View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14573_high_5 (Length: 393)
Name: NF14573_high_5
Description: NF14573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14573_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 18 - 369
Target Start/End: Original strand, 40945109 - 40945460
Alignment:
| Q |
18 |
atagcaaatccaccaccaccatatgccatagcatatgaaaaatgaatattctggacatggctctcagaagaactaccaacataataaaaatgtctatggt |
117 |
Q |
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| T |
40945109 |
atagcaaatccaccaccaccatatgccatagcatatgaaaaatgaatattctggacatgactctcagaagaactaccaacataataaaaatgtctatggt |
40945208 |
T |
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| Q |
118 |
catactttgaaagaattctaacaacattatcaacaacaaaaacagtatcatcatctcccatcacaaaccatcttacatctttcaatccaagcttcaatgt |
217 |
Q |
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| T |
40945209 |
catactttgaaagaattctaacaacattatcaacaacaaaaacagtatcatcatctcccatcacaaaccatcttacatctttcaatccaagcttcaatgt |
40945308 |
T |
|
| Q |
218 |
ctctgtcacaacccttgatatcctcaatgctgacctttgtccttgtcgatttgtataccgaaatttagaagtgtcacctgagattcgaatatcaggtaac |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
40945309 |
ctctgtcacaacccttgatatcctcaatgctgacctttgtccctgtcgatttgtataccgaaatttagaagtgtcatctgagattcgaatatcaggtaac |
40945408 |
T |
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| Q |
318 |
ccttcgttcctttctgtactcactcttaaatctacccaaacaacccctcttg |
369 |
Q |
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| T |
40945409 |
ccttcgttcctttgtgtactcactctttgatctaaccaaacaacacctcttg |
40945460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 107; Significance: 2e-53; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 18 - 316
Target Start/End: Original strand, 22776495 - 22776793
Alignment:
| Q |
18 |
atagcaaatccaccaccaccatatgccatagcatatgaaaaatgaatattctggacatggctctcagaagaactaccaacataataaaaatgtctatggt |
117 |
Q |
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| T |
22776495 |
atagcaaatcctccaccaccataagccatagcatacgagaaatgtatgttctgaacatgactctcagaggagcttccaacataataaaattgagtatgat |
22776594 |
T |
|
| Q |
118 |
catactttgaaagaattctaacaacattatcaacaacaaaaacagtatcatcatctcccatcacaaaccatcttacatctttcaatccaagcttcaatgt |
217 |
Q |
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|||| |||||||||| |||||| ||||||||||| | ||| |||||||||||||||||||||| |||||||| ||||| | ||| ||||| |||||||| |
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| T |
22776595 |
catattttgaaagaactctaaccacattatcaaccataaacacagtatcatcatctcccatcatgaaccatctcacatcctccaacccaagtttcaatgt |
22776694 |
T |
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| Q |
218 |
ctctgtcacaacccttgatatcctcaatgctgacctttgtccttgtcgatttgtataccgaaatttagaagtgtcacctgagattcgaatatcaggtaa |
316 |
Q |
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| T |
22776695 |
ctctgtcacaatccttgaaatccttaaagcagatctctgtccctgacgattcgtatacttaaatctactagtgtcccccgaaatttgaatatctggtaa |
22776793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 18 - 208
Target Start/End: Complemental strand, 11092106 - 11091916
Alignment:
| Q |
18 |
atagcaaatccaccaccaccatatgccatagcatatgaaaaatgaatattctggacatggctctcagaagaactaccaacataataaaaatgtctatggt |
117 |
Q |
| |
|
||||||||||||||||||||||| |||||| ||| ||||||| ||||||||| | ||| ||||| ||| |||||||| |||||||| || |||| | |
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| T |
11092106 |
atagcaaatccaccaccaccataagccatattataagaaaaataaatattctgcaaatgactctctgaattactaccaatgtaataaaattgattatgat |
11092007 |
T |
|
| Q |
118 |
catactttgaaagaattctaacaacattatcaacaacaaaaacagtatcatcatctcccatcacaaaccatcttacatctttcaatccaag |
208 |
Q |
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|||| || | || |||| | ||| ||| ||||||||| ||||||||||| |||||||||||||| || |||| || || |||||| |
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| T |
11092006 |
catatttcttcaaaacattaaccaaattctcagcaacaaaaaatgtatcatcatcacccatcacaaaccacctcacattttccattccaag |
11091916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 41319837 - 41319877
Alignment:
| Q |
18 |
atagcaaatccaccaccaccatatgccatagcatatgaaaa |
58 |
Q |
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| T |
41319837 |
atagcaaatccaccaccaccataagccataccataggaaaa |
41319877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 124
Target Start/End: Complemental strand, 2619394 - 2619287
Alignment:
| Q |
17 |
aatagcaaatccaccaccaccatatgccatagcatatgaaaaatgaatattctggacatggctctcagaagaactaccaacataataaaaatgtctatgg |
116 |
Q |
| |
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|||||||||||||||||||||||| |||||| |||| ||||||| |||||||| | ||| ||||| || |||| |||| ||| ||||| || |||| |
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| T |
2619394 |
aatagcaaatccaccaccaccataagccataccataagaaaaatatatattctgcaaatgactctctgataaactcccaatatagtaaaactgcttatga |
2619295 |
T |
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| Q |
117 |
tcatactt |
124 |
Q |
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|||||||| |
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| T |
2619294 |
tcatactt |
2619287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 29613111 - 29613164
Alignment:
| Q |
17 |
aatagcaaatccaccaccaccatatgccatagcatatgaaaaatgaatattctg |
70 |
Q |
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|||||||||||||||||||||||| |||||| ||| ||||||| ||||||||| |
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| T |
29613111 |
aatagcaaatccaccaccaccataagccatattataagaaaaattaatattctg |
29613164 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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