View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14573_low_19 (Length: 211)
Name: NF14573_low_19
Description: NF14573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14573_low_19 |
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| [»] scaffold0103 (1 HSPs) |
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Alignment Details
Target: scaffold0103 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: scaffold0103
Description:
Target: scaffold0103; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 17 - 122
Target Start/End: Original strand, 5579 - 5684
Alignment:
| Q |
17 |
aatggttgttgatgtctttgcttttgattgtagtttcatannnnnnncagtatagttttcttctctttcctgcggtttgttcttatgcaagtagaaagct |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
5579 |
aatggttgttgatgtctttgcttttgattgtagtttcatatttttttcagtatagttttcttctctttcctgcagtttgttcttatgcaagtagaaagct |
5678 |
T |
|
| Q |
117 |
ttgtga |
122 |
Q |
| |
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|||||| |
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| T |
5679 |
ttgtga |
5684 |
T |
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Target: chr7 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 17 - 122
Target Start/End: Original strand, 12808154 - 12808259
Alignment:
| Q |
17 |
aatggttgttgatgtctttgcttttgattgtagtttcatannnnnnncagtatagttttcttctctttcctgcggtttgttcttatgcaagtagaaagct |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
12808154 |
aatggttgttgatgtctttgcttttgattgtagtttcatatttttttcagtatagttttcttctctttcctgctgtttgttcttatgcaagtagaaagct |
12808253 |
T |
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| Q |
117 |
ttgtga |
122 |
Q |
| |
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|||||| |
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| T |
12808254 |
ttgtga |
12808259 |
T |
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Target: chr6 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 17 - 122
Target Start/End: Complemental strand, 2634430 - 2634325
Alignment:
| Q |
17 |
aatggttgttgatgtctttgcttttgattgtagtttcatannnnnnncagtatagttttcttctctttcctgcggtttgttcttatgcaagtagaaagct |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
2634430 |
aatggttgttgatgtctttgcttttgattgtagtttcatatttttttcagtatagttttcttctctttcctgcagtttgttcttatgcaagtagaaagct |
2634331 |
T |
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| Q |
117 |
ttgtga |
122 |
Q |
| |
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|||||| |
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|
| T |
2634330 |
ttgtga |
2634325 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 17 - 114
Target Start/End: Complemental strand, 12084108 - 12084006
Alignment:
| Q |
17 |
aatggttgttgatgtctttgcttttgattgtagtttcatannnnnnn-----cagtatagttttcttctctttcctgcggtttgttcttatgcaagtaga |
111 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
12084108 |
aatggttgttgatgtctttgcttttgattgtagtttcattttttttttttttcagtatagttttcttttctttcctgcggtttgttcttatgcaagtaga |
12084009 |
T |
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| Q |
112 |
aag |
114 |
Q |
| |
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||| |
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|
| T |
12084008 |
aag |
12084006 |
T |
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Target: chr5 (Bit Score: 54; Significance: 3e-22; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 17 - 114
Target Start/End: Complemental strand, 4807389 - 4807291
Alignment:
| Q |
17 |
aatggttgttgatgtctttgcttttgattgtagtttcatannnnnnncagtatagttttcttctctttcctgcggtttgttc-ttatgcaagtagaaag |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| ||||||||||||| ||||||| |||||||| |
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| T |
4807389 |
aatggttgttgatgtctttgcttttgattgtagtttcatcttttttccagtatagttttcttttctttgctgcggtttgttctttatgcaggtagaaag |
4807291 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 17 - 119
Target Start/End: Original strand, 21837836 - 21837939
Alignment:
| Q |
17 |
aatggttgttgatgtctttgcttttgattgtagtttcatannnnnnncagtatagttttcttctctttcctgcggtttgttc-ttatgcaagtagaaagc |
115 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||| ||||||||||||||| ||||| ||||||||||||| ||||||| |||||||| |
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| T |
21837836 |
aatggttgttgatgtctttgcttttggttgtagtttcatcttttttccagtatagttttcttttctttgctgcggtttgttctttatgcaggtagaaagt |
21837935 |
T |
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| Q |
116 |
tttg |
119 |
Q |
| |
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|||| |
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|
| T |
21837936 |
tttg |
21837939 |
T |
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Target: chr8 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 64 - 114
Target Start/End: Complemental strand, 27261563 - 27261513
Alignment:
| Q |
64 |
cagtatagttttcttctctttcctgcggtttgttcttatgcaagtagaaag |
114 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
27261563 |
cagtatagttttcttttctttcctgcggtttgttcttatgcaagtagaaag |
27261513 |
T |
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Target: chr4 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 17 - 106
Target Start/End: Complemental strand, 27897114 - 27897025
Alignment:
| Q |
17 |
aatggttgttgatgtctttgcttttgattgtagtttcatannnnnnncagtatagttttcttctctttcctgcggtttgttcttatgcaa |
106 |
Q |
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||||||||||||||||| |||||||||| |||| |||||| |||||||||||||| |||||||||||||||||| |||||||| |
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| T |
27897114 |
aatggttgttgatgtctctgcttttgatcgtaggttcatattttttttagtatagttttcttttctttcctgcggtttgtttttatgcaa |
27897025 |
T |
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