View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14573_high_9 (Length: 274)
Name: NF14573_high_9
Description: NF14573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14573_high_9 |
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Alignment Details
Target: chr6 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 15 - 261
Target Start/End: Complemental strand, 7958009 - 7957763
Alignment:
| Q |
15 |
atttatcgatattttttattattaggtggagcatgttccgacagaaatcacattattcccctgatgttaagtaggtacgtttctttttcatttaatagac |
114 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |
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| T |
7958009 |
atttatcgatattttttattaataggtggagcatgttccgacagaaatcacattattcccttgatgttaagtaggtacgtttctttttcatttaattgac |
7957910 |
T |
|
| Q |
115 |
aagaagctagtgtggatatatgttagcaaagataacatttttgtattgggtaaaagccactaatttgaaatatagcatatatgttgagtaagcttatgaa |
214 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
7957909 |
aagaagctagtgtggatatatgttggcaaagataacatttttgtattgggtaaaagccactaattagaaatatagcatatatgttgagtaagcttatgaa |
7957810 |
T |
|
| Q |
215 |
atcttcataaggttttgtgtctaaacacaactatgatatgacattta |
261 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7957809 |
atcttcataaggttttgtgtctaaacacaactatgatatgacattta |
7957763 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 12 - 261
Target Start/End: Original strand, 3804583 - 3804832
Alignment:
| Q |
12 |
atgatttatcgatattttttattattaggtggagcatgttccgacagaaatcacattattcccctgatgttaagtaggtacgtttctttttcatttaata |
111 |
Q |
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|||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
3804583 |
atgatttatcgatattttttatgaataggtggagcatgtttcgacagaaatcacattattcccttgatgttaagtaggtacgtttctttttcatttaatt |
3804682 |
T |
|
| Q |
112 |
gacaagaagctagtgtggatatatgttagcaaagataacatttttgtattgggtaaaagccactaatttgaaatatagcatatatgttgagtaagcttat |
211 |
Q |
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| T |
3804683 |
gacaagaagctagtgtgaatatatgttggcaaagatagcatttttgtattgggtaaaagccactaatcagaaatatagcatatatgttgagtaagcttat |
3804782 |
T |
|
| Q |
212 |
gaaatcttcataaggttttgtgtctaaacacaactatgatatgacattta |
261 |
Q |
| |
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| |||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
3804783 |
ggaatcttcataaggttttgtgtctaaacataactatgatatgacattta |
3804832 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 109; Significance: 7e-55; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 125 - 261
Target Start/End: Complemental strand, 7444650 - 7444514
Alignment:
| Q |
125 |
tgtggatatatgttagcaaagataacatttttgtattgggtaaaagccactaatttgaaatatagcatatatgttgagtaagcttatgaaatcttcataa |
224 |
Q |
| |
|
|||||||||||||| | ||||||| |||||||| ||||||||||||||||| ||||||||||||| |||||||||||||||||||||| ||||||||||| |
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| T |
7444650 |
tgtggatatatgttggtaaagatagcatttttgaattgggtaaaagccactgatttgaaatatagtatatatgttgagtaagcttatggaatcttcataa |
7444551 |
T |
|
| Q |
225 |
ggttttgtgtctaaacacaactatgatatgacattta |
261 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |
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| T |
7444550 |
ggttttgtgtctaaacacaactatgatatgacattta |
7444514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 12 - 131
Target Start/End: Complemental strand, 7444945 - 7444826
Alignment:
| Q |
12 |
atgatttatcgatattttttattattaggtggagcatgttccgacagaaatcacattattcccctgatgttaagtaggtacgtttctttttcatttaata |
111 |
Q |
| |
|
||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| ||| |
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| T |
7444945 |
atgatttattgatattttttattaataggtggagcaggttccgacagaaatcacattattcccttgatgttaagtaggtacttttctttttcattaaatt |
7444846 |
T |
|
| Q |
112 |
gacaagaagctagtgtggat |
131 |
Q |
| |
|
||||| |||||| ||||||| |
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|
| T |
7444845 |
gacaataagctattgtggat |
7444826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 207 - 261
Target Start/End: Complemental strand, 45175360 - 45175306
Alignment:
| Q |
207 |
cttatgaaatcttcataaggttttgtgtctaaacacaactatgatatgacattta |
261 |
Q |
| |
|
|||||| |||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45175360 |
cttatggaatctttgtaaggttttgtgtctaaacacaactatgatatgacattta |
45175306 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 109; Significance: 7e-55; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 129 - 261
Target Start/End: Original strand, 49377741 - 49377873
Alignment:
| Q |
129 |
gatatatgttagcaaagataacatttttgtattgggtaaaagccactaatttgaaatatagcatatatgttgagtaagcttatgaaatcttcataaggtt |
228 |
Q |
| |
|
|||||||||| | ||||||| |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
49377741 |
gatatatgttggtaaagatagcatttttgtattgggtaaaagccactgattagaaatatagcatatatgttgagtaagcttatggaatcttcataaggtt |
49377840 |
T |
|
| Q |
229 |
ttgtgtctaaacacaactatgatatgacattta |
261 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
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|
| T |
49377841 |
ttgtgtctaaacacaactatgatatgacattta |
49377873 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 12 - 131
Target Start/End: Original strand, 49377397 - 49377516
Alignment:
| Q |
12 |
atgatttatcgatattttttattattaggtggagcatgttccgacagaaatcacattattcccctgatgttaagtaggtacgtttctttttcatttaata |
111 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |
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| T |
49377397 |
atgatttatcgatattttttattaataggtggagcaggttccgacagaaatcacattattcccttgatgttaagtaggtacgtttctttttcattaaatt |
49377496 |
T |
|
| Q |
112 |
gacaagaagctagtgtggat |
131 |
Q |
| |
|
|||||||||||| ||||||| |
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| T |
49377497 |
gacaagaagctattgtggat |
49377516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 92; Significance: 9e-45; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 158 - 261
Target Start/End: Complemental strand, 39134584 - 39134481
Alignment:
| Q |
158 |
tattgggtaaaagccactaatttgaaatatagcatatatgttgagtaagcttatgaaatcttcataaggttttgtgtctaaacacaactatgatatgaca |
257 |
Q |
| |
|
|||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39134584 |
tattgggtaaaagccactgattagaaatatagcatatatgttgagtaagcttatggaatcttcataaggttttgtgtctaaacacaactatgatatgaca |
39134485 |
T |
|
| Q |
258 |
ttta |
261 |
Q |
| |
|
|||| |
|
|
| T |
39134484 |
ttta |
39134481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 69
Target Start/End: Complemental strand, 39718472 - 39718415
Alignment:
| Q |
12 |
atgatttatcgatattttttattattaggtggagcatgttccgacagaaatcacatta |
69 |
Q |
| |
|
||||||||| ||||| |||||||| |||||||||| ||||||||| ||||||||||| |
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|
| T |
39718472 |
atgatttattgatatattttattaacaggtggagcaggttccgacataaatcacatta |
39718415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 125 - 261
Target Start/End: Complemental strand, 27633987 - 27633864
Alignment:
| Q |
125 |
tgtggatatatgttagcaaagataacatttttgtattgggtaaaagccactaatttgaaatatagcatatatgttgagtaagcttatgaaatcttcataa |
224 |
Q |
| |
|
|||||||||||||| | |||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| | ||| |
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| T |
27633987 |
tgtggatatatgtttgtaaagataacatttttgtattgggtaaaagccactgattagaaatatagcatatatgttgagtaagtt-------------taa |
27633901 |
T |
|
| Q |
225 |
ggttttgtgtctaaacacaactatgatatgacattta |
261 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27633900 |
ggttttgtgtctaaacacaactatgatatgacattta |
27633864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 37 - 131
Target Start/End: Complemental strand, 27634258 - 27634163
Alignment:
| Q |
37 |
taggtggagcatgttccgacagaaatcacattattcccctgatgttaagtaggtacg-tttctttttcatttaatagacaagaagctagtgtggat |
131 |
Q |
| |
|
||||||||||| |||| |||||||||||||||||||| ||||||||||||||| || ||| ||||| ||| ||| |||||||||||| ||||||| |
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| T |
27634258 |
taggtggagcaggttctaacagaaatcacattattcccttgatgttaagtaggtgcgtttttttttttattaaattgacaagaagctattgtggat |
27634163 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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