View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14573_low_3 (Length: 424)
Name: NF14573_low_3
Description: NF14573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14573_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 334; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 6 - 407
Target Start/End: Complemental strand, 12096427 - 12096026
Alignment:
| Q |
6 |
aagaatatcccaaaaacaaccatccatcgtgtcaacttccttgagatagatggcgctgatgatcttgtcggtacaatcccgcccctcatcgctgatctac |
105 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |
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| T |
12096427 |
aagaaaatcccaaaaacaaccatccatcgtgtcaacttccttgagatagatggcgctgatgatcttgtcggtacaatcccgccactcatcgccgatctac |
12096328 |
T |
|
| Q |
106 |
cttacctcgagaccctcattttccgcctccttcctaacctcactggtcctattcctcaagccattgctagacttcctcaccttaaatttgtccttcttaa |
205 |
Q |
| |
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|||||||||||||||||||||| |||||||| |||||||| || ||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||| |
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| T |
12096327 |
cttacctcgagaccctcatttttcgcctcctccctaacctaacaggtcctattcctcaagccattgcaagactgcctcaccttaaatttgtcctccttaa |
12096228 |
T |
|
| Q |
206 |
ttggaacagcctaactggtcctatccctgattactttagcaaactccccaatttagccaccttagggcttaataacaaccatttaaccggtccaattccc |
305 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
12096227 |
ttggaacaacctaactggtcctatccctgattactttagcaaacttaccaatttagccaccttagggcttaataacaaccaattaaccggtccaattcct |
12096128 |
T |
|
| Q |
306 |
gcttacctcggccaccttcctaaactccaaggactagacttgtacgacaaccatttaaccggtccaataccggacagcttcggatcattcaaggctggtt |
405 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
12096127 |
gcttacctcggccgccttcctaaactccaaggactagacttgtacgacaaccatttaaccggtccaataccggacagcttcggatcattcaaggccggtt |
12096028 |
T |
|
| Q |
406 |
ct |
407 |
Q |
| |
|
|| |
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|
| T |
12096027 |
ct |
12096026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 6 - 407
Target Start/End: Complemental strand, 12079787 - 12079386
Alignment:
| Q |
6 |
aagaatatcccaaaaacaaccatccatcgtgtcaacttccttgagatagatggcgctgatgatcttgtcggtacaatcccgcccctcatcgctgatctac |
105 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||| ||||||| |
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| T |
12079787 |
aagaaaatcccaaaaacaaccatccatcgtgtcaacttccttgagatagatggtgctgatgatcttgtcggtacaataccgccactcatcgccgatctac |
12079688 |
T |
|
| Q |
106 |
cttacctcgagaccctcattttccgcctccttcctaacctcactggtcctattcctcaagccattgctagacttcctcaccttaaatttgtccttcttaa |
205 |
Q |
| |
|
|||||||||||||||||||||| |||||||| |||||||| || ||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||| |
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| T |
12079687 |
cttacctcgagaccctcattttacgcctcctacctaacctaacaggtcctattcctcaagccattgcaagactgcctcaccttaaatttgtcctccttaa |
12079588 |
T |
|
| Q |
206 |
ttggaacagcctaactggtcctatccctgattactttagcaaactccccaatttagccaccttagggcttaataacaaccatttaaccggtccaattccc |
305 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
12079587 |
ttggaacaacctaactggtcctatccctgattactttagcaaactaaccaatttagccaccttagggcttaataacaaccaattaaccggtccaattcca |
12079488 |
T |
|
| Q |
306 |
gcttacctcggccaccttcctaaactccaaggactagacttgtacgacaaccatttaaccggtccaataccggacagcttcggatcattcaaggctggtt |
405 |
Q |
| |
|
||||||||||||| |||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
12079487 |
gcttacctcggccgccttcctaaactacaaggactaaacttgtacgacaaccatttaaccggtccaataccggacagcttcggatcattcaaggccggtt |
12079388 |
T |
|
| Q |
406 |
ct |
407 |
Q |
| |
|
|| |
|
|
| T |
12079387 |
ct |
12079386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 6 - 328
Target Start/End: Original strand, 1248839 - 1249161
Alignment:
| Q |
6 |
aagaatatcccaaaaacaaccatccatcgtgtcaacttccttgagatagatggcgctgatgatcttgtcggtacaatcccgcccctcatcgctgatctac |
105 |
Q |
| |
|
||||| |||||||||||||| ||| | |||||||||||||| ||||| || || |||||||| || |||||||| ||||| || ||||| ||||| |||| |
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| T |
1248839 |
aagaaaatcccaaaaacaacaatctaccgtgtcaacttcctcgagatcgacggtgctgatgacctcgtcggtacgatccccccactcattgctgacctac |
1248938 |
T |
|
| Q |
106 |
cttacctcgagaccctcattttccgcctccttcctaacctcactggtcctattcctcaagccattgctagacttcctcaccttaaatttgtccttcttaa |
205 |
Q |
| |
|
| ||||| ||||||||||| |||||| ||| ||||||||||| |||||||| |||||||||||||| | ||||||||||||||| |||||||| ||||| |
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|
| T |
1248939 |
catacctggagaccctcatattccgcaacctccctaacctcaccggtcctatccctcaagccattgcgaaacttcctcaccttaactttgtcctccttaa |
1249038 |
T |
|
| Q |
206 |
ttggaacagcctaactggtcctatccctgattactttagcaaactccccaatttagccaccttagggcttaataacaaccatttaaccggtccaattccc |
305 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||| |||| |
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|
| T |
1249039 |
ctggaacagcctaaccggtcctatccctgattactttagcaagctcaccaatttagccactttagggcttaataacaaccatttaaccggtcgggttccg |
1249138 |
T |
|
| Q |
306 |
gcttacctcggccaccttcctaa |
328 |
Q |
| |
|
||||||||||||| ||||||||| |
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|
| T |
1249139 |
gcttacctcggccgccttcctaa |
1249161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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