View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14573_low_11 (Length: 271)
Name: NF14573_low_11
Description: NF14573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14573_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 14 - 253
Target Start/End: Original strand, 31651701 - 31651940
Alignment:
| Q |
14 |
aagcaaaggggcatcccggataatcaaattcatctgaatcagctttcctcatacgctcgggatgaaactgcaatcccataataaacttaccctcttctgg |
113 |
Q |
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| T |
31651701 |
aagcaaaggggcatcccggataatcaaattcatctgaatcagctttcctcatccgctcgggatgaaactgcaatcccataataaacttaccctcttctgg |
31651800 |
T |
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| Q |
114 |
attataagcatcagggtcataaaacccttcaatcaaaccatcaggagcaaaagccattggaacaaaacgttgtgcaagtctcttaacaccttgatgatga |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
31651801 |
attataagcatcagggtcataaaacccttcaatcaaaccatcaggagcaaaagccattggaacaaaacgctgtgcaagtctcttaacaccttgatgatga |
31651900 |
T |
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| Q |
214 |
tagctattaaccaaaatgtccattttatcatcttccaaag |
253 |
Q |
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| T |
31651901 |
tagctattaaccaaaatgtccattttatcatcttccaaag |
31651940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 141; Significance: 5e-74; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 22 - 230
Target Start/End: Complemental strand, 219497 - 219289
Alignment:
| Q |
22 |
gggcatcccggataatcaaattcatctgaatcagctttcctcatacgctcgggatgaaactgcaatcccataataaacttaccctcttctggattataag |
121 |
Q |
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|||||||| || |||||||| |||||||||| || ||| ||||||||||| || ||||| ||||| |||||||||||||||||||||||||||||||||| |
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| T |
219497 |
gggcatccagggtaatcaaaatcatctgaattaggttttctcatacgctcagggtgaaattgcaaacccataataaacttaccctcttctggattataag |
219398 |
T |
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| Q |
122 |
catcagggtcataaaacccttcaatcaaaccatcaggagcaaaagccattggaacaaaacgttgtgcaagtctcttaacaccttgatgatgatagctatt |
221 |
Q |
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||| ||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| | ||||||||| |||||||||||||||||||| |
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| T |
219397 |
cataagggtcataaaacccttcaattaaaccatcattagcaaaagccattggaacaaaacgttgtgccaatctcttaaccccttgatgatgatagctatt |
219298 |
T |
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| Q |
222 |
aaccaaaat |
230 |
Q |
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||||||||| |
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| T |
219297 |
aaccaaaat |
219289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 58 - 226
Target Start/End: Complemental strand, 49630739 - 49630571
Alignment:
| Q |
58 |
ttcctcatacgctcgggatgaaactgcaatcccataataaacttaccctcttctggattataagcatcagggtcataaaacccttcaatcaaaccatcag |
157 |
Q |
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|||||||| | ||| |||||||| || | |||||||||||||| |||||||| ||||| ||| || || | ||||| ||||||| ||||||||| | |
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| T |
49630739 |
ttcctcattctctctggatgaaattgaaggcccataataaactttccctcttcaggattgtaattatttggattgtaaaatccttcaaccaaaccatctg |
49630640 |
T |
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| Q |
158 |
gagcaaaagccattggaacaaaacgttgtgcaagtctcttaacaccttgatgatgatagctattaacca |
226 |
Q |
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| T |
49630639 |
gagcaaatgccattggaacaaatctctctgcaagtctcttaacaccctgatggtggtaactattcacca |
49630571 |
T |
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