View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14573_high_2 (Length: 467)

Name: NF14573_high_2
Description: NF14573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14573_high_2
NF14573_high_2
[»] chr1 (1 HSPs)
chr1 (4-467)||(4871730-4872196)


Alignment Details
Target: chr1 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 4 - 467
Target Start/End: Original strand, 4871730 - 4872196
Alignment:
Q  4 gcaacatgggctcatctttgtgttgaatttcaagttagggcagatattatttttcttttacagaactagggttcatcttctttctcactatcacgaa--- 100  Q
    |||||| ||| || ||||||||||||||||||||||||||||||| |||||||| |||| |||||||||||||||||||||||||||||||||||||       
T  4871730 gcaacaagggttcctctttgtgttgaatttcaagttagggcagattttatttttgtttttcagaactagggttcatcttctttctcactatcacgaatta 4871829  T
Q  101 gcaacaatgctctcactgttaagaagaagatgtgttggtggtgttagtgctgtttcttctattattactatttccaaaaacaacaagaagttgtttcctc 200  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||    
T  4871830 gcaacaatgctctcaatgttaagaagaagatgtgttggtggtgttagtgctgtttcttctattattactatttccaaaaacaccaacaagttgtttcctc 4871929  T
Q  201 gtcacccttatacttgtgatccattcatagacatgcctcctcttcctcgtcctccttgttactataaatgggtgaaggaaacaatagcttatatcaattc 300  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4871930 gtcgcccttatacttgtgatccattcatagacatgcctcctcttcctcgtcctccttgttactataaatgggtgaaggaaacaatagcttatatcaattc 4872029  T
Q  301 tgctactcgtgatttcgatgacatgctctctcgcggttactctaccatatccgattatatcgctcttttttcttcccttcttaatatccatcaacacagc 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  4872030 tgctactcgtgatttcgatgacatgctctctcgcggttactctaccatatccgattataacgctcttttttcttcccttcttaatatccatcaacacagc 4872129  T
Q  401 actgttcttagacttgctaaacaatttgaatcgcaaaaccctaaccttcatcctgttacaccggaca 467  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  4872130 actgttcttagacttgctaaacaatttgaatcgcaagaccctaaccttcatcctgttacaccggaca 4872196  T

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