaaacctaaatttccaacaacggggtatcaaagcggt 205  Q
    |||||||    |||||||||||||||||||| | ||||||| ||||||    
T  39735560 ttttattattaaaaacctaaatttccaacaa-gtggtatcagagcggt 39735514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 65 - 188
Target Start/End: Original strand, 10705888 - 10706021
Alignment:
Q  65 ataaatcaaacatgtcgtagatccgatcataat---------gttcaatgttttgtttgctttcgctatggattcataattgttgaatatgttttatgaa 155  Q
    |||||||||||||||||||||||||||||||||         |||||||||||||||||||| |||||| |||| |  |||||| || |||| |||||||    
T  10705888 ataaatcaaacatgtcgtagatccgatcataatcataatcatgttcaatgttttgtttgcttacgctattgatttacgattgttaaacatgtattatgaa 10705987  T
Q  156 atttgttttt-attaaaacctaaatttccaacaa 188  Q
    || ||||||| ||||| |||||||||||||||||    
T  10705988 atctgtttttaattaagacctaaatttccaacaa 10706021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 96 - 188
Target Start/End: Complemental strand, 39727394 - 39727299
Alignment:
Q  96 atgttcaatgttttgtttgctttcgctatggattcataattgttgaatatgttttatgaaat---ttgtttttattaaaacctaaatttccaacaa 188  Q
    |||||||||||||||||||||| || ||| ||||||||||||||||| ||||||||||||||   || || ||||||| |||||||||||||||||    
T  39727394 atgttcaatgttttgtttgcttccgttattgattcataattgttgaacatgttttatgaaatctatttttattattaagacctaaatttccaacaa 39727299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 93 - 188
Target Start/End: Original strand, 24250185 - 24250279
Alignment:
Q  93 ataatgttcaatgttttgtttgctttcgctatggattcataattgttgaatatgttttatgaaatttgtttttattaaaacctaaatttccaacaa 188  Q
    |||||||||||| ||||||||| || |||||| |||||||| ||||| || |||||||||||||| ||||||| |||| |||||||||| ||||||    
T  24250185 ataatgttcaatattttgtttgtttccgctattgattcatatttgttcaacatgttttatgaaatatgttttt-ttaagacctaaattttcaacaa 24250279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 102 - 182
Target Start/End: Original strand, 1171414 - 1171493
Alignment:
Q  102 aatgttttgtttgctttcgctatggattcataattgttgaatatgttttatgaaatttgtttttattaaaacctaaatttc 182  Q
    |||||||||||||||| |||  | || ||||||||||||||||||||| ||||||| || ||||||||| |||||||||||    
T  1171414 aatgttttgtttgcttccgcggttgaatcataattgttgaatatgtttcatgaaatctg-ttttattaagacctaaatttc 1171493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 131 - 187
Target Start/End: Original strand, 39689782 - 39689838
Alignment:
Q  131 ataattgttgaatatgttttatgaaatttgtttttattaaaacctaaatttccaaca 187  Q
    |||||||||||| |||||||||||||| ||||||||||||||||||| | |||||||    
T  39689782 ataattgttgaacatgttttatgaaatctgtttttattaaaacctaagtctccaaca 39689838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 29 - 109
Target Start/End: Original strand, 10700042 - 10700127
Alignment:
Q  29 atcctgatattcctaatactctaattattatc--ctttataaatcaaacatgtcgtagatccgatcata---atgttcaatgtttt 109  Q
    |||| |||||||||||||| |||||| |||    ||| |||||||||||||||||||||||||||||||   ||||||||||||||    
T  10700042 atccagatattcctaataccctaattcttaatatcttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgtttt 10700127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 111 - 187
Target Start/End: Original strand, 42033856 - 42033930
Alignment:
Q  111 tttgctttcgctatggattcataattgttgaatatgttttatgaaatttgtttttattaaaacctaaatttccaaca 187  Q
    |||||||  ||||| |||||||  |||||||||  |||||||||||| | |||||| ||| ||||||||||||||||    
T  42033856 tttgcttctgctattgattcattgttgttgaat--gttttatgaaatctatttttagtaagacctaaatttccaaca 42033930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 109; Significance: 6e-55; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 21 - 223
Target Start/End: Complemental strand, 28531637 - 28531430
Alignment:
Q  21 aaagcttcatcctgatattcctaatactctaattatta---tcctttataaatcaaacatgtcgtagatccgatcataat---gttcaatgttttgtttg 114  Q
    ||||||| |||| | ||||| |||||| |||||| |||   ||||| |||||||||||||||||||||||||||||||||   |||||||||||||||||    
T  28531637 aaagctttatccaggtattcataataccctaattcttaatatccttaataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttg 28531538  T
Q  115 ctttcgctatggattcataattgttgaatatgttttatgaaatttgtttttattaaaacctaaatttccaacaacggggtatcaaagcggtcttcatgtt 214  Q
    ||| |||||| ||||||||||||||||| |||| ||||||||| ||||| |||||| ||||||||||||||||| | ||||||| |||||||||||||||    
T  28531537 cttccgctattgattcataattgttgaacatgtattatgaaatctgtttatattaagacctaaatttccaacaa-gtggtatcagagcggtcttcatgtt 28531439  T
Q  215 tgatttatt 223  Q
    |||||||||    
T  28531438 tgatttatt 28531430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 21 - 223
Target Start/End: Complemental strand, 12692436 - 12692229
Alignment:
Q  21 aaagcttcatcctgatattcctaatactctaattatta---tcctttataaatcaaacatgtcgtagatccgatcataat---gttcaatgttttgtttg 114  Q
    ||||||| |||| | |||||||||||  |||||| |||   ||||| |||||||||||||||||||||||||||||||||   |||||||||||||||||    
T  12692436 aaagctttatccaggtattcctaatagcctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttg 12692337  T
Q  115 ctttcgctatggattcataattgttgaatatgttttatgaaatttgtttttattaaaacctaaatttccaacaacggggtatcaaagcggtcttcatgtt 214  Q
    ||| |||||| |||| |||||||||||| |||||||||||||| ||||| ||| || | ||||||||||||||| | ||||||| ||| |||||||||||    
T  12692336 cttccgctattgatttataattgttgaacatgttttatgaaatctgtttatatcaagagctaaatttccaacaa-gtggtatcagagccgtcttcatgtt 12692238  T
Q  215 tgatttatt 223  Q
    |||||||||    
T  12692237 tgatttatt 12692229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 32097135 - 32096908
Alignment:
Q  1 ttgttgagaggactgttatcaaagcttcatcctgatattcctaatactctaattatta---tcctttataaatcaaacatgtcgtagatccgatcataat 97  Q
    ||||||||||||||| ||| ||||||| || | | || ||||||||| |||||| |||   ||||| |||||||||||||||||||||||| ||||||||    
T  32097135 ttgttgagaggactgctatgaaagctttattcaggtaatcctaatac-ctaattcttaatatccttgataaatcaaacatgtcgtagatcctatcataat 32097037  T
Q  98 ---gttcaatgttttgtttgctttcgctatggattcataattgttgaatatgttttatgaaatttgttttt-attaaaacctaaatttccaacaacgggg 193  Q
       |||||||||||||||||||| |||||| |||| |  ||||||||| |||| ||||||||| ||||||| ||||| |||||||||||||||||   ||    
T  32097036 catgttcaatgttttgtttgcttccgctattgatttacgattgttgaacatgtattatgaaatctgtttttaattaagacctaaatttccaacaa-atgg 32096938  T
Q  194 tatcaaagcggtcttcatgtttgatttatt 223  Q
    ||||| ||||||||||||||||||||||||    
T  32096937 tatcagagcggtcttcatgtttgatttatt 32096908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 21 - 187
Target Start/End: Complemental strand, 28525541 - 28525369
Alignment:
Q  21 aaagcttcatcctgatattcctaatactctaattatta---tcctttataaatcaaacatgtcgtagatccgatcataat---gttcaatgttttgtttg 114  Q
    ||||||| |||| | ||||| |||||| |||||| |||   ||||| |||||||||||||||||||||||||||||||||   |||||||||||||||||    
T  28525541 aaagctttatccaggtattcataataccctaattcttaatatccttaataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttg 28525442  T
Q  115 ctttcgctatggattcataattgttgaatatgttttatgaaatttgtttttattaaaacctaaatttccaaca 187  Q
    ||| |||||| ||||||||||||||||| |||| ||||||||| ||||| |||||| ||||||||||||||||    
T  28525441 cttccgctattgattcataattgttgaacatgtattatgaaatctgtttatattaagacctaaatttccaaca 28525369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 21 - 187
Target Start/End: Complemental strand, 7389702 - 7389531
Alignment:
Q  21 aaagcttcatcctgatattcctaatactctaattattatc--ctttataaatcaaacatgtcgtagatccgatcataat---gttcaatgttttgtttgc 115  Q
    ||||||| |||| | |||||||||||| |||||| |||    ||| |||||||||||||||||| ||||||||||||||   ||||||||||||||||||    
T  7389702 aaagctttatccaggtattcctaataccctaattcttaatatcttgataaatcaaacatgtcgtggatccgatcataatcatgttcaatgttttgtttgc 7389603  T
Q  116 tttcgctatggattcataattgttgaatatgttttatgaaatttgtttttattaaaacctaaatttccaaca 187  Q
    || |||||| ||||||||||||||||| |||| ||||||||||||||| |||||| ||||||||||||||||    
T  7389602 ttccgctattgattcataattgttgaacatgtattatgaaatttgtttatattaagacctaaatttccaaca 7389531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 57 - 225
Target Start/End: Original strand, 24054378 - 24054550
Alignment:
Q  57 tatcctttataaatcaaacatgtcgtagatccgatcataat---gttcaatgttttgtttgctttcgctatggattcataattgttgaatatgttttatg 153  Q
    ||||||| |||||||||||||||||||||||||||||||||   |||||||||||||||||||| |||||| |||| |||||||||||| ||||||||||    
T  24054378 tatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctatagatttataattgttgaacatgttttatg 24054477  T
Q  154 aaatttgtttttattaaaacct-aaatttccaacaacggggtatcaaagc-ggtcttcatgtttgatttatttg 225  Q
    |||| |||||||||||| |||| |||||| |||||| | ||||||| ||| ||||||  |||||||||| ||||    
T  24054478 aaatctgtttttattaagacctaaaattttcaacaa-gtggtatcagagcgggtctttttgtttgatttgtttg 24054550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 21 - 187
Target Start/End: Complemental strand, 12686334 - 12686162
Alignment:
Q  21 aaagcttcatcctgatattcctaatactctaattatta---tcctttataaatcaaacatgtcgtagatccgatcataat---gttcaatgttttgtttg 114  Q
    ||||||| |||| | |||||||||||  |||||| |||   ||||| |||||||||||||||||||||||||||||||||   |||||||||||||||||    
T  12686334 aaagctttatccaggtattcctaatagcctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttg 12686235  T
Q  115 ctttcgctatggattcataattgttgaatatgttttatgaaatttgtttttattaaaacctaaatttccaaca 187  Q
    ||| |||||| |||| |||||||||||| |||||||||||||| ||||| ||| || | ||||||||||||||    
T  12686234 cttccgctattgatttataattgttgaacatgttttatgaaatctgtttatatcaagagctaaatttccaaca 12686162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 21 - 188
Target Start/End: Complemental strand, 30384532 - 30384358
Alignment:
Q  21 aaagcttcatcctgatattcctaatactctaattatta---tcctttataaatcaaacatgtcgtagatccgatcataat---gttcaatgttttgtttg 114  Q
    |||||||||||| | ||||| |||||| || ||| |||   ||||| |||||||| ||||||| ||||||||||||||||   |||||||||||||||||    
T  30384532 aaagcttcatccaggtattcttaatacccttattcttaatatccttgataaatcagacatgtc-tagatccgatcataatcgtgttcaatgttttgtttg 30384434  T
Q  115 ctttcgctatggattcataattgttgaatatgttttatgaaatttg--tttttattaaaacctaaatttccaacaa 188  Q
    ||| |||||| ||||||||||||||||| |||||||||||||| ||  ||||||||||||||||||||||||||||    
T  30384433 cttccgctattgattcataattgttgaacatgttttatgaaatctgtttttttattaaaacctaaatttccaacaa 30384358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 36 - 187
Target Start/End: Original strand, 41297296 - 41297453
Alignment:
Q  36 tattcctaatactctaattatt---atcctttataaatcaaacatgtcgtagatccgatcataat---gttcaatgttttgtttgctttcgctatggatt 129  Q
    |||||||||||| |||||| ||   |||||| |||||||||||||||||||||||||||||||||   ||||||||||||||||||||  ||||| ||||    
T  41297296 tattcctaataccctaattctttatatccttgataaatcaaacatgtcgtagatccgatcataattatgttcaatgttttgtttgcttctgctattgatt 41297395  T
Q  130 cataattgttgaatatgttttatgaaatttgtttttattaaaacctaaatttccaaca 187  Q
    ||||||||||||| |||| ||||||||| | ||| |||||| ||| ||||||||||||    
T  41297396 cataattgttgaacatgtattatgaaatctctttatattaagacccaaatttccaaca 41297453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 57 - 187
Target Start/End: Complemental strand, 16215290 - 16215157
Alignment:
Q  57 tatcctttataaatcaaacatgtcgtagatccgatcataat---gttcaatgttttgtttgctttcgctatggattcataattgttgaatatgttttatg 153  Q
    ||||||| ||||||||||||| |||||||||| ||||||||   ||| |||||||||||||||| |||||| |||||||||||||||||||||| |||||    
T  16215290 tatccttgataaatcaaacatttcgtagatccaatcataatcatgttaaatgttttgtttgcttccgctattgattcataattgttgaatatgtgttatg 16215191  T
Q  154 aaatttgtttttattaaaacctaaatttccaaca 187  Q
    |||| ||||||||| || ||||||||||| ||||    
T  16215190 aaatctgtttttataaagacctaaatttctaaca 16215157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 20 - 223
Target Start/End: Complemental strand, 19066265 - 19066055
Alignment:
Q  20 caaagcttcatc--ctgatattcctaatactctaattatta---tcctttataaatcaaacatgtcgtagatccgatcata---atgttcaatgttttgt 111  Q
    ||||||||||||  ||| ||||||||||||  ||||| |||   ||||| ||||||||||||||||||||||||| |||||   ||| | ||||||||||    
T  19066265 caaagcttcatctcctggtattcctaataccataattcttaatatccttgataaatcaaacatgtcgtagatccgttcatattcatgcttaatgttttgt 19066166  T
Q  112 ttgctttcgctatggattcataattgttgaatatgttttatgaaatttgtttttattaaaacctaaatttccaacaacggggtatcaaagcggtcttcat 211  Q
    |||||| |||||  |||| ||||| |||||| ||| |||||||||| |||||||||||| || |||||||||||| | | ||||||| ||||||||||      
T  19066165 ttgcttccgctaatgatttataatcgttgaacatggtttatgaaatatgtttttattaagacttaaatttccaacta-gtggtatcagagcggtcttcgc 19066067  T
Q  212 gtttgatttatt 223  Q
    ||||||||||||    
T  19066066 gtttgatttatt 19066055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 32094334 - 32094142
Alignment:
Q  1 ttgttgagaggactgttatcaaagcttcatcctgatattcctaatactctaattatta---tcctttataaatcaaacatgtcgtagatccgatcataat 97  Q
    ||||||||||| ||| ||| ||||||| || | | |||||||||||| |||||| |||   ||||| |||||||||||||||||||||||| ||||||||    
T  32094334 ttgttgagagggctgctatgaaagctttattcaggtattcctaatac-ctaattcttaatatccttgataaatcaaacatgtcgtagatcctatcataat 32094236  T
Q  98 ---gttcaatgttttgtttgctttcgctatggattcataattgttgaatatgttttatgaaatttgttttt-attaaaacctaaatttccaaca 187  Q
       |||||||||||||||||||| |||||| |||| |  ||||||||| |||| |||| |||| ||||||| ||||| ||||||||||||||||    
T  32094235 catgttcaatgttttgtttgcttccgctattgatttacgattgttgaacatgtattataaaatctgtttttaattaagacctaaatttccaaca 32094142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 57 - 188
Target Start/End: Complemental strand, 19059880 - 19059746
Alignment:
Q  57 tatcctttataaatcaaacatgtcgtagatccgatcata---atgttcaatgttttgtttgctttcgctatggattcataattgttgaatatgttttatg 153  Q
    ||||||| ||||||||||||||||||||||||| | |||   ||||| ||| |||||||||||| | |||  |||| ||||| |||||||| ||||||||    
T  19059880 tatccttgataaatcaaacatgtcgtagatccgtttatattcatgtttaatattttgtttgcttcccctaatgatttataatcgttgaatacgttttatg 19059781  T
Q  154 aaatttgtttttattaaaacctaaatttccaacaa 188  Q
    |||| |||||||||||| |||||||||||||||||    
T  19059780 aaatatgtttttattaagacctaaatttccaacaa 19059746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 57 - 165
Target Start/End: Original strand, 14610192 - 14610303
Alignment:
Q  57 tatcctttataaatcaaacatgtcgtagatccgatcataat---gttcaatgttttgtttgctttcgctatggattcataattgttgaatatgttttatg 153  Q
    ||||||| ||||||||||||||||||| |||||||||||||   |||||||| ||| ||||||| ||||||  |||||||||||||||| ||||||||||    
T  14610192 tatccttgataaatcaaacatgtcgtaaatccgatcataatcatgttcaatggtttatttgcttccgctattaattcataattgttgaacatgttttatg 14610291  T
Q  154 aaatttgttttt 165  Q
    |||| |||||||    
T  14610292 aaatctgttttt 14610303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 188
Target Start/End: Original strand, 30772267 - 30772461
Alignment:
Q  1 ttgttgagaggactgttatcaaagcttcatcctgatattcctaatactctaattatta---tcctttataaatcaaacatgtcgtagatccgatcataat 97  Q
    ||||||||||| |||  || ||| ||| |||| | || ||||||||| |||||| |||   ||||| ||||||||||||||| || ||||||||||||||    
T  30772267 ttgttgagagggctgccataaaaactttatccaggtaatcctaataccctaattcttaatatccttgataaatcaaacatgttgtcgatccgatcataat 30772366  T
Q  98 ---gttcaatgtttt-gtttgctttcgctatggattcataattgttgaatatgttttatgaaatttgtttttattaaaacctaaatttccaacaa 188  Q
       ||||| |||||| |||||||| | || |  |||||||||| ||||| |||||||||||||||| |||||||||| | |||||||||||||||    
T  30772367 catgttcattgtttttgtttgcttccactgtttattcataattattgaacatgttttatgaaatttatttttattaagaactaaatttccaacaa 30772461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 65 - 180
Target Start/End: Complemental strand, 26316900 - 26316782
Alignment:
Q  65 ataaatcaaacatgtcgtagatccgatcata---atgttcaatgttttgtttgctttcgctatggattcataattgttgaatatgttttatgaaatttgt 161  Q
    |||||||||||||||| ||||||| ||||||   |||||||||||||| ||||||| | ||||  ||| | |||| ||||| |||||||||||||| |||    
T  26316900 ataaatcaaacatgtcctagatccaatcatattaatgttcaatgttttttttgcttccactattaatttaaaattattgaacatgttttatgaaatatgt 26316801  T
Q  162 ttttattaaaacctaaatt 180  Q
    ||||||  | |||||||||    
T  26316800 ttttatgtagacctaaatt 26316782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 2 - 168
Target Start/End: Original strand, 26509837 - 26510004
Alignment:
Q  2 tgttgagaggactgttatcaaagcttcatcctgatattcctaatactctaattattatc--ctttataaatcaaacatgtcgtagatccgatcataat-- 97  Q
    ||||||||||||||| ||||||||||||| |  ||||||||||||| |||||| |||    ||| || ||||||| ||||||||| |   ||||||||      
T  26509837 tgttgagaggactgtcatcaaagcttcattcatatattcctaatac-ctaattcttaatatcttgatgaatcaaatatgtcgtagtttatatcataatta 26509935  T
Q  98 -gttcaatgttttgtttgctttcgctatggattcataattgttgaatatgttttatgaaatttgtttttatt 168  Q
     |||||||||||||||||||| | ||||   ||||||||  ||||| |||||||||||||| ||||||||||    
T  26509936 tgttcaatgttttgtttgcttccactat---ttcataatgattgaacatgttttatgaaatctgtttttatt 26510004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 182
Target Start/End: Complemental strand, 37896419 - 37896286
Alignment:
Q  52 attattatcctttataaatcaaacatgtcgtagatccgatcata---atgttcaatgttttgtttgctttcgctatggattcataattgttgaatatgtt 148  Q
    |||| ||| ||| ||||||||| |||||||||||||||||||||   ||||||||  |||| ||| |||  ||| | ||||||| ||| || |||||| |    
T  37896419 attaatattcttgataaatcaatcatgtcgtagatccgatcataatcatgttcaacattttatttacttctgctgttgattcatgattattaaatatgat 37896320  T
Q  149 ttatgaaatttgtttttattaaaacctaaatttc 182  Q
    |||||||||| |||||  |||| |||||| ||||    
T  37896319 ttatgaaattcgttttatttaagacctaattttc 37896286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 127 - 181
Target Start/End: Complemental strand, 8706508 - 8706454
Alignment:
Q  127 attcataattgttgaatatgttttatgaaatttgtttttattaaaacctaaattt 181  Q
    |||||||||||||||| || ||||||||||| | |||||||||| ||||||||||    
T  8706508 attcataattgttgaacatattttatgaaatctatttttattaagacctaaattt 8706454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 97
Target Start/End: Original strand, 20500123 - 20500221
Alignment:
Q  2 tgttgagaggactgttatcaaagcttcatcctgatattcctaatactctaattatta---tcctttataaatcaaacatgtcgtagatccgatcataat 97  Q
    |||||||||| |||  || |||| || |||| | |||| |||||||||||||| |||   ||||| |||||||||  ||||||||||||||||||||||    
T  20500123 tgttgagagggctgccataaaagttttatccaggtatttctaatactctaattcttagtatccttgataaatcaagtatgtcgtagatccgatcataat 20500221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 109
Target Start/End: Original strand, 28542281 - 28542336
Alignment:
Q  57 tatcctttataaatcaaacatgtcgtagatccgatcata---atgttcaatgtttt 109  Q
    ||||||| |||||||||||||||||||| | ||||||||   ||||||||||||||    
T  28542281 tatccttgataaatcaaacatgtcgtagtttcgatcataatcatgttcaatgtttt 28542336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 33753428 - 33753372
Alignment:
Q  1 ttgttgagaggactgttatcaaagcttcatcctgatattcctaatactctaattatta 58  Q
    |||||||||||||||| |||||| |||||||  | |||||||||||| ||||||||||    
T  33753428 ttgttgagaggactgtcatcaaaacttcatcaaggtattcctaatac-ctaattatta 33753372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 33849062 - 33849006
Alignment:
Q  1 ttgttgagaggactgttatcaaagcttcatcctgatattcctaatactctaattatta 58  Q
    |||||||||||||||| |||||| |||||||  | |||||||||||| ||||||||||    
T  33849062 ttgttgagaggactgtcatcaaaacttcatcaaggtattcctaatac-ctaattatta 33849006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 109; Significance: 6e-55; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 21 - 223
Target Start/End: Complemental strand, 10244489 - 10244282
Alignment:
Q  21 aaagcttcatcctgatattcctaatactctaattatta---tcctttataaatcaaacatgtcgtagatccgatcataat---gttcaatgttttgtttg 114  Q
    ||||||| |||| | |||||||||||  |||||| |||   ||||| |||||||||||||||||||||||||||||||||   |||||||||||||||||    
T  10244489 aaagctttatccaggtattcctaatagcctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttg 10244390  T
Q  115 ctttcgctatggattcataattgttgaatatgttttatgaaatttgtttttattaaaacctaaatttccaacaacggggtatcaaagcggtcttcatgtt 214  Q
    ||| |||||| ||||||||||||||||| |||||||||||||| ||||| |||||| | ||||||||||||||| | ||||||| |||||||||||||||    
T  10244389 cttccgctattgattcataattgttgaacatgttttatgaaatctgtttatattaagagctaaatttccaacaa-gtggtatcagagcggtcttcatgtt 10244291  T
Q  215 tgatttatt 223  Q
    |||||||||    
T  10244290 tgatttatt 10244282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 21 - 223
Target Start/End: Original strand, 49151616 - 49151823
Alignment:
Q  21 aaagcttcatcctgatattcctaatactctaattatta---tcctttataaatcaaacatgtcgtagatccgatcataat---gttcaatgttttgtttg 114  Q
    ||||||| |||| | ||||| |||||| |||||| |||   ||||| |||||||||||||||||||||||||||||||||   |||||||||||||||||    
T  49151616 aaagctttatccaggtattcataataccctaattcttaatatccttaataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttg 49151715  T
Q  115 ctttcgctatggattcataattgttgaatatgttttatgaaatttgtttttattaaaacctaaatttccaacaacggggtatcaaagcggtcttcatgtt 214  Q
    ||| |||||| ||||||||||||||||| |||| ||||||||| ||||| |||||| ||||||||||||||||| | ||||||| |||||||||||||||    
T  49151716 cttccgctattgattcataattgttgaacatgtattatgaaatctgtttatattaagacctaaatttccaacaa-gtggtatcagagcggtcttcatgtt 49151814  T
Q  215 tgatttatt 223  Q
    |||||||||    
T  49151815 tgatttatt 49151823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 5 - 218
Target Start/End: Complemental strand, 11846234 - 11846016
Alignment:
Q  5 tgagaggactgttatcaaagcttcatcctgatattcctaatactctaattatta---tcctttataaatcaaacatgtcgtagatccgatcataat---g 98  Q
    ||||||| ||||||  ||||||| |||| | |||||||||||| |||||| |||   | ||| |||||||||||||||||||||||||||||||||   |    
T  11846234 tgagagggctgttacaaaagctttatccaggtattcctaataccctaattcttaatatacttgataaatcaaacatgtcgtagatccgatcataatcatg 11846135  T
Q  99 ttcaatgttttgtttgctttcgctatggattcataattgttgaatatgttttatgaaatttgtttttattaaaacctaaatttccaacaacggggtatca 198  Q
    ||||||||||||||||||| |||||| |||| |||||||||||| |||| |||| |||| |||||| ||||| ||||||||||||||||| | |||||||    
T  11846134 ttcaatgttttgtttgcttccgctattgatttataattgttgaacatgtattataaaatctgttttaattaagacctaaatttccaacaa-gtggtatca 11846036  T
Q  199 aagcggtcttcatgtttgat 218  Q
     |||||||||||||||||||    
T  11846035 gagcggtcttcatgtttgat 11846016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 21 - 223
Target Start/End: Complemental strand, 42197317 - 42197110
Alignment:
Q  21 aaagcttcatcctgatattcctaatactctaattattat---cctttataaatcaaacatgtcgtagatccgatcataat---gttcaatgttttgtttg 114  Q
    ||||||| |||| | |||||||||||| |||||| |||    |||| |||||||||||||||||||||||||||||||||   |||||||||||||||||    
T  42197317 aaagctttatccaggtattcctaataccctaattcttaatacccttgataaatcaaacatgtcgtagatccgatcataatcaggttcaatgttttgtttg 42197218  T
Q  115 ctttcgctatggattcataattgttgaatatgttttatgaaatttgtttttattaaaacctaaatttccaacaacggggtatcaaagcggtcttcatgtt 214  Q
    ||| |||||| |||||| |||||||||| |||| ||||||||| | ||| |||||| ||||| ||||||||||| | ||||||| |||||||||||||||    
T  42197217 cttccgctattgattcacaattgttgaacatgtattatgaaatctatttatattaagacctatatttccaacaa-gtggtatcagagcggtcttcatgtt 42197119  T
Q  215 tgatttatt 223  Q
    |||||||||    
T  42197118 tgatttatt 42197110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 21 - 223
Target Start/End: Complemental strand, 10767026 - 10766819
Alignment:
Q  21 aaagcttcatcctgatattcctaatactctaattatta---tcctttataaatcaaacatgtcgtagatccgatcataat---gttcaatgttttgtttg 114  Q
    ||||||| |||| | |||||||||||| |||||| |||   ||||| ||||||||||||||||||||||||| |||||||   |||||||||||||||||    
T  10767026 aaagctttatccaggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccggtcataatcatgttcaatgttttgtttg 10766927  T
Q  115 ctttcgctatggattcataattgttgaatatgttttatgaaatttgtttttattaaaacctaaatttccaacaacggggtatcaaagcggtcttcatgtt 214  Q
    ||| |||| | |||| |||||||||||| |||| |||||||||||||||||| ||| ||||||||||||||||| | ||||||| |||   |||||||||    
T  10766926 cttccgctgttgatttataattgttgaacatgtattatgaaatttgtttttaataagacctaaatttccaacaa-gtggtatcagagccaccttcatgtt 10766828  T
Q  215 tgatttatt 223  Q
    |||||||||    
T  10766827 tgatttatt 10766819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 21 - 187
Target Start/End: Complemental strand, 11839880 - 11839708
Alignment:
Q  21 aaagcttcatcctgatattcctaatactctaattatta---tcctttataaatcaaacatgtcgtagatccgatcataat---gttcaatgttttgtttg 114  Q
    ||||||| |||| | |||||||||||| |||||| |||   ||||| |||||||||||||||||||||||||||||||||   |||||||||||||||||    
T  11839880 aaagctttatccaggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttg 11839781  T
Q  115 ctttcgctatggattcataattgttgaatatgttttatgaaatttgtttttattaaaacctaaatttccaaca 187  Q
    ||| |||||| ||||||||||||||||| |||| | ||||||| ||||| |||||| ||||||||||||||||    
T  11839780 cttccgctattgattcataattgttgaacatgtatcatgaaatctgtttatattaagacctaaatttccaaca 11839708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 21 - 187
Target Start/End: Original strand, 49157683 - 49157855
Alignment:
Q  21 aaagcttcatcctgatattcctaatactctaattatta---tcctttataaatcaaacatgtcgtagatccgatcataat---gttcaatgttttgtttg 114  Q
    ||||||| |||| | ||||| |||||| |||||| |||   ||||| |||||||||||||||||||||||||||||||||   |||||||||||||||||    
T  49157683 aaagctttatccaggtattcataataccctaattcttaatatccttaataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttg 49157782  T
Q  115 ctttcgctatggattcataattgttgaatatgttttatgaaatttgtttttattaaaacctaaatttccaaca 187  Q
    ||| |||||| ||||||||||||||||| |||| ||||||||| ||||| |||||| ||||||||||||||||    
T  49157783 cttccgctattgattcataattgttgaacatgtattatgaaatctgtttatattaagacctaaatttccaaca 49157855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 7 - 187
Target Start/End: Complemental strand, 30051271 - 30051085
Alignment:
Q  7 agaggactgttatcaaagcttcatcctgatattcctaatactctaattatta---tcctttataaatcaaacatgtcgtagatccgatcataat---gtt 100  Q
    ||||| |||| || ||||||| |||| | |||||||||||| |||||| |||   ||||| ||||||||||||||||||||||| ||| |||||   |||    
T  30051271 agagggctgtaatgaaagctttatccaggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatctgattataatcatgtt 30051172  T
Q  101 caatgttttgtttgctttcgctatggattcataattgttgaatatgttttatgaaatttgtttttattaaaacctaaatttccaaca 187  Q
    |||| |||||||||||| |||||| ||||||||||||||||| |||||||||||||| |||||||||||| |||||||||| |||||    
T  30051171 caatattttgtttgcttccgctattgattcataattgttgaacatgttttatgaaatctgtttttattaagacctaaattttcaaca 30051085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 21 - 223
Target Start/End: Complemental strand, 38455705 - 38455500
Alignment:
Q  21 aaagcttcatcctgatattcctaatactctaattatta---tcctttataaatcaaacatgtcgtagatccgatcataat---gttcaatgttttgtttg 114  Q
    ||||||| |||| | |||||||||||| |||||| |||   ||||| ||||||||||||||| |||||||||||||||||   |||||||||||||||||    
T  38455705 aaagctttatccaggtattcctaataccctaattcttaatatccttgataaatcaaacatgttgtagatccgatcataatcatgttcaatgttttgtttg 38455606  T
Q  115 ctttcgctatggattcataattgttgaatatgttttatgaaatttgtttttattaaaacctaaatttccaacaacggggtatcaaagcggtcttcatgtt 214  Q
    ||| |||||| |||| |||||||||||| |||| ||||||||  | ||| |||||| ||| |||||||||||||   ||||||| |||||||||||||||    
T  38455605 cttccgctattgatttataattgttgaacatgtattatgaaa--tctttatattaagaccgaaatttccaacaa-atggtatcagagcggtcttcatgtt 38455509  T
Q  215 tgatttatt 223  Q
    |||||||||    
T  38455508 tgatttatt 38455500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 21 - 187
Target Start/End: Complemental strand, 10238367 - 10238195
Alignment:
Q  21 aaagcttcatcctgatattcctaatactctaattatta---tcctttataaatcaaacatgtcgtagatccgatcataat---gttcaatgttttgtttg 114  Q
    ||||||| |||| | |||||||||||  |||||| |||   ||||| ||||||||||||||||||||||| |||||||||   |||||||||||||||||    
T  10238367 aaagctttatccaggtattcctaatagcctaattcttaatatccttgataaatcaaacatgtcgtagatctgatcataatcatgttcaatgttttgtttg 10238268  T
Q  115 ctttcgctatggattcataattgttgaatatgttttatgaaatttgtttttattaaaacctaaatttccaaca 187  Q
    ||| |||||| ||||||||||||||||| |||||||||||||| ||||| |||||| | ||||||||||||||    
T  10238267 cttccgctattgattcataattgttgaacatgttttatgaaatctgtttatattaagagctaaatttccaaca 10238195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 21 - 187
Target Start/End: Complemental strand, 10760805 - 10760633
Alignment:
Q  21 aaagcttcatcctgatattcctaatactctaattatta---tcctttataaatcaaacatgtcgtagatccgatcataat---gttcaatgttttgtttg 114  Q
    ||||||| |||| | |||||||||||| |||||| |||   ||||| |||||||||||||||||||||||||||||||||   |||||||||||| ||||    
T  10760805 aaagctttatccaggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttatttg 10760706  T
Q  115 ctttcgctatggattcataattgttgaatatgttttatgaaatttgtttttattaaaacctaaatttccaaca 187  Q
    ||| |||||| |||| |||||||||||| |||| ||||||||| |||||||| ||| ||||||||||||||||    
T  10760705 cttccgctattgatttataattgttgaacatgtattatgaaatctgtttttaataagacctaaatttccaaca 10760633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 7 - 187
Target Start/End: Complemental strand, 17055962 - 17055775
Alignment:
Q  7 agaggactgttatcaaagcttcatcctgatattcctaatactctaattatta---tcctttataaatcaaacatgtcgtagatccgatcataat---gtt 100  Q
    ||||| ||| ||| ||||||| |||| | |||||||||||| |||||| |||   ||||| |||||||||||||||||||||||||||||||||   |||    
T  17055962 agagggctgctatgaaagctttatccaggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgtt 17055863  T
Q  101 caatgttttgtttgctttcgctatggattcataattgttgaatatgttttatgaaatttg-tttttattaaaacctaaatttccaaca 187  Q
    ||||||||||||||||| |||||| ||||||||||||||||| || ||||||||||  || |||||||||| ||||||||||| ||||    
T  17055862 caatgttttgtttgcttccgctattgattcataattgttgaacatattttatgaaaactgttttttattaagacctaaatttcgaaca 17055775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 7 - 184
Target Start/End: Complemental strand, 55003581 - 55003398
Alignment:
Q  7 agaggactgttatcaaagcttcatcctgatattcctaatactctaattatta---tcctttataaatcaaacatgtcgtagatccgatcataat---gtt 100  Q
    ||||| ||| ||| ||||||| |||| |||||| ||||||| |||||| |||   | ||| |||||| ||||||||||||||||||||||||||   |||    
T  55003581 agagggctgctatgaaagctttatccagatatttctaataccctaattcttaatatacttgataaattaaacatgtcgtagatccgatcataatcatgtt 55003482  T
Q  101 caatgttttgtttgctttcgctatggattcataattgttgaatatgttttatgaaatttgtttttattaaaacctaaatttcca 184  Q
    ||||||||| |||||||  ||||| ||||||||||||||||| |||||||||||||| |||||||||||| |||||||||||||    
T  55003481 caatgttttatttgcttctgctattgattcataattgttgaacatgttttatgaaatctgtttttattaagacctaaatttcca 55003398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 21 - 188
Target Start/End: Complemental strand, 42191375 - 42191202
Alignment:
Q  21 aaagcttcatcctgatattcctaatactctaattattat---cctttataaatcaaacatgtcgtagatccgatcataat---gttcaatgttttgtttg 114  Q
    ||||||| |||| | |||||||||||| |||||| |||    |||| |||||||||||||||||||||||||||||||||   |||||||||||||||||    
T  42191375 aaagctttatccaggtattcctaataccctaattcttaatacccttgataaatcaaacatgtcgtagatccgatcataatcaggttcaatgttttgtttg 42191276  T
Q  115 ctttcgctatggattcataattgttgaatatgttttatgaaatttgtttttattaaaacctaaatttccaacaa 188  Q
    ||| |||||| |||||| |||||||||| |||| ||||||||| | ||| |||||| ||||| |||||||||||    
T  42191275 cttccgctattgattcacaattgttgaacatgtattatgaaatctatttatattaagacctatatttccaacaa 42191202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 57 - 181
Target Start/End: Complemental strand, 53069170 - 53069043
Alignment:
Q  57 tatcctttataaatcaaacatgtcgtagatccgatcataat---gttcaatgttttgtttgctttcgctatggattcataattgttgaatatgttttatg 153  Q
    ||||||| |||||||||||||||| ||||||||||||||||   |||||||||||||||||||| |||||| |||| |||||||||||| |||||||||     
T  53069170 tatccttgataaatcaaacatgtcatagatccgatcataatcatgttcaatgttttgtttgcttccgctatcgatttataattgttgaacatgttttata 53069071  T
Q  154 aaatttgtttttattaaaacctaaattt 181  Q
    |||| |||||||||||| ||||||||||    
T  53069070 aaatctgtttttattaagacctaaattt 53069043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 21 - 187
Target Start/End: Original strand, 8331791 - 8331963
Alignment:
Q  21 aaagcttcatcctgatattcctaatactctaattatta---tcctttataaatcaaacatgtcgtagatccgatcataat---gttcaatgttttgtttg 114  Q
    ||||||| |||| | |||||||||||  |||||| |||   ||||| |||||||||||||||||||||||||||||||||   |||||||||||||||||    
T  8331791 aaagctttatccaggtattcctaatagcctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttg 8331890  T
Q  115 ctttcgctatggattcataattgttgaatatgttttatgaaatttgtttttattaaaacctaaatttccaaca 187  Q
    ||| |||||| |||| |||||||||||| ||||||||| |||| | ||| |||||| | ||||||||||||||    
T  8331891 cttccgctattgatttataattgttgaacatgttttataaaatctatttatattaagagctaaatttccaaca 8331963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 65 - 187
Target Start/End: Complemental strand, 48128155 - 48128030
Alignment:
Q  65 ataaatcaaacatgtcgtagatccgatcataat---gttcaatgttttgtttgctttcgctatggattcataattgttgaatatgttttatgaaatttgt 161  Q
    ||||||||||||||||||||| |||||||||||   ||||||||||||||||| || |||||| ||||||||||||||||| |||||| ||||||| |||    
T  48128155 ataaatcaaacatgtcgtagaaccgatcataatcatgttcaatgttttgtttgtttccgctattgattcataattgttgaacatgtttcatgaaatctgt 48128056  T
Q  162 ttttattaaaacctaaatttccaaca 187  Q
    ||||||| | ||||||||||||||||    
T  48128055 ttttattgagacctaaatttccaaca 48128030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 65 - 188
Target Start/End: Original strand, 28964919 - 28965043
Alignment:
Q  65 ataaatcaaacatgtcgtagatccgatcata---atgttcaatgttttgtttgctttcgctatggattcataattgttgaatatgttttatgaaatttgt 161  Q
    |||||||||||||||||||||||||||||||   |||||||||||||||||||||| |||||| |||||   ||||||||| |||||||||||||| |||    
T  28964919 ataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctattgattc---attgttgaacatgttttatgaaatctgt 28965015  T
Q  162 tttt-attaaaacctaaatttccaacaa 188  Q
    |||| ||||| |||||||||||||||||    
T  28965016 ttttaattaagacctaaatttccaacaa 28965043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 36 - 187
Target Start/End: Complemental strand, 38449203 - 38449048
Alignment:
Q  36 tattcctaatactctaattatta---tcctttataaatcaaacatgtcgtagatccgatcataat---gttcaatgttttgtttgctttcgctatggatt 129  Q
    |||||||||||| |||||| |||   ||||| ||||||||||||||| |||||||||||||||||   |||||||||||||||||||| |||||| ||||    
T  38449203 tattcctaataccctaattcttaatatccttgataaatcaaacatgttgtagatccgatcataatcatgttcaatgttttgtttgcttccgctattgatt 38449104  T
Q  130 cataattgttgaatatgttttatgaaatttgtttttattaaaacctaaatttccaaca 187  Q
     |||||||||||| |||| ||||||||  | ||| |||||| ||| ||||||||||||    
T  38449103 tataattgttgaacatgtattatgaaa--tctttatattaagaccgaaatttccaaca 38449048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 36 - 187
Target Start/End: Original strand, 13445080 - 13445227
Alignment:
Q  36 tattcctaatactctaattatta---tcctttataaatcaaacatgtcgtagatccgatcataatgttcaatgttttgtttgctttcgctatggattcat 132  Q
    |||||||||||| |||||| |||   ||||| ||||||||||||||||||||||||||||||       |||||||| ||||||| |||||| |||| ||    
T  13445080 tattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcat-------aatgttttatttgcttccgctattgatttat 13445172  T
Q  133 aattgttgaatatgttttatgaaatttgtttttattaaaacctaaatttccaaca 187  Q
    |||||||||| ||||| ||| |||| | |||||||| | ||||||||||| ||||    
T  13445173 aattgttgaacatgttctatcaaatctatttttatttagacctaaatttctaaca 13445227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 36 - 188
Target Start/End: Complemental strand, 17593422 - 17593263
Alignment:
Q  36 tattcctaatactctaattatta---tcctttataaatcaaacatgtcgtagatccgatcata---atgttcaatgttttgtttgctttcgctatggatt 129  Q
    |||||||||||| |||||| |||   | ||| |||||| ||||||||||||||||||||||||   |||||||||||||||||||||| ||| || ||||    
T  17593422 tattcctaataccctaattcttaatattcttgataaattaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgcgattgatt 17593323  T
Q  130 cataattgttgaatatgttttatgaaatttgttttt-attaaaacctaaatttccaacaa 188  Q
     |  ||||||||| || | ||||||||| | ||||| ||||| |||||||||||| ||||    
T  17593322 tacgattgttgaacatctattatgaaatatatttttaattaagacctaaatttcctacaa 17593263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 36 - 123
Target Start/End: Original strand, 34300516 - 34300609
Alignment:
Q  36 tattcctaatactctaattatta---tcctttataaatcaaacatgtcgtagatccgatcata---atgttcaatgttttgtttgctttcgcta 123  Q
    |||||||||||| |||||| |||   |||||||||||||||| ||||||||||||||||||||   |||||||||||||||||||||| |||||    
T  34300516 tattcctaataccctaattcttaatatcctttataaatcaaatatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgcta 34300609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 96 - 188
Target Start/End: Complemental strand, 24643626 - 24643533
Alignment:
Q  96 atgttcaatgttttgtttgctttcgctatggattcataattgttgaatatgttt--tatgaaatttgtttttattaaaacctaaatttccaacaa 188  Q
    |||||||||||||| ||| ||| |||||| ||||||||| ||||||| ||||||  |||||| |||| ||||||||| |||||||||||||||||    
T  24643626 atgttcaatgttttatttacttccgctattgattcataaatgttgaacatgttttatatgaagtttg-ttttattaagacctaaatttccaacaa 24643533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 177
Target Start/End: Original strand, 46656668 - 46656850
Alignment:
Q  1 ttgttgagaggactgttatcaaagcttcatcctgatattcctaatactctaattat---tatcctttataaatcaaacatgtcgtagatccgatcata-- 95  Q
    |||||||||||  ||| || |||||||||| | | |||| ||||||| || ||| |   |||| || ||||||||||||| |||||||||||||||||      
T  46656668 ttgttgagagggttgtcatgaaagcttcattcaggtatttctaataccctcattctcaatatcattgataaatcaaacatatcgtagatccgatcataat 46656767  T
Q  96 -atgttcaatgttttgtttgctttcgctatggattcataattgttgaatatgttttatgaaatttgtttttattaaaacctaa 177  Q
     || || |||||||| ||| |||  |||||  ||||||| || ||||| |||||||||||||| |||||||||| | ||||||    
T  46656768 tatattgaatgttttatttacttcagctattaattcatatttattgaacatgttttatgaaatatgtttttatttagacctaa 46656850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 109; Significance: 6e-55; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 5 - 223
Target Start/End: Complemental strand, 25387675 - 25387452
Alignment:
Q  5 tgagaggactgttatcaaagcttcatcctgatattcctaatactctaattatta---tcctttataaatcaaacatgtcgtagatccgatcataat---g 98  Q
    ||||||| ||||| | ||||||| |||| | |||||||||||| |||||| |||   ||||| |||||||||||||||||||||||||||||||||   |    
T  25387675 tgagagggctgtttttaaagctttatccaggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatg 25387576  T
Q  99 ttcaatgttttgtttgctttcgctatggattcataattgttgaatatgttttatgaaatttgtttttattaaaacctaaatttccaacaacggggtatca 198  Q
    ||||||||||||||||||| |||||| |||||||| |||||||| |||||||||||||| ||||| |||||| | ||| ||||||||||| | |||||||    
T  25387575 ttcaatgttttgtttgcttccgctattgattcatatttgttgaacatgttttatgaaatctgtttatattaagatctatatttccaacaa-gtggtatca 25387477  T
Q  199 aagcggtcttcatgtttgatttatt 223  Q
     ||||||||||||||||||||||||    
T  25387476 gagcggtcttcatgtttgatttatt 25387452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 36 - 183
Target Start/End: Original strand, 34740005 - 34740158
Alignment:
Q  36 tattcctaatactctaattatta---tcctttataaatcaaacatgtcgtagatccgatcataat---gttcaatgttttgtttgctttcgctatggatt 129  Q
    |||||||||||| |||||| |||   ||||| |||||||||||||||||||||||||||||||||   |||||||||||||||||||| |||||| ||||    
T  34740005 tattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctattgatt 34740104  T
Q  130 cataattgttgaatatgttttatgaaatttgtttttattaaaacctaaatttcc 183  Q
    |||||||| |||| |||||||||||||| ||||| |||||| ||||||||||||    
T  34740105 cataattgatgaacatgttttatgaaatctgtttatattaagacctaaatttcc 34740158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 187
Target Start/End: Original strand, 44409996 - 44410186
Alignment:
Q  1 ttgttgagaggactgttatcaaagcttcatcctgatattcctaatactctaattatt---atcctttataaatcaaacatgtcgtagatccgatcata-- 95  Q
    ||||||||||| |||  || ||||||| |||| | |||||||||||||  |||| ||   |||||| ||||||||||||||||||||||||| |||||      
T  44409996 ttgttgagagggctgccataaaagctttatccaggtattcctaatact--aattcttgatatccttgataaatcaaacatgtcgtagatccgttcatatt 44410093  T
Q  96 -atgttcaatgttttgtttgctttcgctatggattcataattgttgaatatgttttatgaaatttgtttttattaaaacctaaatttccaaca 187  Q
     |||||||||||||||||||||| |||||| |||||||||| |||||| |||||||||||||| |||||||| ||| ||||||||||||||||    
T  44410094 tatgttcaatgttttgtttgcttccgctattgattcataatcgttgaacatgttttatgaaatctgtttttagtaagacctaaatttccaaca 44410186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 65 - 187
Target Start/End: Original strand, 50306240 - 50306365
Alignment:
Q  65 ataaatcaaacatgtcgtagatccgatcataat---gttcaatgttttgtttgctttcgctatggattcataattgttgaatatgttttatgaaatttgt 161  Q
    ||||||||||||||||||||||||||| |||||   |||||||||||||||||||| |||||| ||||||||||||||||| |||||||||||||| |||    
T  50306240 ataaatcaaacatgtcgtagatccgattataatcatgttcaatgttttgtttgcttccgctattgattcataattgttgaacatgttttatgaaatctgt 50306339  T
Q  162 ttttattaaaacctaaatttccaaca 187  Q
    || |||||| ||||||||||||||||    
T  50306340 ttatattaagacctaaatttccaaca 50306365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 5 - 188
Target Start/End: Original strand, 1078212 - 1078401
Alignment:
Q  5 tgagaggactgttatcaaagcttcatcctgatattcctaatactctaattatta---tcctttataaatcaaacatgtcgtagatccgatcataat---g 98  Q
    ||||||| ||||||  ||||||| |||| | ||||| |||||| |||||| |||   | |||  ||||||||||||||||||||||||||||||||   |    
T  1078212 tgagagggctgttacaaaagctttatccaggtattcttaataccctaattcttaatattcttggtaaatcaaacatgtcgtagatccgatcataatcatg 1078311  T
Q  99 ttcaatgttttgtttgctttcgctatggattcataattgttgaatatgttttatgaaatttgtttttattaaaacctaaatttccaacaa 188  Q
    ||||||||||||||||||| |||||| |||| |||||||||||| |||| ||||||||| ||||| |||||| |||||||||||||||||    
T  1078312 ttcaatgttttgtttgcttccgctattgattaataattgttgaacatgtattatgaaatctgtttatattaagacctaaatttccaacaa 1078401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 5 - 187
Target Start/End: Complemental strand, 25381706 - 25381518
Alignment:
Q  5 tgagaggactgttatcaaagcttcatcctgatattcctaatactctaattatta---tcctttataaatcaaacatgtcgtagatccgatcataat---g 98  Q
    ||||||| ||||||  ||||||| |||| | |||||||||||| |||||| |||   |||||  |||||||||||| |||||||||||||||||||   |    
T  25381706 tgagagggctgttacaaaagctttatccaggtattcctaataccctaattcttaatatccttggtaaatcaaacatttcgtagatccgatcataatcatg 25381607  T
Q  99 ttcaatgttttgtttgctttcgctatggattcataattgttgaatatgttttatgaaatttgtttttattaaaacctaaatttccaaca 187  Q
    ||||||||||||||||||| |||||| |||||||| |||||||| |||| ||||||||| ||||| |||||| ||||| ||||||||||    
T  25381606 ttcaatgttttgtttgcttccgctattgattcatagttgttgaacatgtattatgaaatctgtttatattaagacctatatttccaaca 25381518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 36 - 188
Target Start/End: Complemental strand, 24963842 - 24963684
Alignment:
Q  36 tattcctaatactctaattatta---tcctttataaatcaaacatgtcgtagatccgatcata---atgttcaatgttttgtttgctttcgctatggatt 129  Q
    ||||||||||||| ||||| |||   | ||| |||||||||||||| |||||||||| |||||   |||||||||||||||||||||| |||||| ||||    
T  24963842 tattcctaatactttaattcttactattcttgataaatcaaacatggcgtagatccgttcatattcatgttcaatgttttgtttgcttccgctattgatt 24963743  T
Q  130 cataattgttgaatatgttttatgaaatttgtttttattaaaacctaaatttccaacaa 188  Q
    |||| | |||||| |||||||||||||| |||||||||||| | |||||||| ||||||    
T  24963742 catattcgttgaacatgttttatgaaatctgtttttattaagatctaaattttcaacaa 24963684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 65 - 188
Target Start/End: Complemental strand, 24926862 - 24926737
Alignment:
Q  65 ataaatcaaacatgtcgtagatccgatcata---atgttcaatgttttgtttgctttcgctatggattcataattgttgaatatgttttatgaaatttgt 161  Q
    ||||||||||||||||||||||||| |||||   ||||||||||||||| |||||| |||||| |||||||||| |||||| |||||||||| ||| |||    
T  24926862 ataaatcaaacatgtcgtagatccgttcatattaatgttcaatgttttggttgcttccgctattgattcataatcgttgaacatgttttatg-aatctgt 24926764  T
Q  162 ttttattaaaacctaaatttccaacaa 188  Q
    ||||||||| |||||||||| ||||||    
T  24926763 ttttattaagacctaaattttcaacaa 24926737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 65 - 188
Target Start/End: Original strand, 31058095 - 31058221
Alignment:
Q  65 ataaatcaaacatgtcgtagatccgatcataat---gttcaatgttttgtttgctttcgctatggattcataattgttgaatatgttttatgaaatttgt 161  Q
    |||||||||||||||||||||||||||||||||   |||||||||||||||||||| |||||| |||| |  ||||||||| |||| ||||||||| |||    
T  31058095 ataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctattgatttacgattgttgaacatgtattatgaaatctgt 31058194  T
Q  162 ttttattaaaacctaaatttccaacaa 188  Q
    || |||||| ||||||||||| |||||    
T  31058195 ttatattaagacctaaatttctaacaa 31058221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 38152144 - 38151923
Alignment:
Q  1 ttgttgagaggactgttatcaaagcttcatcctgatattcctaatactctaattatta---tcctttataaatcaaacatgtcgtagatccgatcataat 97  Q
    |||||||||||| ||| ||||||| ||||| | | |||||||||||| |||||| |||   |  || ||||||||||||||||||||||| ||||||       
T  38152144 ttgttgagaggattgtcatcaaagtttcattcaggtattcctaataccctaattcttaatatgtttgataaatcaaacatgtcgtagatctgatcat--- 38152048  T
Q  98 gttcaatgttttgtttgctttcgctatggattcataattgttgaatatgttttatgaaatttgtttttattaaaacctaaatttccaacaacggggtatc 197  Q
    ||||||| |||||||||||| |||| | |||| |||||||||||| |||||||||||||| |  ||||||||| || |  ||||| ||||| | ||||||    
T  38152047 gttcaatattttgtttgcttccgctgttgattaataattgttgaacatgttttatgaaatct-attttattaagacttggatttctaacaa-gtggtatc 38151950  T
Q  198 aaagcg-gtcttcatgtttgatttatt 223  Q
    | |||| ||||||||||||||||||||    
T  38151949 agagcgagtcttcatgtttgatttatt 38151923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 65 - 223
Target Start/End: Original strand, 31051595 - 31051760
Alignment:
Q  65 ataaatcaaacatgtcgtagatccgatcataat---gttcaatgttttgtttgctttcgctatggattcataattgttgaatatgttt-----tatgaaa 156  Q
    |||||||||||||||||||||||| ||||||||   |||||||||||||||||||| |||||| |||| |  ||||||||| |||| |     |||||||    
T  31051595 ataaatcaaacatgtcgtagatccaatcataatcatgttcaatgttttgtttgcttccgctattgatttacgattgttgaacatgtattatgatatgaaa 31051694  T
Q  157 tttgtttttattaaaacctaaatttccaacaacggggtatcaaagcggtcttcatgtttgatttatt 223  Q
    | ||||| |||||| ||||||||| | ||||| | ||||||| ||||||||||||||||||| ||||    
T  31051695 tctgtttatattaagacctaaattcctaacaa-gtggtatcagagcggtcttcatgtttgatctatt 31051760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 69 - 187
Target Start/End: Original strand, 27955216 - 27955336
Alignment:
Q  69 atcaaacatgtcgtagatccgatcataat---gttcaatgttttgtttgctttcgctatggattcataattgttgaatatgttttatgaaatttgttttt 165  Q
    ||||||||||| |||||||||||||||||   |||||||||||||||||||| |||||| |||| || ||| || || |||||||||||||| |||||||    
T  27955216 atcaaacatgttgtagatccgatcataatcatgttcaatgttttgtttgcttccgctattgatt-atgattattaaacatgttttatgaaatctgttttt 27955314  T
Q  166 attaaaacctaaatttccaaca 187  Q
    ||||| ||||||||||| ||||    
T  27955315 attaagacctaaatttctaaca 27955336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 65 - 187
Target Start/End: Complemental strand, 12183692 - 12183562
Alignment:
Q  65 ataaatcaaacatgtcgtagatccgatcataat---gttcaatgttttgtttgctttcgctatggattcataatt-----gttgaatatgttttatgaaa 156  Q
    |||||||||||||||||||||||| ||||||||   ||||||| |||||||||||| | |||| |||||||||||     |||||| || ||||||||||    
T  12183692 ataaatcaaacatgtcgtagatccaatcataattatgttcaatattttgtttgcttccactattgattcataattatattgttgaacatattttatgaaa 12183593  T
Q  157 tttgtttttattaaaacctaaatttccaaca 187  Q
    | | |||||||||| | ||||||||||||||    
T  12183592 tctatttttattaagaactaaatttccaaca 12183562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 5 - 154
Target Start/End: Complemental strand, 8093017 - 8092862
Alignment:
Q  5 tgagaggactgttatcaaagcttcatcctgatattcctaatactctaattatta---tcctttataaatcaaacatgtcgtagatccgatcata---atg 98  Q
    ||||||||||| ||  ||||||| |||| | ||||||| |||| | |||| |||   ||||| |||||||||||||||| ||||||||||||||   |||    
T  8093017 tgagaggactgctacaaaagctttatccaggtattcctcatacccaaattcttaatatccttgataaatcaaacatgtcatagatccgatcataatcatg 8092918  T
Q  99 ttcaatgttttgtttgctttcgctatggattcataattgttgaatatgttttatga 154  Q
    ||||||||||| |||||||  ||||| |||| |  |||||||||||||| ||||||    
T  8092917 ttcaatgttttatttgcttctgctattgatttacgattgttgaatatgtattatga 8092862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 105; Significance: 1e-52; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 21 - 223
Target Start/End: Complemental strand, 35090804 - 35090598
Alignment:
Q  21 aaagcttcatcctgatattcctaatactctaattatta---tcctttataaatcaaacatgtcgtagatccgatcataat---gttcaatgttttgtttg 114  Q
    ||||||| |||| | |||||||||||| |||||| |||   | ||| |||||||||||||||||||||||||||||||||   |||||||||||||||||    
T  35090804 aaagctttatccaggtattcctaatacactaattgttaatattcttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttg 35090705  T
Q  115 ctttcgctatggattcataattgttgaatatgttttatgaaatttgtttttattaaaacctaaatttccaacaacggggtatcaaagcggtcttcatgtt 214  Q
    ||| |||||| ||||||||||||||||| |||||||||||||| ||||| |||||| |||||||||| |||||| | ||||||| |||||||||||||||    
T  35090704 cttccgctattgattcataattgttgaacatgttttatgaaatctgtttatattaagacctaaattt-caacaa-gtggtatcagagcggtcttcatgtt 35090607  T
Q  215 tgatttatt 223  Q
    |||||||||    
T  35090606 tgatttatt 35090598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 21 - 223
Target Start/End: Original strand, 13456104 - 13456311
Alignment:
Q  21 aaagcttcatcctgatattcctaatactctaattattat---cctttataaatcaaacatgtcgtagatccgatcataat---gttcaatgttttgtttg 114  Q
    ||||||| |||| | |||||||||||| |||||| |||    |||| |||||||||||||||||||||||||||||||||   |||||||||||||||||    
T  13456104 aaagctttatccaggtattcctaataccctaattcttaatacccttgataaatcaaacatgtcgtagatccgatcataatcaggttcaatgttttgtttg 13456203  T
Q  115 ctttcgctatggattcataattgttgaatatgttttatgaaatttgtttttattaaaacctaaatttccaacaacggggtatcaaagcggtcttcatgtt 214  Q
    ||| |||||| |||||| |||||||||| |||| ||||||||| | ||| |||||| ||||| ||||||||||| | ||||||| |||||||||||||||    
T  13456204 cttccgctattgattcacaattgttgaacatgtattatgaaatctatttatattaagacctatatttccaacaa-gtggtatcagagcggtcttcatgtt 13456302  T
Q  215 tgatttatt 223  Q
    |||||||||    
T  13456303 tgatttatt 13456311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 7 - 187
Target Start/End: Original strand, 36750405 - 36750591
Alignment:
Q  7 agaggactgttatcaaagcttcatcctgatattcctaatactctaattatta---tcctttataaatcaaacatgtcgtagatccgatcataat---gtt 100  Q
    ||||| ||| ||| |||| || |||| | |||||||||||| |||||| |||   ||||| |||||||||||||||||||||||||||||||||   |||    
T  36750405 agagggctgctatgaaagttttatccaggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgtt 36750504  T
Q  101 caatgttttgtttgctttcgctatggattcataattgttgaatatgttttatgaaatttgtttttattaaaacctaaatttccaaca 187  Q
    ||||||||||||||||| |||||| ||||||||||||||||| |||||||||||||| |||||||||||| || |||||||||||||    
T  36750505 caatgttttgtttgcttccgctattgattcataattgttgaacatgttttatgaaatctgtttttattaagacttaaatttccaaca 36750591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 21 - 187
Target Start/End: Complemental strand, 28683100 - 28682928
Alignment:
Q  21 aaagcttcatcctgatattcctaatactctaattattat---cctttataaatcaaacatgtcgtagatccgatcataat---gttcaatgttttgtttg 114  Q
    ||||||| |||| | |||||||||||| |||||| |||    |||| |||||||||||||||||||||||||||||||||   |||||||||||||||||    
T  28683100 aaagctttatccaggtattcctaataccctaattcttaataaccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttg 28683001  T
Q  115 ctttcgctatggattcataattgttgaatatgttttatgaaatttgtttttattaaaacctaaatttccaaca 187  Q
    ||| |||||| ||||||||||||||||| |||||||||||||| ||||| |||||| ||||||||||||||||    
T  28683000 cttccgctattgattcataattgttgaacatgttttatgaaatctgtttatattaagacctaaatttccaaca 28682928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 36 - 223
Target Start/End: Original strand, 31002396 - 31002589
Alignment:
Q  36 tattcctaatactctaattatt---atcctttataaatcaaacatgtcgtagatccgatcataat---gttcaatgttttgtttgctttcgctatggatt 129  Q
    |||||||||||| |||||| ||   || ||| |||||||||||||||||||||||||||||||||   ||||||| |||||||||||| |||||| ||||    
T  31002396 tattcctaataccctaattcttgatattcttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatattttgtttgcttccgctattgatt 31002495  T
Q  130 cataattgttgaatatgttttatgaaatttgttttt-attaaaacctaaatttccaacaacggggtatcaaagcggtcttcatgtttgatttatt 223  Q
     |  ||||||||| |||| ||||||||| ||||||| ||||| ||||||||||||||||| | ||||||| ||||||||||||||||||||||||    
T  31002496 tacgattgttgaacatgtattatgaaatctgtttttaattaagacctaaatttccaacaa-gtggtatcagagcggtcttcatgtttgatttatt 31002589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 21 - 181
Target Start/End: Complemental strand, 35084831 - 35084665
Alignment:
Q  21 aaagcttcatcctgatattcctaatactctaattatta---tcctttataaatcaaacatgtcgtagatccgatcataatg---ttcaatgttttgtttg 114  Q
    ||||||| |||| | |||||||||||| |||||| |||   | ||| |||||||||||||||||||||||||||||||||    ||||||||||||||||    
T  35084831 aaagctttatccaggtattcctaatacactaattgttaatattcttgataaatcaaacatgtcgtagatccgatcataatcattttcaatgttttgtttg 35084732  T
Q  115 ctttcgctatggattcataattgttgaatatgttttatgaaatttgtttttattaaaacctaaattt 181  Q
    ||| |||||| ||||||||||||||||| |||||||||||||| ||||| |||||| ||||||||||    
T  35084731 cttccgctattgattcataattgttgaacatgttttatgaaatctgtttatattaagacctaaattt 35084665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 21 - 187
Target Start/End: Original strand, 13462045 - 13462217
Alignment:
Q  21 aaagcttcatcctgatattcctaatactctaattattat---cctttataaatcaaacatgtcgtagatccgatcataat---gttcaatgttttgtttg 114  Q
    ||||||| |||| | |||||||||||| |||||| |||    |||| |||||||||||||||||||||||||||||||||   |||||||||||||||||    
T  13462045 aaagctttatccaggtattcctaataccctaattcttaatacccttgataaatcaaacatgtcgtagatccgatcataatcaggttcaatgttttgtttg 13462144  T
Q  115 ctttcgctatggattcataattgttgaatatgttttatgaaatttgtttttattaaaacctaaatttccaaca 187  Q
    ||| |||||| |||||| |||||||||| |||| ||||||||| | ||| |||||| ||||| ||||||||||    
T  13462145 cttccgctattgattcacaattgttgaacatgtattatgaaatctatttatattaagacctatatttccaaca 13462217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 66 - 187
Target Start/End: Complemental strand, 35438816 - 35438693
Alignment:
Q  66 taaatcaaacatgtcgtagatccgatcataat---gttcaatgttttgtttgctttcgctatggattcataattgttgaatatgttttatgaaatttgtt 162  Q
    ||||||||||||||||||||||||||||||||   |||||||||||| ||||||| |||||| ||||||||| ||||||| ||||||||||||||||| |    
T  35438816 taaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttatttgcttccgctattgattcataactgttgaacatgttttatgaaatttg-t 35438718  T
Q  163 tttattaaaacctaaatttccaaca 187  Q
    ||||||||  |||||||||||||||    
T  35438717 tttattaaggcctaaatttccaaca 35438693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 65 - 182
Target Start/End: Complemental strand, 13149794 - 13149674
Alignment:
Q  65 ataaatcaaacatgtcgtagatccgatcataat---gttcaatgttttgtttgctttcgctatggattcataattgttgaatatgttttatgaaatttgt 161  Q
    |||||||||||||||||||||||||||||||||   |||||||||||||||||||| |||||| |||| |  ||||||||| |||| ||||||||| |||    
T  13149794 ataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctattgatttacgattgttgaacatgtattatgaaatctgt 13149695  T
Q  162 ttttattaaaacctaaatttc 182  Q
    || |||||| |||||||||||    
T  13149694 ttatattaagacctaaatttc 13149674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 36 - 187
Target Start/End: Original strand, 31008374 - 31008532
Alignment:
Q  36 tattcctaatactctaattatt---atcctttataaatcaaacatgtcgtagatccgatcataat---gttcaatgttttgtttgctttcgctatggatt 129  Q
    |||||||||||| |||||| ||   || ||| |||||||||||||||||||||||||||||||||   ||||||| |||||||||||| |||||| ||||    
T  31008374 tattcctaataccctaattcttgatattcttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatattttgtttgcttccgctattgatt 31008473  T
Q  130 cataattgttgaatatgttttatgaaatttgttttt-attaaaacctaaatttccaaca 187  Q
     |  ||||||||| |||| ||||||||| ||||||| ||||| ||||||||||||||||    
T  31008474 tacgattgttgaacatgtattatgaaatctgtttttaattaagacctaaatttccaaca 31008532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 21 - 188
Target Start/End: Complemental strand, 44716960 - 44716786
Alignment:
Q  21 aaagcttcatcctgatattcctaatactctaattatta---tcctttataaatcaaacatgtcgtagatccgatcataat---gttcaatgttttgttt- 113  Q
    ||||||| |||| | |||||||||||| |||||| |||   |||||  ||||||||||||||||||||||||||||||||   |||||||||||| |||     
T  44716960 aaagctttatccaggtattcctaataccctaattcttaatatccttggtaaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttctttt 44716861  T
Q  114 gctttcgctatggattcataattgttgaatatgttttatgaaatttgtttttattaaaacctaaatttccaacaa 188  Q
    |||| |||||| |||| ||||  |||||| ||||||||||| || |||||||||||| ||||||||||| |||||    
T  44716860 gcttccgctattgattgataaccgttgaacatgttttatgatatctgtttttattaagacctaaatttctaacaa 44716786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 65 - 187
Target Start/End: Original strand, 30965379 - 30965505
Alignment:
Q  65 ataaatcaaacatgtcgtagatccgatcataat---gttcaatgttttgtttgctttcgctatggattcataattgttgaatatgttttatgaaatttgt 161  Q
    |||||||||||||||||||||||||||||||||   ||||||| |||||||||||| |||||| |||| || ||||||||| |||| ||||||||| |||    
T  30965379 ataaatcaaacatgtcgtagatccgatcataatcatgttcaatattttgtttgcttccgctattgatttatgattgttgaacatgtattatgaaatctgt 30965478  T
Q  162 tttt-attaaaacctaaatttccaaca 187  Q
    |||| ||||| ||||||||||| ||||    
T  30965479 ttttaattaagacctaaatttctaaca 30965505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 69 - 187
Target Start/End: Complemental strand, 11048657 - 11048536
Alignment:
Q  69 atcaaacatgtcgtagatccgatcataat---gttcaatgttttgtttgctttcgctatggattcataattgttgaatatgttttatgaaatttgttttt 165  Q
    |||||||||| |||| |||| ||||||||   ||||||||||||||||||||  ||||| ||||||||||||||| | |||||||||||||||| |||||    
T  11048657 atcaaacatgacgtatatccaatcataatcatgttcaatgttttgtttgcttcagctattgattcataattgttggacatgttttatgaaatttattttt 11048558  T
Q  166 attaaaacctaaatttccaaca 187  Q
    | ||| ||||||||||||||||    
T  11048557 aataagacctaaatttccaaca 11048536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 57 - 187
Target Start/End: Original strand, 23343604 - 23343737
Alignment:
Q  57 tatcctttataaatcaaacatgtcgtagatccgatcata---atgttcaatgttttgtttgctttcgctatggattcataattgttgaatatgttttatg 153  Q
    ||||||| |||||||||||||||||||||| || |||||   |||||||||||||||||||||| |||| | ||||| |||| |||||| ||||||||||    
T  23343604 tatccttgataaatcaaacatgtcgtagattcgttcatattcatgttcaatgttttgtttgcttccgctgttgattcgtaatcgttgaacatgttttatg 23343703  T
Q  154 aaatttgtttttattaaaacctaaatttccaaca 187  Q
    |||| | || |||| || | ||||||||| ||||    
T  23343704 aaatctcttcttatcaagatctaaatttcaaaca 23343737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 29833195 - 29833419
Alignment:
Q  1 ttgttgagaggactgttatcaaagcttcatcctgatattcctaatactctaattattatc--ctttataaatcaaacatgtcgtagatccgatcata--- 95  Q
    |||||||||||  ||| |||||| |||||||| | ||||| |||||| ||||||||| |   ||| ||||||||||||||| || ||||||||||||       
T  29833195 ttgttgagagggttgtcatcaaa-cttcatccaggtattcttaatac-ctaattattgttatcttgataaatcaaacatgttgtcgatccgatcataatt 29833292  T
Q  96 atgttcaatgttttgtttgctttcgctatggattcataattgttgaatatgttttatgaaatttgtttttattaaaacctaaatttccaacaacggggta 195  Q
    ||||||||| |||| |||| || || ||| |||||| |||| || || |||| ||||||||| | ||| |||| | ||||||||||| ||||| |  |||    
T  29833293 atgttcaatattttatttgtttccgttattgattcacaattattaaacatgtattatgaaatctctttatatttatacctaaatttctaacaa-gtagta 29833391  T
Q  196 tcaaagcggtcttcatgtttgatttatt 223  Q
    ||| ||| ||||||||||||||||||||    
T  29833392 tcagagcagtcttcatgtttgatttatt 29833419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 99 - 188
Target Start/End: Complemental strand, 1388090 - 1388002
Alignment:
Q  99 ttcaatgttttgtttgctttcgctatggattcataattgttgaatatgttttatgaaatttgtttttattaaaacctaaatttccaacaa 188  Q
    |||||||||||||||| || || ||| ||||||||||| ||||| |||||||||||| | | ||||||||   |||||||||| ||||||    
T  1388090 ttcaatgttttgtttgtttccgttattgattcataattattgaa-atgttttatgaagtatatttttattttgacctaaatttacaacaa 1388002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 101; Significance: 3e-50; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 21 - 223
Target Start/End: Complemental strand, 3817466 - 3817259
Alignment:
Q  21 aaagcttcatcctgatattcctaatactctaattatta---tcctttataaatcaaacatgtcgtagatccgatcataat---gttcaatgttttgtttg 114  Q
    ||||||| |||| | |||||||||||| |||||| |||   ||||| |||||||||||||||||||||||||||||||||   |||||||||||||||||    
T  3817466 aaagctttatccaggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttg 3817367  T
Q  115 ctttcgctatggattcataattgttgaatatgttttatgaaatttgtttttattaaaacctaaatttccaacaacggggtatcaaagcggtcttcatgtt 214  Q
    ||| |||||| ||||||||||||||||| |||| ||||||||| ||||| |||||| ||||||||||||||||| | ||||||| |||||| || |||||    
T  3817366 cttccgctattgattcataattgttgaacatgtattatgaaatctgtttatattaagacctaaatttccaacaa-gtggtatcagagcggtgtttatgtt 3817268  T
Q  215 tgatttatt 223  Q
    |||| ||||    
T  3817267 tgatctatt 3817259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 57 - 223
Target Start/End: Original strand, 339414 - 339582
Alignment:
Q  57 tatcctttataaatcaaacatgtcgtagatccgatcataat---gttcaatgttttgtttgctttcgctatggattcataattgttgaatatgttttatg 153  Q
    ||||||| |||||||||||||||||||||||||||||||||   |||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||    
T  339414 tatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctattgattcataattgttgaacatgttttatg 339513  T
Q  154 aaatttgtttttattaaaacctaaatttccaacaacggggtatcaaagcggtcttcatgtttgatttatt 223  Q
    |||| | ||| |||||| | ||||||||||||||| | ||||||| |||   ||||||||||||||||||    
T  339514 aaatctctttatattaagagctaaatttccaacaa-gtggtatcagagccaccttcatgtttgatttatt 339582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 21 - 188
Target Start/End: Original strand, 20238955 - 20239128
Alignment:
Q  21 aaagcttcatcctgatattcctaatactctaattatta---tcctttataaatcaaacatgtcgtagatccgatcataat---gttcaatgttttgtttg 114  Q
    ||||||| |||| | |||||||||||| |||||| |||   ||||| |||||||||||||||||||||||||||||||||   |||||||||||||||||    
T  20238955 aaagctttatccaggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttg 20239054  T
Q  115 ctttcgctatggattcataattgttgaatatgttttatgaaatttgtttttattaaaacctaaatttccaacaa 188  Q
    ||| |||||| |||  || ||||||||| |||||||||||||||||||| |||||| |||||||||||||||||    
T  20239055 cttccgctattgatgtatgattgttgaacatgttttatgaaatttgtttatattaagacctaaatttccaacaa 20239128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 21 - 187
Target Start/End: Complemental strand, 3811324 - 3811152
Alignment:
Q  21 aaagcttcatcctgatattcctaatactctaattatta---tcctttataaatcaaacatgtcgtagatccgatcataat---gttcaatgttttgtttg 114  Q
    ||||||| |||| | |||||||||||| |||||| |||   ||||| |||||||||||||||||||||||||||||||||   |||||||||||||||||    
T  3811324 aaagctttatccaggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttg 3811225  T
Q  115 ctttcgctatggattcataattgttgaatatgttttatgaaatttgtttttattaaaacctaaatttccaaca 187  Q
    ||| |||||| ||||||||||||||||| |||| ||||||||| ||||| |||||| ||||| ||||||||||    
T  3811224 cttccgctattgattcataattgttgaacatgtattatgaaatctgtttatattaagacctacatttccaaca 3811152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 21 - 189
Target Start/End: Complemental strand, 42767450 - 42767275
Alignment:
Q  21 aaagcttcatcctgatattcctaatactctaattatta---tcctttataaatcaaacatgtcgtagatccgatcataat---gttcaatgttttgtttg 114  Q
    ||||||| |||| |||||||||||||| |||||| |||   ||||| |||||||||| ||||||||||||||||||||||   ||||||| |||||||||    
T  42767450 aaagctttatccagatattcctaataccctaattcttaatatccttgataaatcaaatatgtcgtagatccgatcataatcatgttcaatattttgtttg 42767351  T
Q  115 ctttcgctatggattcataattgttgaatatgttttatgaaatttgttttt-attaaaacctaaatttccaacaac 189  Q
    ||| |||||| ||||||||||||||||| |||| ||||||||| ||||||| ||||| ||||||||||||||||||    
T  42767350 cttccgctattgattcataattgttgaacatgtattatgaaatctgtttttaattaagacctaaatttccaacaac 42767275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 21 - 188
Target Start/End: Original strand, 351790 - 351963
Alignment:
Q  21 aaagcttcatcctgatattcctaatactctaattatta---tcctttataaatcaaacatgtcgtagatccgatcataat---gttcaatgttttgtttg 114  Q
    ||||||| |||| | |||||||||||  |||||| |||   ||||| |||||||||||||||||||||||||||||||||   |||||||||||||||||    
T  351790 aaagctttatccaggtattcctaatagcctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttg 351889  T
Q  115 ctttcgctatggattcataattgttgaatatgttttatgaaatttgtttttattaaaacctaaatttccaacaa 188  Q
    ||| |||| | ||||||||||||||||| |||||||||||||| ||||| |||||| | |||||||||||||||    
T  351890 cttccgctgttgattcataattgttgaacatgttttatgaaatctgtttatattaagagctaaatttccaacaa 351963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 21 - 187
Target Start/End: Complemental strand, 28421114 - 28420942
Alignment:
Q  21 aaagcttcatcctgatattcctaatactctaattatta---tcctttataaatcaaacatgtcgtagatccgatcataat---gttcaatgttttgtttg 114  Q
    ||||||| |||| | |||||||||||  |||||| |||   ||||| |||||||||||||||||||||||||||||||||   |||||||||||||||||    
T  28421114 aaagctttatccaggtattcctaatagcctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttg 28421015  T
Q  115 ctttcgctatggattcataattgttgaatatgttttatgaaatttgtttttattaaaacctaaatttccaaca 187  Q
    ||| |||||| |||| |||||||||||| |||||||||||||| ||||| ||| || | ||||||||||||||    
T  28421014 cttccgctattgatttataattgttgaacatgttttatgaaatctgtttatatcaagagctaaatttccaaca 28420942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 65 - 188
Target Start/End: Original strand, 12804051 - 12804177
Alignment:
Q  65 ataaatcaaacatgtcgtagatccgatcata---atgttcaatgttttgtttgctttcgctatggattcataattgttgaatatgttttatgaaatttgt 161  Q
    ||||||||||||||||||||||||| ||||    ||||||||||||||| |||||| |||||| |||||||||| |||||| |||||||||||||| |||    
T  12804051 ataaatcaaacatgtcgtagatccgttcatgttcatgttcaatgttttgcttgcttccgctattgattcataatcgttgaacatgttttatgaaatctgt 12804150  T
Q  162 ttttattaaaacctaaatttccaacaa 188  Q
    ||||||||| |||||||||||||||||    
T  12804151 ttttattaagacctaaatttccaacaa 12804177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 57 - 187
Target Start/End: Complemental strand, 35148120 - 35147986
Alignment:
Q  57 tatcctttataaatcaaacatgtcgtagatccgatcataat---gttcaatgttttgtttgctttcgctatggattcataattgttgaatatgttttatg 153  Q
    ||||||| ||||||||||| |||||||||||||||||||||   |||||||||||||||||||| |||||| |||| |||||||||||| ||||||||||    
T  35148120 tatccttgataaatcaaacgtgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctatcgatttataattgttgaacatgttttatg 35148021  T
Q  154 aaatttgtttttattaaaacct-aaatttccaaca 187  Q
    |||| |||||||||||| || | ||||||||||||    
T  35148020 aaatctgtttttattaagacataaaatttccaaca 35147986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 187
Target Start/End: Original strand, 5849509 - 5849702
Alignment:
Q  1 ttgttgagaggactgttatcaaagcttcatcctgatattcctaatactctaattatt---atcctttataaatcaaacatgtcgtagatccgatcata-- 95  Q
    ||||||||||  |||| || |||||||||||| | |||||||||||  |||||| ||   |||||| ||||||||||||||||||||||||| |||||      
T  5849509 ttgttgagagagctgtcattaaagcttcatccaggtattcctaatatcctaattcttgatatccttgataaatcaaacatgtcgtagatccgttcatatt 5849608  T
Q  96 -atgttcaatgttttgtttgctttcgctatggattcataattgttgaatat-gttttatgaaatttgtttttattaaaacctaaatttccaaca 187  Q
     ||||||||||||||| |||||| |||||| ||||||||||  ||||| ||  |||||| ||||||||||||||||| |||||||||| |||||    
T  5849609 tatgttcaatgttttggttgcttccgctattgattcataatcattgaacataattttataaaatttgtttttattaagacctaaatttgcaaca 5849702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 43539969 - 43540144
Alignment:
Q  1 ttgttgagaggactgttatcaaagcttcatcctgatattcctaatactctaattatta---tcctttataaatcaaacatgtcgtagatccgatcataat 97  Q
    |||||||||||| ||||||||||||||||||| | ||||| |||||| |||||| |||   | ||| ||||||||||||||| |||||||||||||||||    
T  43539969 ttgttgagaggattgttatcaaagcttcatccaggtattcataataccctaatttttaatattcttgataaatcaaacatgttgtagatccgatcataat 43540068  T
Q  98 ---gttcaatgttttgtttgctttcgctatggattcataattgttgaatatgttttatgaaatttgtttttattaa 170  Q
       ||||||| |||| |||  || |||||| ||||||||||| ||||| ||||| |||||||| ||||||||||||    
T  43540069 catgttcaatattttatttaattccgctattgattcataattattgaacatgttctatgaaatctgtttttattaa 43540144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 21 - 187
Target Start/End: Complemental strand, 5979329 - 5979156
Alignment:
Q  21 aaagcttcatcctgatattcctaatactctaattatta---tcctttataaatcaaacatgtcgtagatccgatcata---atgttcaatgttttgtttg 114  Q
    ||||||| |||| | |||||||||||| |||||| |||   ||||| |||||||||||||||||||||||| ||||||   |||||||||  ||||||||    
T  5979329 aaagctttatccaggtattcctaataccctaattcttaacatccttaataaatcaaacatgtcgtagatccaatcataatcatgttcaatagtttgtttg 5979230  T
Q  115 ctttcgctatggattcataattgttgaatatgttttatgaaatttgttttt-attaaaacctaaatttccaaca 187  Q
    |||||||||| |||| |  |||||| || |||| ||||||||| ||||||| ||||| |||||||||| |||||    
T  5979229 ctttcgctattgatttacgattgttcaacatgtattatgaaatctgtttttaattaagacctaaattttcaaca 5979156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 65 - 189
Target Start/End: Complemental strand, 22742033 - 22741899
Alignment:
Q  65 ataaatcaaacatgtcgtagatccgatcataat---gttcaatgttttgtttgctttcgctatgg-------attcataattgttgaatatgttttatga 154  Q
    |||||||||||||||||||||||||||||||||   ||||||||||  |||||||| |||||| |       |||||||||||||||| |||||||||||    
T  22742033 ataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttcagtttgcttccgctattgttgattcattcataattgttgaacatgttttatga 22741934  T
Q  155 aatttgtttttattaaaacctaaatttccaacaac 189  Q
    ||  |||| ||||| | ||||||||||||||||||    
T  22741933 aacctgttcttattgagacctaaatttccaacaac 22741899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 26383610 - 26383772
Alignment:
Q  1 ttgttgagaggactgttatcaaagcttcatcctgatattcctaatactctaattatta---tcctttataaatcaaacatgtcgtagatccgatc---at 94  Q
    ||||||||||| |||  ||||||||||||||  | |||||||||||| |||||| |||   | ||| ||||||||||||||||||||||||||||   ||    
T  26383610 ttgttgagagggctgccatcaaagcttcatcaaggtattcctaataccctaattcttagtatgcttgataaatcaaacatgtcgtagatccgatcatgat 26383709  T
Q  95 aatgttcaatgttttgtttgctttcgctatggattcataattgttgaatatgttttatgaaat 157  Q
     ||||||||| ||||||||| ||  | | | ||||||||||||||||| |||| |||||||||    
T  26383710 catgttcaatattttgtttgtttctgttgttgattcataattgttgaacatgtcttatgaaat 26383772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 21 - 147
Target Start/End: Complemental strand, 30219401 - 30219269
Alignment:
Q  21 aaagcttcatcctgatattcctaatactctaattatta---tcctttataaatcaaacatgtcgtagatccgatcata---atgttcaatgttttgtttg 114  Q
    ||||||| |||| ||||||||||||||  ||||| |||   || || ||||||||||||||||||||||||| |||||   |||||||| ||||||||||    
T  30219401 aaagctttatccagatattcctaataccataattcttaatatctttaataaatcaaacatgtcgtagatccgttcatattcatgttcaacgttttgtttg 30219302  T
Q  115 ctttcgctatggattcataattgttgaatatgt 147  Q
     || |||||  ||||||||||| ||||| ||||    
T  30219301 attccgctaatgattcataattattgaacatgt 30219269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 58
Target Start/End: Original strand, 3678016 - 3678071
Alignment:
Q  2 tgttgagaggactgttatcaaagcttcatcctgatattcctaatactctaattatta 58  Q
    ||||||||||| ||  |||||| ||||||||||||||||||||||| ||||||||||    
T  3678016 tgttgagaggattgccatcaaaacttcatcctgatattcctaatac-ctaattatta 3678071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 117
Target Start/End: Complemental strand, 18666602 - 18666549
Alignment:
Q  66 taaatcaaacatgtcgtagatccgatcataat---gttcaatgttttgtttgctt 117  Q
    |||||||||||||||||| ||| |||||||||   ||||||||||||||||||||    
T  18666602 taaatcaaacatgtcgta-atctgatcataatcaagttcaatgttttgtttgctt 18666549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 100; Significance: 1e-49; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 57 - 223
Target Start/End: Complemental strand, 8662897 - 8662729
Alignment:
Q  57 tatcctttataaatcaaacatgtcgtagatccgatcataat---gttcaatgttttgtttgctttcgctatggattcataattgttgaatatgttttatg 153  Q
    ||||||| |||||||||||||||||||||||||||||||||   |||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||    
T  8662897 tatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctattgattcataattgttgaacatgttttatg 8662798  T
Q  154 aaatttgtttttattaaaacctaaatttccaacaacggggtatcaaagcggtcttcatgtttgatttatt 223  Q
    |||| ||||| |||||| | |||||||| |||||| | ||||||| ||||||||| ||||||||||||||    
T  8662797 aaatctgtttatattaagagctaaatttacaacaa-gtggtatcagagcggtctttatgtttgatttatt 8662729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 57 - 223
Target Start/End: Complemental strand, 21197137 - 21196969
Alignment:
Q  57 tatcctttataaatcaaacatgtcgtagatccgatcata---atgttcaatgttttgtttgctttcgctatggattcataattgttgaatatgttttatg 153  Q
    ||||||| ||||||||||||||| ||||||||| |||||   |||||||||||||||||||||| |||||| |||||||||| |||||| ||||||||||    
T  21197137 tatccttgataaatcaaacatgttgtagatccgttcatacttatgttcaatgttttgtttgcttccgctattgattcataatcgttgaacatgttttatg 21197038  T
Q  154 aaatttgtttttattaaaacctaaatttccaacaacggggtatcaaagcggtcttcatgtttgatttatt 223  Q
    |||| |||||||| ||  ||||||||||||||||| | ||||||| ||||||||| ||||||||||||||    
T  21197037 aaatctgtttttactatgacctaaatttccaacaa-gtggtatcagagcggtctttatgtttgatttatt 21196969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 21 - 188
Target Start/End: Complemental strand, 8650958 - 8650785
Alignment:
Q  21 aaagcttcatcctgatattcctaatactctaattatta---tcctttataaatcaaacatgtcgtagatccgatcataat---gttcaatgttttgtttg 114  Q
    ||||||| |||| | |||||||||||| |||||| |||   ||||| |||||||||||||||||||||||||||||||||   |||||||||||||||||    
T  8650958 aaagctttatccaggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttg 8650859  T
Q  115 ctttcgctatggattcataattgttgaatatgttttatgaaatttgtttttattaaaacctaaatttccaacaa 188  Q
    ||| |||||| ||||||||||||||||| |||||||||||||| ||||| |||||| | |||||||| ||||||    
T  8650858 cttccgctattgattcataattgttgaacatgttttatgaaatctgtttatattaagagctaaatttacaacaa 8650785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 36 - 187
Target Start/End: Complemental strand, 32035426 - 32035269
Alignment:
Q  36 tattcctaatactctaattattat---cctttataaatcaaacatgtcgtagatccgatcataat---gttcaatgttttgtttgctttcgctatggatt 129  Q
    |||||||||||| |||||| |||    |||| |||||||||||||||||||||||||||||||||   |||||||||||||||||||| |||||| ||||    
T  32035426 tattcctaataccctaattcttaataaccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctattgatt 32035327  T
Q  130 cataattgttgaatatgttttatgaaatttgtttttattaaaacctaaatttccaaca 187  Q
    ||||||||||||| |||||||||||||| ||||| |||||| ||||||||||||||||    
T  32035326 cataattgttgaacatgttttatgaaatctgtttatattaagacctaaatttccaaca 32035269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 21 - 188
Target Start/End: Complemental strand, 21782908 - 21782735
Alignment:
Q  21 aaagcttcatcctgatattcctaatactctaattatta---tcctttataaatcaaacatgtcgtagatccgatcataat---gttcaatgttttgtttg 114  Q
    ||||||| |||| | |||||||||||| |||||| |||   ||||| |||||||||||||||||||||||||||||||||   |||||||||||||||||    
T  21782908 aaagctttatccagctattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttg 21782809  T
Q  115 ctttcgctatggattcataattgttgaatatgttttatgaaatttgtttttattaaaacctaaatttccaacaa 188  Q
    ||| |||||| |||| |||||||||||| |||| ||||||||| ||||| |||||| ||||||||||| |||||    
T  21782808 cttccgctattgatttataattgttgaacatgtattatgaaatctgtttatattaagacctaaatttctaacaa 21782735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 21 - 187
Target Start/End: Complemental strand, 4580476 - 4580304
Alignment:
Q  21 aaagcttcatcctgatattcctaatactctaattatta---tcctttataaatcaaacatgtcgtagatccgatcataat---gttcaatgttttgtttg 114  Q
    ||||||| |||| | |||||||||||| |||||| |||   |||||  ||||||||||||||||||||||||||||||||   |||||||||||||||||    
T  4580476 aaagctttatccaggtattcctaataccctaattcttaatatccttggtaaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttg 4580377  T
Q  115 ctttcgctatggattcataattgttgaatatgttttatgaaatttgtttttattaaaacctaaatttccaaca 187  Q
    ||| |||||| |||||||| |||||||| |||| ||||||||| ||||| |||||| ||||||||||||||||    
T  4580376 cttccgctattgattcatagttgttgaacatgtattatgaaatctgtttatattaagacctaaatttccaaca 4580304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 2 - 187
Target Start/End: Complemental strand, 31756389 - 31756196
Alignment:
Q  2 tgttgagaggactgttatcaaagcttcatcctgatattcctaatactctaattatta---tcctttataaatcaaacatgtcgtagatccgatcataat- 97  Q
    |||||||||| |||| || ||||||  |||| ||||||| |||||| |||||| |||   ||||| |||| |||||||||||||||||||||| |||||     
T  31756389 tgttgagagggctgtcatgaaagctctatccagatattcataataccctaattcttaatatccttgataattcaaacatgtcgtagatccgattataatc 31756290  T
Q  98 --gttcaatgttttgtttgctttcgctatggattcataattgttgaatatgttttatgaaatttg--tttttattaaaacctaaatttccaaca 187  Q
      |||||||||||| ||||||| || | | ||||||||||||||||| |||||||||||||| ||  |||||||||| ||||||||||||||||    
T  31756289 atgttcaatgttttatttgcttccgttgttgattcataattgttgaacatgttttatgaaatctgtttttttattaagacctaaatttccaaca 31756196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 21 - 187
Target Start/End: Complemental strand, 21191021 - 21190849
Alignment:
Q  21 aaagcttcatcctgatattcctaatactctaattatta---tcctttataaatcaaacatgtcgtagatccgatcataat---gttcaatgttttgtttg 114  Q
    ||||||| |||| | |||| ||||||| |||||| |||   || || |||||||||| || |||||||||||||||||||   |||||||||||||||||    
T  21191021 aaagctttatccaggtatttctaataccctaattcttaatatctttgataaatcaaatatatcgtagatccgatcataatcatgttcaatgttttgtttg 21190922  T
Q  115 ctttcgctatggattcataattgttgaatatgttttatgaaatttgtttttattaaaacctaaatttccaaca 187  Q
    ||| |||||| ||||||||||||||||| || ||||||||||| ||||| || ||| ||||||||||||||||    
T  21190921 cttccgctattgattcataattgttgaacatattttatgaaatctgtttataataagacctaaatttccaaca 21190849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 65 - 188
Target Start/End: Original strand, 18778634 - 18778761
Alignment:
Q  65 ataaatcaaacatgtcgtagatccgatcataat---gttcaatgttttgtttgctttcgctatggattcataattgttgaatatg-ttttatgaaatttg 160  Q
    |||||||||| | ||||||||||||||||||||   |||||| ||||||||||||| |||||| ||||||||||| ||||| ||| ||||||||||||||    
T  18778634 ataaatcaaatacgtcgtagatccgatcataattatgttcaacgttttgtttgcttccgctattgattcataattattgaacatgtttttatgaaatttg 18778733  T
Q  161 tttttattaaaacctaaatttccaacaa 188  Q
    |||| ||||| |||||||||||||||||    
T  18778734 ttttaattaagacctaaatttccaacaa 18778761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 17581619 - 17581797
Alignment:
Q  1 ttgttgagaggactgttatcaaagcttcatcctgatattcctaatactctaattattatcctttataaatcaaacatgtcgtagatccgatcataat--- 97  Q
    ||||||||||| |||| || ||||||| |||| | |||||||||||| ||||||      |||  ||||||||||||||||||||||| || |||||       
T  17581619 ttgttgagagggctgtcatgaaagctttatccaggtattcctaataccctaatt------cttggtaaatcaaacatgtcgtagatcctataataatcat 17581712  T
Q  98 gttcaatgttttgtttgctttcgctatggattcataattgttgaatatgttttatgaaatttgtttttattaaaacctaaatttc 182  Q
    |||||||||||||||||||| |||||| |||||||||| |||||| |||||||||||| | |||||||||| | | |||||||||    
T  17581713 gttcaatgttttgtttgcttccgctatcgattcataatagttgaacatgttttatgaattatgtttttatttagatctaaatttc 17581797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 36 - 223
Target Start/End: Original strand, 25343644 - 25343840
Alignment:
Q  36 tattcctaatactctaattattatc--ctttataaatcaaacatgtcgtagatccgatcata---atgttcaatgttttgtttgctttcgctatggattc 130  Q
    ||||||||||||||||||| |||    ||| |||||||||| ||||||||||||||||||||   ||||||||||||||||||||||  ||||| ||||     
T  25343644 tattcctaatactctaattcttaatatcttgataaatcaaaaatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttctgctattgattt 25343743  T
Q  131 ataattgttgaa----tatgttttatgaaatttgttttt-attaaaacctaaatttccaacaacggggtatcaaagcggtcttcatgtttgatttatt 223  Q
    |  |||||||||     |||| ||||||||||||||||| ||||| |  |||||||||||||| | ||||||| ||||||||||||||||||||||||    
T  25343744 acgattgttgaacatgcatgtattatgaaatttgtttttaattaagatataaatttccaacaa-gtggtatcagagcggtcttcatgtttgatttatt 25343840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 21 - 187
Target Start/End: Original strand, 25354216 - 25354388
Alignment:
Q  21 aaagcttcatcctgatattcctaatactctaattattatc--ctttataaatcaaacatgtcgtagatccgatcataat---gttcaatgttttgtttgc 115  Q
    ||||||| |||| | |||||||||||| |||||| |||    ||| |||||||||||||||||||||||||||||||||   |||||||| |||||||||    
T  25354216 aaagctttatccaggtattcctaataccctaattcttaatatcttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgctttgtttgc 25354315  T
Q  116 tttcgctatggattcataattgttgaatatgttttatgaaatttgttttt-attaaaacctaaatttccaaca 187  Q
    || |||||| |||| |  ||||||||| |||| ||||||||| ||||||| ||||| | ||||||||||||||    
T  25354316 ttccgctattgatttacgattgttgaacatgtattatgaaatctgtttttaattaagatctaaatttccaaca 25354388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 36 - 221
Target Start/End: Original strand, 6098000 - 6098191
Alignment:
Q  36 tattcctaatactctaattattatc--ctttataaatcaaacatgtcgtagatccgatcataatgttcaatgttttgtttgctttcgcta-tggattcat 132  Q
    |||||||||||| |||||| ||| |  ||| |||||||||||| |||||||||||| || | |||||||||||||||| | ||| ||||| | |||||||    
T  6098000 tattcctaataccctaattcttaacatcttgataaatcaaacacgtcgtagatccgttcttcatgttcaatgttttgtctacttccgctatttgattcat 6098099  T
Q  133 aa---ttgttgaatatgttttatgaaatttg-tttttattaaaacctaaatttccaacaacggggtatcaaagcggtcttcatgtttgattta 221  Q
    ||   |||||||| ||||||||||||||||| |||||||||| |||||| ||| |||||| | ||||| | |||  |||||||||||||||||    
T  6098100 aattgttgttgaacatgttttatgaaatttgttttttattaagacctaagttttcaacaa-gtggtatgagagcaatcttcatgtttgattta 6098191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 21770731 - 21770546
Alignment:
Q  1 ttgttgagaggactgttatcaaagcttcatcctgatattcctaatactctaattatt---atcctttataaatcaaacatgtcgtagatccgatcata-- 95  Q
    ||||||||||| |||  || ||||||| || | |||||||||||||||  |||| ||   |||||| ||||||||||||||||||||||||| |||||      
T  21770731 ttgttgagagggctgccataaaagctttattcagatattcctaatact--aattcttgatatccttgataaatcaaacatgtcgtagatccgttcatatt 21770634  T
Q  96 -atgttcaatgttttgtttgctttcgctatggattcataattgttgaatatgttttatgaaatttgttttt-attaaaacctaaattt 181  Q
     |||||||||||||||||| ||| | ||||  ||| |  ||||||||  |||| ||||||||| ||||||| ||||| ||||||||||    
T  21770633 tatgttcaatgttttgtttacttcctctattaatttacgattgttgatcatgtattatgaaatctgtttttaattaagacctaaattt 21770546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 57 - 142
Target Start/End: Complemental strand, 21783425 - 21783337
Alignment:
Q  57 tatcctttataaatcaaacatgtcgtagatccgatcata---atgttcaatgttttgtttgctttcgctatggattcataattgttgaa 142  Q
    ||||||| ||||||||||||||||||||||||| |||||   |||||||||||||||||||||| |||||| |||| |  |||||||||    
T  21783425 tatccttgataaatcaaacatgtcgtagatccgttcatatttatgttcaatgttttgtttgcttccgctattgatttactattgttgaa 21783337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 57 - 142
Target Start/End: Complemental strand, 21789648 - 21789560
Alignment:
Q  57 tatcctttataaatcaaacatgtcgtagatccgatcata---atgttcaatgttttgtttgctttcgctatggattcataattgttgaa 142  Q
    ||||||| ||||||||||||||||||||||||| |||||   |||||||||||||||||||||| |||||| |||| |  |||||||||    
T  21789648 tatccttgataaatcaaacatgtcgtagatccgttcatatttatgttcaatgttttgtttgcttccgctattgatttactattgttgaa 21789560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 57 - 164
Target Start/End: Complemental strand, 34603446 - 34603337
Alignment:
Q  57 tatcctttataaatcaaacatgtcgtagatccgatcata---atgttcaatgttttgtttgctttcgctatggattcataattgttgaatatgttttatg 153  Q
    ||||||| |||||||||||||| | ||||||||||||||   |||||||||| ||||||||| ||||||||  |||||||||||||  | |||||||||     
T  34603446 tatccttgataaatcaaacatgccatagatccgatcataattatgttcaatgctttgtttgc-ttcgctatttattcataattgttacacatgttttatt 34603348  T
Q  154 aaatttgtttt 164  Q
    |||| ||||||    
T  34603347 aaatatgtttt 34603337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 57 - 164
Target Start/End: Complemental strand, 34724723 - 34724614
Alignment:
Q  57 tatcctttataaatcaaacatgtcgtagatccgatcata---atgttcaatgttttgtttgctttcgctatggattcataattgttgaatatgttttatg 153  Q
    ||||||| |||||||||||||| | ||||||||||||||   |||||||||| ||||||||| ||||||||  |||||||||||||  | |||||||||     
T  34724723 tatccttgataaatcaaacatgccatagatccgatcataattatgttcaatgctttgtttgc-ttcgctatttattcataattgttacacatgttttatt 34724625  T
Q  154 aaatttgtttt 164  Q
    |||| ||||||    
T  34724624 aaatatgtttt 34724614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 186
Target Start/End: Original strand, 6102708 - 6102803
Alignment:
Q  96 atgttcaatgttttgtttgctttcgcta-tggattcataa---ttgttgaatatgttttatgaaatttg-tttttattaaaacctaaatttccaac 186  Q
    |||||||||||||||| ||||| ||||| | ||||||| |   |||||||| || ||||||||||| || ||||||| || |||||||||||||||    
T  6102708 atgttcaatgttttgtctgcttccgctatttgattcatgattgttgttgaacatattttatgaaatatgttttttatgaagacctaaatttccaac 6102803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 57 - 223
Target Start/End: Complemental strand, 173006 - 172838
Alignment:
Q  57 tatcctttataaatcaaacatgtcgtagatccgatcataatg---ttcaatgttttgtttgctttcgctatggattcataattgttgaatatgttttatg 153  Q
    ||||||| |||||| ||||||||||||||||||||||||||    ||||||||||||||||||| |||||| ||||||||||||| ||| ||||||||||    
T  173006 tatccttgataaattaaacatgtcgtagatccgatcataatcattttcaatgttttgtttgcttccgctattgattcataattgtagaacatgttttatg 172907  T
Q  154 aaatttgtttttattaaaacctaaatttccaacaacggggtatcaaagcggtcttcatgtttgatttatt 223  Q
    |||  ||||| |||||| |||||||||| |||||| |  |||||| ||||||||||||||||||||||||    
T  172906 aaacctgtttatattaagacctaaattttcaacaa-gtagtatcagagcggtcttcatgtttgatttatt 172838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0236 (Bit Score: 87; Significance: 8e-42; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 21 - 189
Target Start/End: Original strand, 5539 - 5713
Alignment:
Q  21 aaagcttcatcctgatattcctaatactctaattatta---tcctttataaatcaaacatgtcgtagatccgatcataat---gttcaatgttttgtttg 114  Q
    ||||||| |||| | |||||||||||  |||||| |||   ||||| |||||||||||||||||||||||||||||||||   |||||||||||||||||    
T  5539 aaagctttatccaggtattcctaatagcctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttg 5638  T
Q  115 ctttcgctatggattcataattgttgaatatgttttatgaaatttgtttttattaaaacctaaatttccaacaac 189  Q
    ||| |||||| ||||||||||||||||| |||||||||||||| ||||| ||| || | ||||||||||||||||    
T  5639 cttccgctattgattcataattgttgaacatgttttatgaaatctgtttatatcaagagctaaatttccaacaac 5713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0363 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: scaffold0363
Description:

Target: scaffold0363; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 7 - 187
Target Start/End: Complemental strand, 788 - 605
Alignment:
Q  7 agaggactgttatcaaagcttcatcctgatattcctaatactctaattatta---tcctttataaatcaaacatgtcgtagatccgatcata---atgtt 100  Q
    ||||| ||| ||| ||||||| |||| | |||||||||||| |||||| |||   ||||| |||||||||||||||||||||||||||||||   |||||    
T  788 agagggctgctatgaaagctttatccaggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgtt 689  T
Q  101 caatgttttgtttgctttcgctatggattcataattgttgaatatgttttatgaaatttgtttttattaaaacctaaatttccaaca 187  Q
    ||||||||||||||||| |||||| ||||||||   ||| || |||||||||||||| |||||||||||| ||||||||||||||||    
T  688 caatgttttgtttgcttccgctattgattcata---gttaaacatgttttatgaaatctgtttttattaagacctaaatttccaaca 605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0440 (Bit Score: 82; Significance: 7e-39; HSPs: 1)
Name: scaffold0440
Description:

Target: scaffold0440; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 21 - 187
Target Start/End: Complemental strand, 1349 - 1176
Alignment:
Q  21 aaagcttcatcctgatattcctaatactctaattatta---tcctttataaatcaaacatgtcgtagatccgatcataat---gttcaatgttttgtttg 114  Q
    ||||||| |||| | |||||||||||| |||||| |||   ||||| ||||||||||||| |||||||||||||||||||   |||||||||||||||||    
T  1349 aaagctttatccaggtattcctaataccctaattcttaatatccttgataaatcaaacatatcgtagatccgatcataatcatgttcaatgttttgtttg 1250  T
Q  115 ctttcgctatggattcataattgttgaatatgttttatgaaatttgttttt-attaaaacctaaatttccaaca 187  Q
    ||| |||  | ||||||||||||||||| |||||||||||||| ||||||| ||||| ||||||||||||||||    
T  1249 cttccgcctttgattcataattgttgaacatgttttatgaaatctgtttttaattaagacctaaatttccaaca 1176  T

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Target: scaffold0208 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: scaffold0208
Description:

Target: scaffold0208; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 21 - 188
Target Start/End: Original strand, 12400 - 12573
Alignment:
Q  21 aaagcttcatcctgatattcctaatactctaattatta---tcctttataaatcaaacatgtcgtagatccgatcata---atgttcaatgttttgtttg 114  Q
    ||||||| |||| |||||||||||||  |||||| |||   ||||| |||||||||||||||||||||| ||||||||   |||||||||||||| ||||    
T  12400 aaagctttatccagatattcctaatagcctaattcttaatatccttgataaatcaaacatgtcgtagattcgatcataattatgttcaatgttttatttg 12499  T
Q  115 ctttcgctatggattcat-aattgttgaatatgttttatgaaatttgtttttattaaaacctaaatttccaacaa 188  Q
    ||| |||||| ||||||| |||||||||||||| ||||||||| |||||| |||||| | |||||||||||||||    
T  12500 cttccgctattgattcataaattgttgaatatggtttatgaaa-ttgtttatattaagagctaaatttccaacaa 12573  T

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Target: scaffold0208; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 21 - 223
Target Start/End: Original strand, 6527 - 6734
Alignment:
Q  21 aaagcttcatcctgatattcctaatactctaattatta---tcctttataaatcaaacatgtcgtagatccgatcataat---gttcaatgttttgtttg 114  Q
    ||||||| |||| | |||||||||||  |||||| |||   ||||| ||||||||||||||| |||||| |  |||||||   |||||||||||||||||    
T  6527 aaagctttatccaggtattcctaatagcctaattcttaatatccttgataaatcaaacatgttgtagattcagtcataatcatgttcaatgttttgtttg 6626  T
Q  115 ctttcgctatggattcat-aattgttgaatatgttttatgaaatttgtttttattaaaacctaaatttccaacaacggggtatcaaagcggtcttcatgt 213  Q
    ||| |||||| ||||||| |||||||||| ||| ||||||||| |||||| |||||| | ||||||||||||||| | ||||||| ||| ||||||||||    
T  6627 cttccgctattgattcataaattgttgaacatggtttatgaaa-ttgtttatattaagagctaaatttccaacaa-gtggtatcagagccgtcttcatgt 6724  T
Q  214 ttgatttatt 223  Q
    ||||||||||    
T  6725 ttgatttatt 6734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 38414 - 38600
Alignment:
Q  1 ttgttgagaggactgttatcaaagcttcatcctgatattcctaatactctaattat---tatcctttataaatcaaacatgtcgtagatccgatcata-- 95  Q
    ||||||||| || |||  |||||||||||||| | |||||||||||| ||||||||   ||| ||| ||||| ||||||||| |||||||||||||||      
T  38414 ttgttgagatgattgtcgtcaaagcttcatccaggtattcctaatac-ctaattattaatattcttgataaa-caaacatgttgtagatccgatcataac 38511  T
Q  96 -atgttcaatgttttgtttgctttcgctatggattcataattgttgaatatgttttatgaaatttgtttttattaaaacctaaatttcc 183  Q
     |||||||||||||||||||||| | || | ||||  ||||  ||||| |||| ||||||||| || ||||||| || |||||||||||    
T  38512 tatgttcaatgttttgtttgcttccactgttgatttctaatgattgaacatgtcttatgaaatctggttttatttaatcctaaatttcc 38600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1114 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold1114
Description:

Target: scaffold1114; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 29 - 187
Target Start/End: Original strand, 1100 - 1261
Alignment:
Q  29 atcctgatattcctaatactctaattatta---tcctttataaatcaaacatgtcgtagatccgatcataatgttcaatgttttgtttgctttcgctatg 125  Q
    |||| |||||| |||||||||||||| |||   | | | |||| ||||||||||||| ||||||||||||||  |   |   ||||||||||||| |||     
T  1100 atccagatatttctaatactctaattgttaatatgcatgataagtcaaacatgtcgttgatccgatcataatcatatctaaattgtttgctttcgatatt 1199  T
Q  126 gattcataattgttgaatatgttttatgaaatttgtttttattaaaacctaaatttccaaca 187  Q
    |||||||||| |||||| |||||||||||||| |||||||||||| | || |||||||||||    
T  1200 gattcataatggttgaacatgttttatgaaatctgtttttattaagatctgaatttccaaca 1261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0185 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0185
Description:

Target: scaffold0185; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 65 - 149
Target Start/End: Original strand, 5974 - 6061
Alignment:
Q  65 ataaatcaaacatgtcgtagatccgatcata---atgttcaatgttttgtttgctttcgctatggattcataattgttgaatatgttt 149  Q
    |||||||||||||||||||||||||||||||   ||||||||||||||||||  |  |||||| |||| |||||| ||||| ||||||    
T  5974 ataaatcaaacatgtcgtagatccgatcatattcatgttcaatgttttgtttaatgccgctattgattaataattattgaacatgttt 6061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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