View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14573_low_12 (Length: 267)

Name: NF14573_low_12
Description: NF14573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14573_low_12
NF14573_low_12
[»] chr6 (7 HSPs)
chr6 (1-74)||(21945739-21945813)
chr6 (90-173)||(3197397-3197480)
chr6 (83-140)||(5076651-5076708)
chr6 (231-267)||(1657112-1657148)
chr6 (231-263)||(14153140-14153172)
chr6 (231-267)||(18433530-18433566)
chr6 (231-267)||(18822749-18822785)
[»] chr8 (11 HSPs)
chr8 (82-194)||(427922-428033)
chr8 (95-194)||(26217962-26218056)
chr8 (90-163)||(1142957-1143030)
chr8 (84-131)||(151010-151057)
chr8 (135-175)||(1349098-1349138)
chr8 (145-189)||(15892147-15892191)
chr8 (231-267)||(20529170-20529206)
chr8 (231-267)||(20653342-20653378)
chr8 (231-267)||(21493818-21493854)
chr8 (231-267)||(24105578-24105614)
chr8 (231-267)||(31193654-31193690)
[»] chr2 (8 HSPs)
chr2 (84-139)||(23685245-23685300)
chr2 (84-173)||(6282492-6282581)
chr2 (108-160)||(32239704-32239756)
chr2 (84-163)||(14566509-14566588)
chr2 (231-267)||(16936439-16936475)
chr2 (231-267)||(17007099-17007135)
chr2 (229-267)||(25264768-25264806)
chr2 (84-172)||(25770376-25770464)
[»] chr1 (9 HSPs)
chr1 (84-175)||(38041122-38041213)
chr1 (84-187)||(47542948-47543051)
chr1 (92-172)||(26088625-26088706)
chr1 (145-189)||(31421894-31421938)
chr1 (108-169)||(42497831-42497892)
chr1 (231-267)||(20346884-20346920)
chr1 (231-267)||(41395065-41395101)
chr1 (84-140)||(50270336-50270392)
chr1 (231-267)||(51453308-51453344)
[»] chr5 (8 HSPs)
chr5 (83-197)||(15798864-15798977)
chr5 (93-173)||(36170270-36170350)
chr5 (93-160)||(19550957-19551023)
chr5 (90-173)||(23229521-23229604)
chr5 (95-173)||(41642474-41642552)
chr5 (231-267)||(4866132-4866168)
chr5 (84-164)||(7733029-7733109)
chr5 (231-267)||(21232917-21232953)
[»] chr3 (14 HSPs)
chr3 (92-160)||(15042783-15042851)
chr3 (85-160)||(43613612-43613687)
chr3 (144-201)||(16252443-16252500)
chr3 (231-267)||(6146086-6146122)
chr3 (231-267)||(17102235-17102271)
chr3 (82-161)||(14464063-14464142)
chr3 (126-189)||(45003186-45003249)
chr3 (229-267)||(17522195-17522233)
chr3 (231-263)||(6153643-6153675)
chr3 (231-267)||(12559548-12559584)
chr3 (84-140)||(14477335-14477391)
chr3 (227-267)||(53771899-53771939)
chr3 (231-267)||(54424912-54424948)
chr3 (231-267)||(55513760-55513796)
[»] chr7 (15 HSPs)
chr7 (82-197)||(8116869-8116983)
chr7 (230-267)||(26068925-26068962)
chr7 (230-267)||(26069583-26069620)
chr7 (230-267)||(26093370-26093407)
chr7 (231-267)||(39046007-39046043)
chr7 (228-267)||(44866118-44866157)
chr7 (135-197)||(18146173-18146234)
chr7 (99-172)||(16984338-16984411)
chr7 (84-169)||(22199176-22199261)
chr7 (84-169)||(22238560-22238645)
chr7 (148-193)||(30361556-30361601)
chr7 (231-267)||(11288320-11288356)
chr7 (231-267)||(15862773-15862809)
chr7 (231-267)||(36025004-36025040)
chr7 (231-267)||(36053527-36053563)
[»] chr4 (14 HSPs)
chr4 (145-189)||(43148645-43148689)
chr4 (230-265)||(20812857-20812892)
chr4 (84-160)||(40443378-40443450)
chr4 (86-189)||(40443538-40443641)
chr4 (84-178)||(542422-542515)
chr4 (148-194)||(32936886-32936932)
chr4 (150-195)||(4787223-4787268)
chr4 (143-188)||(17115809-17115854)
chr4 (231-267)||(8871783-8871819)
chr4 (227-267)||(9296375-9296415)
chr4 (231-267)||(16733072-16733108)
chr4 (231-267)||(30458765-30458801)
chr4 (231-267)||(34396159-34396195)
chr4 (231-267)||(45458174-45458210)
[»] scaffold0335 (1 HSPs)
scaffold0335 (228-267)||(6886-6925)
[»] scaffold0107 (1 HSPs)
scaffold0107 (230-267)||(32163-32200)
[»] scaffold0293 (1 HSPs)
scaffold0293 (231-267)||(5515-5551)
[»] scaffold0260 (1 HSPs)
scaffold0260 (231-267)||(9207-9243)
[»] scaffold0132 (1 HSPs)
scaffold0132 (231-267)||(14357-14393)


Alignment Details
Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 21945739 - 21945813
Alignment:
Q  1 ggtagcaaagagtaaatcagtaaggtgttaaaatgtgaggtgagatggttgta-cttgggggctagaccctctat 74  Q
    |||||||||||| ||||||||||||||||||||||||||||| |||||||||| || ||||||||||||||||||    
T  21945739 ggtagcaaagagcaaatcagtaaggtgttaaaatgtgaggtgtgatggttgtacctagggggctagaccctctat 21945813  T

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Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 90 - 173
Target Start/End: Original strand, 3197397 - 3197480
Alignment:
Q  90 tgctcttctcccaactcgttttgctcattctcaattaaacttttgaaaatgtccctgtgtgagttaactcatgctagtgttaat 173  Q
    ||||||||| ||||| | ||||||||||||||||| |||||||| ||||||  | |||||||||||||||  ||||||||||||    
T  3197397 tgctcttcttccaacaccttttgctcattctcaatcaaactttttaaaatgcacatgtgtgagttaactcgcgctagtgttaat 3197480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 83 - 140
Target Start/End: Complemental strand, 5076708 - 5076651
Alignment:
Q  83 ggaattctgctcttctcccaactcgttttgctcattctcaattaaacttttgaaaatg 140  Q
    |||||||||||||||||||||| |||||||||||||| |||  ||| ||| |||||||    
T  5076708 ggaattctgctcttctcccaacacgttttgctcattcccaaccaaaatttcgaaaatg 5076651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 267
Target Start/End: Original strand, 1657112 - 1657148
Alignment:
Q  231 tgtaacagtccgatttttcgttagatttattttaatt 267  Q
    |||||||| ||||||||||| ||||||||||||||||    
T  1657112 tgtaacagcccgatttttcgctagatttattttaatt 1657148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 263
Target Start/End: Complemental strand, 14153172 - 14153140
Alignment:
Q  231 tgtaacagtccgatttttcgttagatttatttt 263  Q
    ||||||||||| |||||||||||||||||||||    
T  14153172 tgtaacagtccaatttttcgttagatttatttt 14153140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 267
Target Start/End: Complemental strand, 18433566 - 18433530
Alignment:
Q  231 tgtaacagtccgatttttcgttagatttattttaatt 267  Q
    |||||||| ||||||||||||| ||||||||||||||    
T  18433566 tgtaacagcccgatttttcgtttgatttattttaatt 18433530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 267
Target Start/End: Original strand, 18822749 - 18822785
Alignment:
Q  231 tgtaacagtccgatttttcgttagatttattttaatt 267  Q
    |||||||| ||||||||||| ||||||||||||||||    
T  18822749 tgtaacagcccgatttttcggtagatttattttaatt 18822785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 82 - 194
Target Start/End: Original strand, 427922 - 428033
Alignment:
Q  82 aggaattctgctcttctcccaactcgttttgctcattctcaattaaacttttgaaaatgtccctgtgtgagttaactcatgctagtgttaatctttgtgt 181  Q
    |||||||||||| ||||||||||  ||||||||||||| |||  ||||||  ||||||| ||||| ||||||||||| ||| |||||||||| |||||||    
T  427922 aggaattctgctattctcccaacatgttttgctcattcccaaccaaacttccgaaaatgcccctgcgtgagttaacttatgttagtgttaat-tttgtgt 428020  T
Q  182 gagttaacccacg 194  Q
    || ||||| ||||    
T  428021 gacttaactcacg 428033  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 95 - 194
Target Start/End: Original strand, 26217962 - 26218056
Alignment:
Q  95 ttctcccaactcgttttgctcattctcaattaaacttttgaaaatgtccctgtgtgagttaactcatgctagtgttaatctttgtgtgagttaacccacg 194  Q
    |||||| ||| |||||||||||||| |||  ||||||| ||||||  |     |||||||||||||||||||||||||||| || |||||||||| ||||    
T  26217962 ttctcctaacacgttttgctcattcccaaccaaactttcgaaaatacc-----gtgagttaactcatgctagtgttaatctctgcgtgagttaactcacg 26218056  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 90 - 163
Target Start/End: Complemental strand, 1143030 - 1142957
Alignment:
Q  90 tgctcttctcccaactcgttttgctcattctcaattaaacttttgaaaatgtccctgtgtgagttaactcatgc 163  Q
    ||||||||||||| | ||||||||||| || ||| |||| ||||||||||| | ||| |||| |||||||||||    
T  1143030 tgctcttctcccatcacgttttgctcactcccaaataaatttttgaaaatgcctctgcgtgacttaactcatgc 1142957  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 84 - 131
Target Start/End: Complemental strand, 151057 - 151010
Alignment:
Q  84 gaattctgctcttctcccaactcgttttgctcattctcaattaaactt 131  Q
    |||||||||||||||||||| | ||||||||||||| |||| ||||||    
T  151057 gaattctgctcttctcccaatttgttttgctcattcccaatcaaactt 151010  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 135 - 175
Target Start/End: Original strand, 1349098 - 1349138
Alignment:
Q  135 aaaatgtccctgtgtgagttaactcatgctagtgttaatct 175  Q
    |||||||||||| ||||||||||||| |||||||| |||||    
T  1349098 aaaatgtccctgcgtgagttaactcacgctagtgtaaatct 1349138  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 189
Target Start/End: Original strand, 15892147 - 15892191
Alignment:
Q  145 tgtgtgagttaactcatgctagtgttaatctttgtgtgagttaac 189  Q
    |||||||||||||||| | |||||||||||| || ||||||||||    
T  15892147 tgtgtgagttaactcacgttagtgttaatctctgcgtgagttaac 15892191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 267
Target Start/End: Original strand, 20529170 - 20529206
Alignment:
Q  231 tgtaacagtccgatttttcgttagatttattttaatt 267  Q
    |||||||| ||||||||||| ||||||||||||||||    
T  20529170 tgtaacagcccgatttttcgctagatttattttaatt 20529206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 267
Target Start/End: Original strand, 20653342 - 20653378
Alignment:
Q  231 tgtaacagtccgatttttcgttagatttattttaatt 267  Q
    |||||||| ||||||||||| ||||||||||||||||    
T  20653342 tgtaacagcccgatttttcgctagatttattttaatt 20653378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 267
Target Start/End: Original strand, 21493818 - 21493854
Alignment:
Q  231 tgtaacagtccgatttttcgttagatttattttaatt 267  Q
    |||||||||||||||||| | ||||||||||||||||    
T  21493818 tgtaacagtccgatttttagctagatttattttaatt 21493854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 267
Target Start/End: Original strand, 24105578 - 24105614
Alignment:
Q  231 tgtaacagtccgatttttcgttagatttattttaatt 267  Q
    |||||||| ||||||||||| ||||||||||||||||    
T  24105578 tgtaacagcccgatttttcggtagatttattttaatt 24105614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 267
Target Start/End: Original strand, 31193654 - 31193690
Alignment:
Q  231 tgtaacagtccgatttttcgttagatttattttaatt 267  Q
    |||||||| |||||||||| |||||||||||||||||    
T  31193654 tgtaacagcccgatttttcattagatttattttaatt 31193690  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 84 - 139
Target Start/End: Complemental strand, 23685300 - 23685245
Alignment:
Q  84 gaattctgctcttctcccaactcgttttgctcattctcaattaaacttttgaaaat 139  Q
    ||||||||||||||||||||||||||||||||||| ||||  |||||| |||||||    
T  23685300 gaattctgctcttctcccaactcgttttgctcattatcaaccaaacttctgaaaat 23685245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 84 - 173
Target Start/End: Complemental strand, 6282581 - 6282492
Alignment:
Q  84 gaattctgctcttctcccaactcgttttgctcattctcaattaaacttttgaaaatgtccctgtgtgagttaactcatgctagtgttaat 173  Q
    ||||| |||||||||||||||| |||||| ||||| | || ||||||||||||||| | | ||||||| |||| ||| | ||||||||||    
T  6282581 gaattatgctcttctcccaacttgttttgatcatttttaactaaacttttgaaaatattcatgtgtgaattaattcacgttagtgttaat 6282492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 108 - 160
Target Start/End: Complemental strand, 32239756 - 32239704
Alignment:
Q  108 ttttgctcattctcaattaaacttttgaaaatgtccctgtgtgagttaactca 160  Q
    |||||||||||| |||  ||||||| |||||||||||||||||||||||||||    
T  32239756 ttttgctcattcccaaccaaactttcgaaaatgtccctgtgtgagttaactca 32239704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 84 - 163
Target Start/End: Complemental strand, 14566588 - 14566509
Alignment:
Q  84 gaattctgctcttctcccaactcgttttgctcattctcaattaaacttttgaaaatgtccctgtgtgagttaactcatgc 163  Q
    ||||||| ||||||||||||| |||||||||||||  |||  ||||||  ||||||| ||||  ||||||||||||||||    
T  14566588 gaattctactcttctcccaacacgttttgctcatttacaaccaaacttccgaaaatgcccctacgtgagttaactcatgc 14566509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 231 - 267
Target Start/End: Complemental strand, 16936475 - 16936439
Alignment:
Q  231 tgtaacagtccgatttttcgttagatttattttaatt 267  Q
    |||||||| ||||||||||||||||||||||||||||    
T  16936475 tgtaacagcccgatttttcgttagatttattttaatt 16936439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 231 - 267
Target Start/End: Complemental strand, 17007135 - 17007099
Alignment:
Q  231 tgtaacagtccgatttttcgttagatttattttaatt 267  Q
    |||||||| ||||||||||||||||||||||||||||    
T  17007135 tgtaacagcccgatttttcgttagatttattttaatt 17007099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 229 - 267
Target Start/End: Original strand, 25264768 - 25264806
Alignment:
Q  229 actgtaacagtccgatttttcgttagatttattttaatt 267  Q
    |||||||||||||||||||| | ||||||||||||||||    
T  25264768 actgtaacagtccgatttttagctagatttattttaatt 25264806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 84 - 172
Target Start/End: Complemental strand, 25770464 - 25770376
Alignment:
Q  84 gaattctgctcttctcccaactcgttttgctcattctcaattaaacttttgaaaatgtccctgtgtgagttaactcatgctagtgttaa 172  Q
    |||||||||||||  |||||| | ||||||||||| |||| | || || | ||||||  | || ||||||||||||| |||||||||||    
T  25770464 gaattctgctctttacccaacacattttgctcattttcaactgaaattctaaaaatgctcatgcgtgagttaactcacgctagtgttaa 25770376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 84 - 175
Target Start/End: Original strand, 38041122 - 38041213
Alignment:
Q  84 gaattctgctcttctcccaactcgttttgctcattctcaattaaacttttgaaaatgtccctgtgtgagttaactcatgctagtgttaatct 175  Q
    ||||||||||||||||||||| |||||||||||||  |||  |||||||||||||||  | || ||||||||| ||| ||  ||||||||||    
T  38041122 gaattctgctcttctcccaacacgttttgctcatttccaaccaaacttttgaaaatgctcatgcgtgagttaattcacgcatgtgttaatct 38041213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 84 - 187
Target Start/End: Original strand, 47542948 - 47543051
Alignment:
Q  84 gaattctgctcttctcccaactcgttttgctcattctcaattaaacttttgaaaatgtccctgtgtgagttaactcatgctagtgttaatctttgtgtga 183  Q
    |||||||||||||  |||||| | |||||||||||| ||| | | ||  |||||||||||||| | ||||||||||| |||||||| ||||| || ||||    
T  47542948 gaattctgctctttccccaacacattttgctcattcccaacttacctactgaaaatgtccctgcgggagttaactcacgctagtgtaaatctctgcgtga 47543047  T
Q  184 gtta 187  Q
    ||||    
T  47543048 gtta 47543051  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 92 - 172
Target Start/End: Original strand, 26088625 - 26088706
Alignment:
Q  92 ctcttctcccaactcgttttgctcattctcaattaaacttttgaaaatgtccct-gtgtgagttaactcatgctagtgttaa 172  Q
    |||||||||||||  ||||||||||||| |||| ||||||  ||||||| || | ||||||||||||||||||  |||||||    
T  26088625 ctcttctcccaacaagttttgctcattcccaatcaaacttccgaaaatgcccatggtgtgagttaactcatgcatgtgttaa 26088706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 189
Target Start/End: Original strand, 31421894 - 31421938
Alignment:
Q  145 tgtgtgagttaactcatgctagtgttaatctttgtgtgagttaac 189  Q
    |||||||||||||||| | ||||||||||||||| ||||||||||    
T  31421894 tgtgtgagttaactcaagttagtgttaatctttgcgtgagttaac 31421938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 108 - 169
Target Start/End: Original strand, 42497831 - 42497892
Alignment:
Q  108 ttttgctcattctcaattaaacttttgaaaatgtccctgtgtgagttaactcatgctagtgt 169  Q
    |||||||||||||||| |||| |  | |||||| || |||||||||||||||| ||||||||    
T  42497831 ttttgctcattctcaactaaaataatcaaaatgcccatgtgtgagttaactcacgctagtgt 42497892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 267
Target Start/End: Complemental strand, 20346920 - 20346884
Alignment:
Q  231 tgtaacagtccgatttttcgttagatttattttaatt 267  Q
    |||||||| ||||||||| ||||||||||||||||||    
T  20346920 tgtaacagcccgatttttagttagatttattttaatt 20346884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 267
Target Start/End: Complemental strand, 41395101 - 41395065
Alignment:
Q  231 tgtaacagtccgatttttcgttagatttattttaatt 267  Q
    |||||||||||||||||| | ||||||||||||||||    
T  41395101 tgtaacagtccgatttttagctagatttattttaatt 41395065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 84 - 140
Target Start/End: Original strand, 50270336 - 50270392
Alignment:
Q  84 gaattctgctcttctcccaactcgttttgctcattctcaattaaacttttgaaaatg 140  Q
    ||||| ||||||||||||||| | ||||||| ||||||||  ||||||| |||||||    
T  50270336 gaattatgctcttctcccaacccattttgcttattctcaaccaaactttcgaaaatg 50270392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 267
Target Start/End: Complemental strand, 51453344 - 51453308
Alignment:
Q  231 tgtaacagtccgatttttcgttagatttattttaatt 267  Q
    |||||||||| ||||||| ||||||||||||||||||    
T  51453344 tgtaacagtctgatttttagttagatttattttaatt 51453308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 83 - 197
Target Start/End: Complemental strand, 15798977 - 15798864
Alignment:
Q  83 ggaattctgctcttctcccaactcgttttgctcattctcaattaaacttttgaaaatgtccctgtgtgagttaactcatgctagtgttaatctttgtgtg 182  Q
    |||||| |||||||||||||||  ||||||||||||  |||  ||| |||  ||| |  ||||| |||||||||||||||||||||||||| |||| |||    
T  15798977 ggaattatgctcttctcccaacatgttttgctcatttccaaccaaattttcaaaattacccctgcgtgagttaactcatgctagtgttaat-tttgcgtg 15798879  T
Q  183 agttaacccacgttg 197  Q
    | ||||| |||||||    
T  15798878 acttaactcacgttg 15798864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 93 - 173
Target Start/End: Original strand, 36170270 - 36170350
Alignment:
Q  93 tcttctcccaactcgttttgctcattctcaattaaacttttgaaaatgtccctgtgtgagttaactcatgctagtgttaat 173  Q
    |||||||||||| ||||||||| ||||| ||| |||||||  |||||| | ||| ||||| |||||||||| |||||||||    
T  36170270 tcttctcccaacacgttttgcttattcttaatcaaactttcaaaaatgacactgcgtgagctaactcatgcaagtgttaat 36170350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 93 - 160
Target Start/End: Complemental strand, 19551023 - 19550957
Alignment:
Q  93 tcttctcccaactcgttttgctcattctcaattaaacttttgaaaatgtccctgtgtgagttaactca 160  Q
    ||||||||||||  |||||| |||||||||||||||  || ||||||||| ||| |||||||||||||    
T  19551023 tcttctcccaacaagttttgttcattctcaattaaatattcgaaaatgtctctg-gtgagttaactca 19550957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 90 - 173
Target Start/End: Complemental strand, 23229604 - 23229521
Alignment:
Q  90 tgctcttctcccaactcgttttgctcattctcaattaaacttttgaaaatgtccctgtgtgagttaactcatgctagtgttaat 173  Q
    ||||||||| |||||   ||||| ||||||||||  ||||||  |||||||| | |||||||||||||||||||  ||||||||    
T  23229604 tgctcttcttccaacatattttgttcattctcaaccaaacttccgaaaatgttcatgtgtgagttaactcatgcatgtgttaat 23229521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 173
Target Start/End: Original strand, 41642474 - 41642552
Alignment:
Q  95 ttctcccaactcgttttgctcattctcaattaaacttttgaaaatgtccctgtgtgagttaactcatgctagtgttaat 173  Q
    |||| ||||| |||||||||||||  |||| ||| |||| ||||||||| ||| ||| ||||| || ||||||||||||    
T  41642474 ttcttccaacacgttttgctcatttccaatcaaatttttaaaaatgtccatgtttgacttaacccacgctagtgttaat 41642552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 267
Target Start/End: Complemental strand, 4866168 - 4866132
Alignment:
Q  231 tgtaacagtccgatttttcgttagatttattttaatt 267  Q
    |||||||| ||||||||| ||||||||||||||||||    
T  4866168 tgtaacagcccgatttttagttagatttattttaatt 4866132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 84 - 164
Target Start/End: Original strand, 7733029 - 7733109
Alignment:
Q  84 gaattctgctcttctcccaactcgttttgctcattctcaattaaacttttgaaaatgtccctgtgtgagttaactcatgct 164  Q
    ||||||||||||||||| ||| | |||| ||||||| |||| |||| |   ||||||||  || |||||||||||||||||    
T  7733029 gaattctgctcttctcctaacacattttcctcattcccaatcaaacctccaaaaatgtctatgcgtgagttaactcatgct 7733109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 267
Target Start/End: Original strand, 21232917 - 21232953
Alignment:
Q  231 tgtaacagtccgatttttcgttagatttattttaatt 267  Q
    |||||||||||||||||| | ||||||||||||||||    
T  21232917 tgtaacagtccgatttttagctagatttattttaatt 21232953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 92 - 160
Target Start/End: Original strand, 15042783 - 15042851
Alignment:
Q  92 ctcttctcccaactcgttttgctcattctcaattaaacttttgaaaatgtccctgtgtgagttaactca 160  Q
    ||||||||| ||| |||||||||| ||| |||  ||||||||||||||| ||||| |||||||||||||    
T  15042783 ctcttctcctaacacgttttgctccttcccaaccaaacttttgaaaatgaccctgcgtgagttaactca 15042851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 85 - 160
Target Start/End: Original strand, 43613612 - 43613687
Alignment:
Q  85 aattctgctcttctcccaactcgttttgctcattctcaattaaacttttgaaaatgtccctgtgtgagttaactca 160  Q
    |||||||||||||| ||||| ||||||||||||| ||||  ||||||  ||||| ||| ||| |||||||||||||    
T  43613612 aattctgctcttcttccaacacgttttgctcattttcaaccaaacttccgaaaacgtctctgcgtgagttaactca 43613687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 144 - 201
Target Start/End: Original strand, 16252443 - 16252500
Alignment:
Q  144 ctgtgtgagttaactcatgctagtgttaatctttgtgtgagttaacccacgttggata 201  Q
    ||||||||| ||||||| ||||||||||| || ||||||| ||||| |||||||||||    
T  16252443 ctgtgtgagctaactcacgctagtgttaacctctgtgtgacttaactcacgttggata 16252500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 231 - 267
Target Start/End: Original strand, 6146086 - 6146122
Alignment:
Q  231 tgtaacagtccgatttttcgttagatttattttaatt 267  Q
    |||||||| ||||||||||||||||||||||||||||    
T  6146086 tgtaacagcccgatttttcgttagatttattttaatt 6146122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 231 - 267
Target Start/End: Complemental strand, 17102271 - 17102235
Alignment:
Q  231 tgtaacagtccgatttttcgttagatttattttaatt 267  Q
    |||||||| ||||||||||||||||||||||||||||    
T  17102271 tgtaacagcccgatttttcgttagatttattttaatt 17102235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 82 - 161
Target Start/End: Original strand, 14464063 - 14464142
Alignment:
Q  82 aggaattctgctcttctcccaactcgttttgctcattctcaattaaacttttgaaaatgtccctgtgtgagttaactcat 161  Q
    |||||| ||||||||||||||||   ||||||||  || ||| | |||||| ||||||||| ||| ||||||||||||||    
T  14464063 aggaatactgctcttctcccaacaatttttgctcgctcccaactgaactttcgaaaatgtctctgcgtgagttaactcat 14464142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 126 - 189
Target Start/End: Complemental strand, 45003249 - 45003186
Alignment:
Q  126 aaacttttgaaaatgtccctgtgtgagttaactcatgctagtgttaatctttgtgtgagttaac 189  Q
    |||||||  |||||| ||||| ||||||||||||| |||||||||||||| |  ||||||||||    
T  45003249 aaactttcaaaaatgcccctgcgtgagttaactcacgctagtgttaatctctacgtgagttaac 45003186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 229 - 267
Target Start/End: Original strand, 17522195 - 17522233
Alignment:
Q  229 actgtaacagtccgatttttcgttagatttattttaatt 267  Q
    |||||||||| ||||||||||| ||||||||||||||||    
T  17522195 actgtaacagcccgatttttcgctagatttattttaatt 17522233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 263
Target Start/End: Original strand, 6153643 - 6153675
Alignment:
Q  231 tgtaacagtccgatttttcgttagatttatttt 263  Q
    |||||||| ||||||||||||||||||||||||    
T  6153643 tgtaacagcccgatttttcgttagatttatttt 6153675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 267
Target Start/End: Original strand, 12559548 - 12559584
Alignment:
Q  231 tgtaacagtccgatttttcgttagatttattttaatt 267  Q
    |||||||| ||||||||||| ||||||||||||||||    
T  12559548 tgtaacagcccgatttttcgctagatttattttaatt 12559584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 84 - 140
Target Start/End: Complemental strand, 14477391 - 14477335
Alignment:
Q  84 gaattctgctcttctcccaactcgttttgctcattctcaattaaacttttgaaaatg 140  Q
    ||||| || ||||||||||||||||||||||||||  |||  ||||||| |||||||    
T  14477391 gaattatgttcttctcccaactcgttttgctcatttccaaccaaactttcgaaaatg 14477335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 267
Target Start/End: Complemental strand, 53771939 - 53771899
Alignment:
Q  227 aaactgtaacagtccgatttttcgttagatttattttaatt 267  Q
    |||||||||||| ||||||||| | ||||||||||||||||    
T  53771939 aaactgtaacagcccgatttttagctagatttattttaatt 53771899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 267
Target Start/End: Complemental strand, 54424948 - 54424912
Alignment:
Q  231 tgtaacagtccgatttttcgttagatttattttaatt 267  Q
    |||||||  ||||||||||||||||||||||||||||    
T  54424948 tgtaacaacccgatttttcgttagatttattttaatt 54424912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 267
Target Start/End: Complemental strand, 55513796 - 55513760
Alignment:
Q  231 tgtaacagtccgatttttcgttagatttattttaatt 267  Q
    |||||||||||||||||| | ||||||||||||||||    
T  55513796 tgtaacagtccgatttttagctagatttattttaatt 55513760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 82 - 197
Target Start/End: Original strand, 8116869 - 8116983
Alignment:
Q  82 aggaattctgctcttctcccaactcgttttgctcattctcaattaaacttttgaaaatgtccctgtgtgagttaactcatgctagtgttaatctttgtgt 181  Q
    ||||||| ||||||||||||||| |||||||||||||| |||  ||| ||   ||||||  |||||||||||||| ||| ||  ||||| || | |||||    
T  8116869 aggaattttgctcttctcccaacacgttttgctcattcccaaccaaatttccaaaaatgctcctgtgtgagttaattcacgcatgtgtttat-tatgtgt 8116967  T
Q  182 gagttaacccacgttg 197  Q
    |||||||| |||||||    
T  8116968 gagttaacacacgttg 8116983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 230 - 267
Target Start/End: Original strand, 26068925 - 26068962
Alignment:
Q  230 ctgtaacagtccgatttttcgttagatttattttaatt 267  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  26068925 ctgtaacagcccgatttttcgttagatttattttaatt 26068962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 230 - 267
Target Start/End: Original strand, 26069583 - 26069620
Alignment:
Q  230 ctgtaacagtccgatttttcgttagatttattttaatt 267  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  26069583 ctgtaacagcccgatttttcgttagatttattttaatt 26069620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 230 - 267
Target Start/End: Original strand, 26093370 - 26093407
Alignment:
Q  230 ctgtaacagtccgatttttcgttagatttattttaatt 267  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  26093370 ctgtaacagcccgatttttcgttagatttattttaatt 26093407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 231 - 267
Target Start/End: Original strand, 39046007 - 39046043
Alignment:
Q  231 tgtaacagtccgatttttcgttagatttattttaatt 267  Q
    |||||||||||||||||| ||||||||||||||||||    
T  39046007 tgtaacagtccgatttttagttagatttattttaatt 39046043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 228 - 267
Target Start/End: Complemental strand, 44866157 - 44866118
Alignment:
Q  228 aactgtaacagtccgatttttcgttagatttattttaatt 267  Q
    ||||||||||  ||||||||||||||||||||||||||||    
T  44866157 aactgtaacaacccgatttttcgttagatttattttaatt 44866118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 197
Target Start/End: Original strand, 18146173 - 18146234
Alignment:
Q  135 aaaatgtccctgtgtgagttaactcatgctagtgttaatctttgtgtgagttaacccacgttg 197  Q
    ||||||| |||| |||||||||||||||||||||||||  |||||||| |||||  |||||||    
T  18146173 aaaatgttcctgcgtgagttaactcatgctagtgttaa-atttgtgtgggttaagtcacgttg 18146234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 99 - 172
Target Start/End: Original strand, 16984338 - 16984411
Alignment:
Q  99 cccaactcgttttgctcattctcaattaaacttttgaaaatgtccctgtgtgagttaactcatgctagtgttaa 172  Q
    |||||| | |||||||||||| ||| |||| ||   ||| | |||||||||||||||||||| |||||||||||    
T  16984338 cccaacacattttgctcattcccaactaaaattccaaaattatccctgtgtgagttaactcacgctagtgttaa 16984411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 84 - 169
Target Start/End: Complemental strand, 22199261 - 22199176
Alignment:
Q  84 gaattctgctcttctcccaactcgttttgctcattctcaattaaacttttgaaaatgtccctgtgtgagttaactcatgctagtgt 169  Q
    ||||| ||||||||||| ||||| |||||||||||| |||  |||| | |||||||  |||||  |||||||| ||||| ||||||    
T  22199261 gaattttgctcttctcctaactcattttgctcattcccaaccaaacatctgaaaatacccctgcatgagttaattcatgttagtgt 22199176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 84 - 169
Target Start/End: Original strand, 22238560 - 22238645
Alignment:
Q  84 gaattctgctcttctcccaactcgttttgctcattctcaattaaacttttgaaaatgtccctgtgtgagttaactcatgctagtgt 169  Q
    ||||| ||||||||||| ||||| |||||||||||| |||  |||| | |||||||  |||||  |||||||| ||||| ||||||    
T  22238560 gaattttgctcttctcctaactcattttgctcattcccaaccaaacatctgaaaatacccctgcatgagttaattcatgttagtgt 22238645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 148 - 193
Target Start/End: Complemental strand, 30361601 - 30361556
Alignment:
Q  148 gtgagttaactcatgctagtgttaatctttgtgtgagttaacccac 193  Q
    ||||||||||||||||||||||||| | ||||||| ||||| ||||    
T  30361601 gtgagttaactcatgctagtgttaaaccttgtgtgtgttaagccac 30361556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 267
Target Start/End: Complemental strand, 11288356 - 11288320
Alignment:
Q  231 tgtaacagtccgatttttcgttagatttattttaatt 267  Q
    |||||||||| ||||||||| ||||||||||||||||    
T  11288356 tgtaacagtctgatttttcgctagatttattttaatt 11288320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 267
Target Start/End: Complemental strand, 15862809 - 15862773
Alignment:
Q  231 tgtaacagtccgatttttcgttagatttattttaatt 267  Q
    |||||||||||||||||| | ||||||||||||||||    
T  15862809 tgtaacagtccgatttttagctagatttattttaatt 15862773  T

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Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 267
Target Start/End: Complemental strand, 36025040 - 36025004
Alignment:
Q  231 tgtaacagtccgatttttcgttagatttattttaatt 267  Q
    |||||||||||||||||||| || |||||||||||||    
T  36025040 tgtaacagtccgatttttcgctatatttattttaatt 36025004  T

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Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 267
Target Start/End: Complemental strand, 36053563 - 36053527
Alignment:
Q  231 tgtaacagtccgatttttcgttagatttattttaatt 267  Q
    |||||||||||||||||| | ||||||||||||||||    
T  36053563 tgtaacagtccgatttttagctagatttattttaatt 36053527  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 189
Target Start/End: Original strand, 43148645 - 43148689
Alignment:
Q  145 tgtgtgagttaactcatgctagtgttaatctttgtgtgagttaac 189  Q
    ||||||| ||||||||||||||||||||||| || ||||||||||    
T  43148645 tgtgtgacttaactcatgctagtgttaatctctgcgtgagttaac 43148689  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 230 - 265
Target Start/End: Original strand, 20812857 - 20812892
Alignment:
Q  230 ctgtaacagtccgatttttcgttagatttattttaa 265  Q
    ||||||||| ||||||||||||||||||||||||||    
T  20812857 ctgtaacagcccgatttttcgttagatttattttaa 20812892  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 84 - 160
Target Start/End: Original strand, 40443378 - 40443450
Alignment:
Q  84 gaattctgctcttctcccaactcgttttgctcattctcaattaaacttttgaaaatgtccctgtgtgagttaactca 160  Q
    ||||| ||||||||| ||||| ||||||||||||| ||||  |||||||| ||||||    ||||||||||||||||    
T  40443378 gaattatgctcttcttccaacacgttttgctcattttcaaccaaacttttaaaaatg----tgtgtgagttaactca 40443450  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 86 - 189
Target Start/End: Complemental strand, 40443641 - 40443538
Alignment:
Q  86 attctgctcttctcccaactcgttttgctcattctcaattaaacttttgaaaatgtccctgtgtgagttaactcatgctagtgttaatctttgtgtgagt 185  Q
    ||||||||||||| |||||  ||| ||||||| | |||  ||||||||||||||| ||  | || ||||||||||||   |||||||| | |||||||||    
T  40443641 attctgctcttcttccaacatgttctgctcatccccaaccaaacttttgaaaatgccctcgcgtaagttaactcatgtaggtgttaatttctgtgtgagt 40443542  T
Q  186 taac 189  Q
    ||||    
T  40443541 taac 40443538  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 178
Target Start/End: Complemental strand, 542515 - 542422
Alignment:
Q  84 gaattctgctcttctcccaactcgttttgctcattctcaattaaacttttgaaaatgtccctgtgtgagttaactcatgctagtgttaatctttg 178  Q
    |||||||||||||  |||||||  |||||||| ||||||| | || |||| | |||   |||||||||||||||||| | |||||||||||||||    
T  542515 gaattctgctctttccccaactgattttgctcgttctcaactgaaattttcataatactcctgtgtgagttaactcacg-tagtgttaatctttg 542422  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 194
Target Start/End: Original strand, 32936886 - 32936932
Alignment:
Q  148 gtgagttaactcatgctagtgttaatctttgtgtgagttaacccacg 194  Q
    ||||||||||||||||||||||||| ||||| ||| ||||| |||||    
T  32936886 gtgagttaactcatgctagtgttaaactttgcgtgtgttaagccacg 32936932  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 150 - 195
Target Start/End: Complemental strand, 4787268 - 4787223
Alignment:
Q  150 gagttaactcatgctagtgttaatctttgtgtgagttaacccacgt 195  Q
    ||||||||||| |||||||||||||| | ||||||||||| |||||    
T  4787268 gagttaactcacgctagtgttaatctctatgtgagttaactcacgt 4787223  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 143 - 188
Target Start/End: Original strand, 17115809 - 17115854
Alignment:
Q  143 cctgtgtgagttaactcatgctagtgttaatctttgtgtgagttaa 188  Q
    |||| ||||||||||| |||||| ||| ||||||||||||||||||    
T  17115809 cctgcgtgagttaacttatgctactgtaaatctttgtgtgagttaa 17115854  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 267
Target Start/End: Original strand, 8871783 - 8871819
Alignment:
Q  231 tgtaacagtccgatttttcgttagatttattttaatt 267  Q
    |||||||| ||||||||| ||||||||||||||||||    
T  8871783 tgtaacagcccgatttttagttagatttattttaatt 8871819  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 267
Target Start/End: Complemental strand, 9296415 - 9296375
Alignment:
Q  227 aaactgtaacagtccgatttttcgttagatttattttaatt 267  Q
    |||||||||||| ||||||||| | ||||||||||||||||    
T  9296415 aaactgtaacagcccgatttttagctagatttattttaatt 9296375  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 267
Target Start/End: Complemental strand, 16733108 - 16733072
Alignment:
Q  231 tgtaacagtccgatttttcgttagatttattttaatt 267  Q
    |||||||||||||||||| | ||||||||||||||||    
T  16733108 tgtaacagtccgatttttagctagatttattttaatt 16733072  T

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Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 267
Target Start/End: Complemental strand, 30458801 - 30458765
Alignment:
Q  231 tgtaacagtccgatttttcgttagatttattttaatt 267  Q
    |||||||  ||||||||||||||||||||||||||||    
T  30458801 tgtaacaacccgatttttcgttagatttattttaatt 30458765  T

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Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 267
Target Start/End: Complemental strand, 34396195 - 34396159
Alignment:
Q  231 tgtaacagtccgatttttcgttagatttattttaatt 267  Q
    |||||||||||||||||| | ||||||||||||||||    
T  34396195 tgtaacagtccgatttttagctagatttattttaatt 34396159  T

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Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 267
Target Start/End: Original strand, 45458174 - 45458210
Alignment:
Q  231 tgtaacagtccgatttttcgttagatttattttaatt 267  Q
    |||||||| |||||||||| |||||||||||||||||    
T  45458174 tgtaacagcccgatttttcattagatttattttaatt 45458210  T

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Target: scaffold0335 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0335
Description:

Target: scaffold0335; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 228 - 267
Target Start/End: Complemental strand, 6925 - 6886
Alignment:
Q  228 aactgtaacagtccgatttttcgttagatttattttaatt 267  Q
    ||||||||||||||||||||| | ||||||||||||||||    
T  6925 aactgtaacagtccgatttttagctagatttattttaatt 6886  T

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Target: scaffold0107 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 230 - 267
Target Start/End: Complemental strand, 32200 - 32163
Alignment:
Q  230 ctgtaacagtccgatttttcgttagatttattttaatt 267  Q
    ||||||||||||||||||| | ||||||||||||||||    
T  32200 ctgtaacagtccgatttttagctagatttattttaatt 32163  T

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Target: scaffold0293 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0293
Description:

Target: scaffold0293; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 267
Target Start/End: Original strand, 5515 - 5551
Alignment:
Q  231 tgtaacagtccgatttttcgttagatttattttaatt 267  Q
    |||||||| |||||||||| |||||||||||||||||    
T  5515 tgtaacagcccgatttttcattagatttattttaatt 5551  T

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Target: scaffold0260 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0260
Description:

Target: scaffold0260; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 267
Target Start/End: Complemental strand, 9243 - 9207
Alignment:
Q  231 tgtaacagtccgatttttcgttagatttattttaatt 267  Q
    |||||||| ||||||||| ||||||||||||||||||    
T  9243 tgtaacagcccgatttttagttagatttattttaatt 9207  T

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Target: scaffold0132 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0132
Description:

Target: scaffold0132; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 267
Target Start/End: Complemental strand, 14393 - 14357
Alignment:
Q  231 tgtaacagtccgatttttcgttagatttattttaatt 267  Q
    |||||||| ||||||||| ||||||||||||||||||    
T  14393 tgtaacagcccgatttttagttagatttattttaatt 14357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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