View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14573_low_1 (Length: 518)
Name: NF14573_low_1
Description: NF14573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14573_low_1 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 238; Significance: 1e-131; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 18 - 319
Target Start/End: Original strand, 22918022 - 22918332
Alignment:
| Q |
18 |
aaagaaacatttcatgataaattgcggaaaacttctttgtaaacaacatttgattgatgcaagccccttcatcgtctgttagaagtattttcagcccact |
117 |
Q |
| |
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||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22918022 |
aaagaaacatttcatgataaattgcggaagacttctttgtaaacaacatttaattgatgcaagccccttcatcgtctgttagaagtattttcagcccact |
22918121 |
T |
|
| Q |
118 |
cctagatgtaacacgtgaaatagcaataatctgatagtcaggaaaaatcgtgaaa-tagc--------aatattgctgatatcagtcagtggacttttcc |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | || | |||| |||||||||||||||||||||||| |
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| T |
22918122 |
cctagatgtaacacgtgaaatagcaataatctgatagtcaggaaaaatcatgaaagtggctgatgctgaccattgttgatatcagtcagtggacttttcc |
22918221 |
T |
|
| Q |
209 |
ctcatgaccttttcgtttcctacttggcttcatcttaattaattcgatatgcttgtatgttctgttgaaaacgttttgagttcatgaagaaatgtagaac |
308 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
22918222 |
ctcatgagcttttcgtttcctacttggcttcatcttaattaattcgatatgcttgtatgttctgttgaaaacattttgagttcatgaagaaatgtagaac |
22918321 |
T |
|
| Q |
309 |
ctgttatgaat |
319 |
Q |
| |
|
||||||||||| |
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|
| T |
22918322 |
ctgttatgaat |
22918332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 168; E-Value: 8e-90
Query Start/End: Original strand, 326 - 518
Target Start/End: Original strand, 22918537 - 22918731
Alignment:
| Q |
326 |
atattaagagtgtaagtttaaaaagacatgtaaagcaagatatttcaccacactaagttacataatttttatctcctataaaa--aatacattaatatat |
423 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
22918537 |
atattaagagtgtaagtttaaaaagatatgtaaagcaagatatttcaccacactaagttacataatttttatctcctataaaaaaaatacattaatatat |
22918636 |
T |
|
| Q |
424 |
aggtgttaggaataagttatagttatctcatataaagtgtgtcttcgtgggaaaaatattaaacaaattgatgatgatatatttttgtttctgtg |
518 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
22918637 |
aggtgataggaataagttatagttatctcatataaagtgtgtcttcatgggaaaaatattaaacaaactgatgatgatatatttttgtttctgtg |
22918731 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 127; Significance: 2e-65; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 22 - 172
Target Start/End: Original strand, 43787255 - 43787405
Alignment:
| Q |
22 |
aaacatttcatgataaattgcggaaaacttctttgtaaacaacatttgattgatgcaagccccttcatcgtctgttagaagtattttcagcccactccta |
121 |
Q |
| |
|
|||||||| |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
43787255 |
aaacattttatgataaattacggaagacttctttgtaaacaacatttgattgatgcaagccccttcatcgtctcttagaagtattttcagcccactccta |
43787354 |
T |
|
| Q |
122 |
gatgtaacacgtgaaatagcaataatctgatagtcaggaaaaatcgtgaaa |
172 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
43787355 |
gatgtaacatgtgaaatagcaataatctgatagtcaggaaaaatcatgaaa |
43787405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 417 - 509
Target Start/End: Original strand, 3522766 - 3522858
Alignment:
| Q |
417 |
aatatataggtgttaggaataagttatagttatctcatataaagtgtgtcttcgtgggaaaaatattaaacaaattgatgatgatatattttt |
509 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| ||||||||||||||||| ||||||| |||||||||||| |||||||||||| ||||| |
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| T |
3522766 |
aatatataggtgtgaggaataagttatagttatcttatataaagtgtgtcttcatgggaaacatattaaacaaactgatgatgatattttttt |
3522858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 24 - 143
Target Start/End: Complemental strand, 36155677 - 36155551
Alignment:
| Q |
24 |
acatttcatgataaattgcggaaaacttctttgtaaacaacatttga-------ttgatgcaagccccttcatcgtctgttagaagtattttcagcccac |
116 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||| ||||| || ||||||||||| || || |||||||| ||||||||||||||||||| |
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|
| T |
36155677 |
acatttcataataaattgcggaaaacttctttgtaaacgacattcgaagtagtgttgatgcaagcaccatcgtcgtctgtcagaagtattttcagcccac |
36155578 |
T |
|
| Q |
117 |
tcctagatgtaacacgtgaaatagcaa |
143 |
Q |
| |
|
||||||| || |||||||||||||||| |
|
|
| T |
36155577 |
tcctagaagtcacacgtgaaatagcaa |
36155551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 326 - 381
Target Start/End: Original strand, 43787478 - 43787533
Alignment:
| Q |
326 |
atattaagagtgtaagtttaaaaagacatgtaaagcaagatatttcaccacactaa |
381 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43787478 |
atattaagagtgtaagtttaaaaagacatgtaaagcaagatatttcaccacactaa |
43787533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 28 - 143
Target Start/End: Complemental strand, 47742234 - 47742112
Alignment:
| Q |
28 |
ttcatgataaattgcggaaaacttctttgtaaacaacatttga-------ttgatgcaagccccttcatcgtctgttagaagtattttcagcccactcct |
120 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||| || |||||| | ||||||||||||||||||||||| |
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|
| T |
47742234 |
ttcatgataaattgcgaaaaacttctttgtaaacgacatttgaagtacttttgatgcaagccccatcttcgtctatcagaagtattttcagcccactcct |
47742135 |
T |
|
| Q |
121 |
agatgtaacacgtgaaatagcaa |
143 |
Q |
| |
|
||| || |||||||||||||||| |
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|
| T |
47742134 |
agaagtcacacgtgaaatagcaa |
47742112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 61; Significance: 6e-26; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 28 - 143
Target Start/End: Original strand, 2267334 - 2267455
Alignment:
| Q |
28 |
ttcatgataaattgcggaaaacttctttgtaaacaacatttga-------ttgatgcaagccccttcatcgtctgttagaagtattttcagcccactcct |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||| ||||||||| |||| || || ||||| ||||||||||||||||||||||| |
|
|
| T |
2267334 |
ttcatgataaattgcggaaaacttctttgtaaacgacatttgaagtattgttgatgcaa-ccccatcgtcttctgtcagaagtattttcagcccactcct |
2267432 |
T |
|
| Q |
121 |
agatgtaacacgtgaaatagcaa |
143 |
Q |
| |
|
||| || |||||||||||||||| |
|
|
| T |
2267433 |
agaagtcacacgtgaaatagcaa |
2267455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 38 - 70
Target Start/End: Complemental strand, 26533557 - 26533525
Alignment:
| Q |
38 |
attgcggaaaacttctttgtaaacaacatttga |
70 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| |
|
|
| T |
26533557 |
attgcggaaaatttctttgtaaacaacatttga |
26533525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 38 - 70
Target Start/End: Complemental strand, 26533670 - 26533638
Alignment:
| Q |
38 |
attgcggaaaacttctttgtaaacaacatttga |
70 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| |
|
|
| T |
26533670 |
attgcggaaaatttctttgtaaacaacatttga |
26533638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 9e-22; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 28 - 143
Target Start/End: Complemental strand, 18208288 - 18208165
Alignment:
| Q |
28 |
ttcatgataaa-ttgcggaaaacttctttgtaaacaacatttga-------ttgatgcaagccccttcatcgtctgttagaagtattttcagcccactcc |
119 |
Q |
| |
|
||||||||||| ||||| ||||||||||||||||| |||||||| |||||||||||||| || || ||||| |||| ||||||||||||||||| |
|
|
| T |
18208288 |
ttcatgataaaattgcgaaaaacttctttgtaaacgacatttgaagtattgttgatgcaagccccatcgtcatctgtcagaaatattttcagcccactcc |
18208189 |
T |
|
| Q |
120 |
tagatgtaacacgtgaaatagcaa |
143 |
Q |
| |
|
|||| || |||||||||||||||| |
|
|
| T |
18208188 |
tagaagtcacacgtgaaatagcaa |
18208165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 28 - 143
Target Start/End: Complemental strand, 16804939 - 16804817
Alignment:
| Q |
28 |
ttcatgataaattgcggaaaacttctttgtaaacaacatttga-------ttgatgcaagccccttcatcgtctgttagaagtattttcagcccactcct |
120 |
Q |
| |
|
|||||||||||||||| |||||||||||||| | |||||||| |||||||||||||| || |||||| | ||||||||||||||||||||||| |
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|
| T |
16804939 |
ttcatgataaattgcgaaaaacttctttgtacatgacatttgaagtacttttgatgcaagccccatcgtcgtctatcagaagtattttcagcccactcct |
16804840 |
T |
|
| Q |
121 |
agatgtaacacgtgaaatagcaa |
143 |
Q |
| |
|
||| || ||| |||||||||||| |
|
|
| T |
16804839 |
agaagtcacatgtgaaatagcaa |
16804817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 38 - 70
Target Start/End: Complemental strand, 33868429 - 33868397
Alignment:
| Q |
38 |
attgcggaaaacttctttgtaaacaacatttga |
70 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| |
|
|
| T |
33868429 |
attgcggaaaatttctttgtaaacaacatttga |
33868397 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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