View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14573_low_4 (Length: 399)

Name: NF14573_low_4
Description: NF14573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14573_low_4
NF14573_low_4
[»] chr5 (9 HSPs)
chr5 (19-188)||(5539945-5540115)
chr5 (210-313)||(5540177-5540280)
chr5 (212-352)||(36836757-36836900)
chr5 (212-377)||(14043194-14043360)
chr5 (212-331)||(10023784-10023903)
chr5 (338-383)||(5540127-5540172)
chr5 (331-380)||(10032029-10032078)
chr5 (336-383)||(36836912-36836959)
chr5 (219-271)||(35467822-35467874)
[»] chr8 (5 HSPs)
chr8 (212-380)||(15552330-15552498)
chr8 (201-380)||(21356053-21356232)
chr8 (212-379)||(1236148-1236318)
chr8 (205-380)||(17915070-17915245)
chr8 (212-380)||(31498478-31498649)
[»] chr7 (1 HSPs)
chr7 (212-380)||(28164805-28164973)
[»] chr2 (3 HSPs)
chr2 (219-379)||(32742102-32742262)
chr2 (212-380)||(37904559-37904726)
chr2 (219-371)||(12314161-12314311)
[»] chr1 (2 HSPs)
chr1 (212-380)||(39487529-39487697)
chr1 (221-380)||(931775-931938)
[»] chr6 (1 HSPs)
chr6 (201-378)||(647794-647970)
[»] chr4 (6 HSPs)
chr4 (212-380)||(53189441-53189611)
chr4 (212-376)||(13938765-13938930)
chr4 (212-380)||(34413231-34413401)
chr4 (212-323)||(49228233-49228347)
chr4 (327-380)||(49228840-49228893)
chr4 (219-271)||(15666642-15666694)
[»] chr3 (2 HSPs)
chr3 (219-383)||(43424001-43424169)
chr3 (221-382)||(52581999-52582160)


Alignment Details
Target: chr5 (Bit Score: 143; Significance: 5e-75; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 19 - 188
Target Start/End: Original strand, 5539945 - 5540115
Alignment:
Q  19 aaacaaggtccccttgtctggcaagtccaagccaattagtgtatgcatgatatcacaataaattttgcataaactatcgattgt-gcttttggaaatcac 117  Q
    |||||||||||   |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  5539945 aaacaaggtcctagtgtccggcaagtccaagccaattagtgtatgcatgatatcacaataaattttgcataaactatcgattgtagcttttggaaatcac 5540044  T
Q  118 aataaatcatcatgattatgcaatatccaccgtaatacctaatactccattcggtctcaaatgtaagaaac 188  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  5540045 aataaatcatcatgattatgcaatatccaccgtaatacctaatactccatccggtctcaaatgtaagaaac 5540115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 210 - 313
Target Start/End: Complemental strand, 5540280 - 5540177
Alignment:
Q  210 ttaaatatgagaaaaagtatagtaaaatgaacctattaaatgccacaatttcaagtttacccacattaaactcacttcattaatgtctttactacttcaa 309  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  5540280 ttaaatatgagaaaaagtatagtaaaatgaacctattaaatgccacaattccaagtttacccacattaaacccacttcattaatgtctttactacttcaa 5540181  T
Q  310 gaca 313  Q
    ||||    
T  5540180 gaca 5540177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 212 - 352
Target Start/End: Original strand, 36836757 - 36836900
Alignment:
Q  212 aaatatgagaaaaagtatagtaaaatgaacctattaaatgccacaatttcaagtttacccacattaaactcact---tcattaatgtctttactacttca 308  Q
    |||||| |||||| |||||||||||||||||||||||||||||||||| ||||||||||| || ||||| ||||   ||||||||||||||||||||  |    
T  36836757 aaatataagaaaatgtatagtaaaatgaacctattaaatgccacaattccaagtttaccctcactaaacccacttcatcattaatgtctttactactcta 36836856  T
Q  309 agacaagggtaaaataagaaaaatatcactttttataataactt 352  Q
    |||||||||||||||   ||||||||||||||||||||| ||||    
T  36836857 agacaagggtaaaattgaaaaaatatcactttttataatgactt 36836900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 212 - 377
Target Start/End: Complemental strand, 14043360 - 14043194
Alignment:
Q  212 aaatatgagaaaaagtatagtaaaatgaacctattaaatgccacaatttcaagtttacccacattaaactcacttcat---taatgtctttactacttca 308  Q
    |||||| ||||||| ||||| |||||||||  ||||||||| ||||||| |||||||||| |||||||||||||||||   ||||||||  |||||| ||    
T  14043360 aaatataagaaaaaatatagcaaaatgaacaaattaaatgcgacaattttaagtttaccctcattaaactcacttcatcattaatgtct--actactcca 14043263  T
Q  309 agacaagggtaaaataagaaaaatatcactttttataataacttaaatgtgatcaatccactttcttaa 377  Q
    |||||||||||||||   |||||||||||||||||||||  ||||||| || |||||||||||||||||    
T  14043262 agacaagggtaaaattgaaaaaatatcactttttataatgtcttaaatatggtcaatccactttcttaa 14043194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 212 - 331
Target Start/End: Original strand, 10023784 - 10023903
Alignment:
Q  212 aaatatgagaaaaagtatagtaaaatgaacctattaaatgccacaatttcaagtttacccacattaaactcacttcattaa-tgtctttactacttcaag 310  Q
    |||||| ||||||| ||||||||| |||||||||||| || |||||||||||||||||||  ||||||| ||| ||||||| | | ||||||||| ||||    
T  10023784 aaatataagaaaaattatagtaaa-tgaacctattaagtgtcacaatttcaagtttacccttattaaacccacctcattaattttttttactactccaag 10023882  T
Q  311 acaagggtaaaataagaaaaa 331  Q
    ||||||||||||| |||||||    
T  10023883 acaagggtaaaattagaaaaa 10023903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 338 - 383
Target Start/End: Complemental strand, 5540172 - 5540127
Alignment:
Q  338 tttttataataacttaaatgtgatcaatccactttcttaatatatg 383  Q
    |||||||||| |||||||||||||||||||||||||||||||||||    
T  5540172 tttttataatgacttaaatgtgatcaatccactttcttaatatatg 5540127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 331 - 380
Target Start/End: Original strand, 10032029 - 10032078
Alignment:
Q  331 atatcactttttataataacttaaatgtgatcaatccactttcttaatat 380  Q
    ||||||||||||||||| |||||||||||||||||| |||||||||||||    
T  10032029 atatcactttttataatgacttaaatgtgatcaatctactttcttaatat 10032078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 336 - 383
Target Start/End: Original strand, 36836912 - 36836959
Alignment:
Q  336 actttttataataacttaaatgtgatcaatccactttcttaatatatg 383  Q
    |||||||||||| |||||||| || |||||||||||||||||||||||    
T  36836912 actttttataatgacttaaatatggtcaatccactttcttaatatatg 36836959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 219 - 271
Target Start/End: Complemental strand, 35467874 - 35467822
Alignment:
Q  219 agaaaaagtatagtaaaatgaacctattaaatgccacaatttcaagtttaccc 271  Q
    ||||||||||||||||||  |||||||||||||| || ||| ||| |||||||    
T  35467874 agaaaaagtatagtaaaagcaacctattaaatgctactattccaattttaccc 35467822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 129; Significance: 1e-66; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 212 - 380
Target Start/End: Original strand, 15552330 - 15552498
Alignment:
Q  212 aaatatgagaaaaagtatagtaaaatgaacctattaaatgccacaatttcaagtttacccacattaaactcacttcattaatgtctttactacttcaaga 311  Q
    |||||| |||||||||||||||||||||||||||||||||| |||||| ||||||||||| |||||||| ||| ||||||||||||||||||||||||||    
T  15552330 aaatataagaaaaagtatagtaaaatgaacctattaaatgcaacaattccaagtttaccctcattaaacccacctcattaatgtctttactacttcaaga 15552429  T
Q  312 caagggtaaaataagaaaaatatcactttttataataacttaaatgtgatcaatccactttcttaatat 380  Q
    |||||||||||| ||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||    
T  15552430 caagggtaaaattagaaaaatatcactttttacaatgacttaaatgtggtcaatccactttcttaatat 15552498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 201 - 380
Target Start/End: Original strand, 21356053 - 21356232
Alignment:
Q  201 ttgatggttttaaatatgagaaaaagtatagtaaaatgaacctattaaatgccacaatttcaagtttacccacattaaactcacttcattaatgtcttta 300  Q
    |||||||| | |||||| ||||||||||||||||||| || |||||||||||||||||||||| ||||||| |||||||||||| ||| |||||||||||    
T  21356053 ttgatggtctcaaatataagaaaaagtatagtaaaataaatctattaaatgccacaatttcaaatttaccctcattaaactcacctcaataatgtcttta 21356152  T
Q  301 ctacttcaagacaagggtaaaataagaaaaatatcactttttataataacttaaatgtgatcaatccactttcttaatat 380  Q
    ||||| ||||||||||||||| | |||||||| |||| ||||||||| |||||||| || ||||||||||||||||||||    
T  21356153 ctactccaagacaagggtaaatttagaaaaatttcacattttataatgacttaaatatggtcaatccactttcttaatat 21356232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 212 - 379
Target Start/End: Complemental strand, 1236318 - 1236148
Alignment:
Q  212 aaatatgagaaaaagtatagtaaaatgaacctattaaatgccacaatttcaagtttacccacattaaactcacttcat---taatgtctttactacttca 308  Q
    |||||| ||||||||||||||||||||||||||||||||| ||||||| ||| ||||||| |||||||||||||||||   ||| |||||||||||| ||    
T  1236318 aaatataagaaaaagtatagtaaaatgaacctattaaatgtcacaattccaaatttaccctcattaaactcacttcatcattaaggtctttactactcca 1236219  T
Q  309 agacaagggtaaaataagaaaaatatcactttttataataacttaaatgtgatcaatccactttcttaata 379  Q
    |||||||||||||||   ||||||||||||||||||||| ||||||||||| |||||||||||||||||||    
T  1236218 agacaagggtaaaattgaaaaaatatcactttttataatgacttaaatgtggtcaatccactttcttaata 1236148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 205 - 380
Target Start/End: Original strand, 17915070 - 17915245
Alignment:
Q  205 tggttttaaatatgagaaaaagtatagtaaaatgaacctattaaatgccacaatttcaagtttacccacattaaactcacttcattaatgtctttactac 304  Q
    |||| |||||||| |||||||||||||||||| ||| ||||||||||||||||||  | |||||||| |||||||| ||| ||||| |||| ||||||||    
T  17915070 tggtcttaaatataagaaaaagtatagtaaaacgaatctattaaatgccacaattctaggtttaccctcattaaacccacctcattgatgtatttactac 17915169  T
Q  305 ttcaagacaagggtaaaataagaaaaatatcactttttataataacttaaatgtgatcaatccactttcttaatat 380  Q
    | ||||||||||||||||  ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||    
T  17915170 tccaagacaagggtaaaactagaaaaatatcactttttataatgacttaaatgtggtcaatccactttcttaatat 17915245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 212 - 380
Target Start/End: Complemental strand, 31498649 - 31498478
Alignment:
Q  212 aaatatgagaaaaagtatagtaaaatgaacctattaaatgccacaatttcaagtttacccacattaaactcactt---cattaatgtctttactacttca 308  Q
    |||||| ||||||||||||||||||||||||||||||||| |||||||  |||||||||| ||||||||||||||   ||||||||||||||||||| ||    
T  31498649 aaatataagaaaaagtatagtaaaatgaacctattaaatgtcacaattcaaagtttaccctcattaaactcactttatcattaatgtctttactactcca 31498550  T
Q  309 agacaagggtaaaataagaaaaatatcactttttataataacttaaatgtgatcaatccactttcttaatat 380  Q
    | | |||||||||||   ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||    
T  31498549 aaaaaagggtaaaattgaaaaaatatcactttttataatgacttaaatgtggtcaatccactttcttaatat 31498478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 125; Significance: 3e-64; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 212 - 380
Target Start/End: Complemental strand, 28164973 - 28164805
Alignment:
Q  212 aaatatgagaaaaagtatagtaaaatgaacctattaaatgccacaatttcaagtttacccacattaaactcacttcattaatgtctttactacttcaaga 311  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||| ||  ||||||| |||||||  ||| ||||||||||||||||||||||||||    
T  28164973 aaatataagaaaaagtatagtaaaatgaacctattaaatgccacaattccagttttaccctcattaaatccacctcattaatgtctttactacttcaaga 28164874  T
Q  312 caagggtaaaataagaaaaatatcactttttataataacttaaatgtgatcaatccactttcttaatat 380  Q
    |||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||    
T  28164873 caagggtaaaattagaaaaatatcactttttataatgacttaaatgtggtcaatccactttcttaatat 28164805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 121; Significance: 7e-62; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 219 - 379
Target Start/End: Complemental strand, 32742262 - 32742102
Alignment:
Q  219 agaaaaagtatagtaaaatgaacctattaaatgccacaatttcaagtttacccacattaaactcacttcattaatgtctttactacttcaagacaagggt 318  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||  |||||||||||||||||||||||| ||||||||||||    
T  32742262 agaaaaagtatagtaaaatgaacctattaaatgccactatttcaagtttaccctcattaaaaccacttcattaatgtctttactactccaagacaagggt 32742163  T
Q  319 aaaataagaaaaatatcactttttataataacttaaatgtgatcaatccactttcttaata 379  Q
    ||||| |||||||||  |||||||||||| ||||||||||| |||||||||||||||||||    
T  32742162 aaaattagaaaaataatactttttataatgacttaaatgtggtcaatccactttcttaata 32742102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 212 - 380
Target Start/End: Original strand, 37904559 - 37904726
Alignment:
Q  212 aaatatgagaaaaagtatagtaaaatgaacctattaaatgccacaatttcaagtttacccacattaaactcacttcattaatgtctttactacttcaaga 311  Q
    |||||| |||||||||||| |||||||||| |||||||||||||||||| |||||||||| |||||||||||| | ||||||||| |||||||| |||||    
T  37904559 aaatataagaaaaagtataataaaatgaacttattaaatgccacaattttaagtttaccctcattaaactcaccttattaatgtcattactactccaaga 37904658  T
Q  312 caagggtaaaataagaaaaatatcactttttataataacttaaatgtgatcaatccactttcttaatat 380  Q
    |||||||||||    ||||||||||| ||||||||| | ||||||||| ||||||||||||||||||||    
T  37904659 caagggtaaaactgaaaaaatatcac-ttttataatgatttaaatgtggtcaatccactttcttaatat 37904726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 219 - 371
Target Start/End: Complemental strand, 12314311 - 12314161
Alignment:
Q  219 agaaaaagtatagtaaaatgaacctattaaatgccacaatttcaagtttacccacattaaactcacttcattaatgtctttactacttcaagacaagggt 318  Q
    |||||||||| |||||| ||||| | ||||||| ||||||| ||| ||||||| |||||||  |||||    ||||||||||||| | |||| |||||||    
T  12314311 agaaaaagtacagtaaa-tgaactttttaaatgtcacaattccaaatttaccctcattaaaaccactt----aatgtctttactagtccaagtcaagggt 12314217  T
Q  319 aaaataagaaaaatatca---ctttttataataacttaaatgtgatcaatccactt 371  Q
    ||||| |||||||||  |   ||||||||||| | ||||||||| |||||||||||    
T  12314216 aaaattagaaaaatactaatactttttataatgatttaaatgtggtcaatccactt 12314161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 113; Significance: 4e-57; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 212 - 380
Target Start/End: Complemental strand, 39487697 - 39487529
Alignment:
Q  212 aaatatgagaaaaagtatagtaaaatgaacctattaaatgccacaatttcaagtttacccacattaaactcacttcattaatgtctttactacttcaaga 311  Q
    |||||| ||||||| ||||||||||||||||||||||||| || |||| ||| ||||||| |||||||| ||  |||||||||||||||||||| ||| |    
T  39487697 aaatataagaaaaaatatagtaaaatgaacctattaaatgtcagaattccaaatttaccctcattaaacacatctcattaatgtctttactactccaaaa 39487598  T
Q  312 caagggtaaaataagaaaaatatcactttttataataacttaaatgtgatcaatccactttcttaatat 380  Q
    |||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  39487597 caagggtaaaattagaaaaatatcactttttataatgacttaaatgtgatcaatccactttcttaatat 39487529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 221 - 380
Target Start/End: Original strand, 931775 - 931938
Alignment:
Q  221 aaaaagtatagtaaaatgaacctattaaatgccacaatttcaagtttacccacattaaactcactt---cattaatgtctttactacttcaagacaaggg 317  Q
    |||||||||| |||| |||| ||||||||||||||||||  |||||||||| ||||||| ||||||   ||||||||||||||||||| |||||||||||    
T  931775 aaaaagtatactaaattgaatctattaaatgccacaattctaagtttaccctcattaaagtcactttatcattaatgtctttactactccaagacaaggg 931874  T
Q  318 taaaataagaaaa-atatcactttttataataacttaaatgtgatcaatccactttcttaatat 380  Q
    ||||||   |||| ||||||||||||||||| |||||||||||||||||| |||||||||||||    
T  931875 taaaattgcaaaaaatatcactttttataatgacttaaatgtgatcaatctactttcttaatat 931938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 98; Significance: 4e-48; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 201 - 378
Target Start/End: Complemental strand, 647970 - 647794
Alignment:
Q  201 ttgatggttttaaatatgagaaaaagtatagtaaaatgaacctattaaatgccacaatttcaagtttacccacattaaactcacttcattaatgtcttta 300  Q
    |||||||| | |||||| ||||||||||||||||||||||||||||||||||||| ||| || |||||||| |||||||  |||||||||||||||||||    
T  647970 ttgatggtctcaaatataagaaaaagtatagtaaaatgaacctattaaatgccactattccatgtttaccctcattaaaaccacttcattaatgtcttta 647871  T
Q  301 ctacttcaagacaagggtaaaataagaaaaatatcactttttataataacttaaatgtgatcaatccactttcttaat 378  Q
    ||||||||||||||| ||||||| | |||||||  || ||||||||| ||||||||||  |||||||||||| |||||    
T  647870 ctacttcaagacaagagtaaaatta-aaaaataataccttttataatgacttaaatgtagtcaatccacttttttaat 647794  T

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Target: chr4 (Bit Score: 94; Significance: 9e-46; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 212 - 380
Target Start/End: Complemental strand, 53189611 - 53189441
Alignment:
Q  212 aaatatgagaaaaagtatagtaaaatgaacctattaaatgccacaatttcaagtttacccacattaaactcact---tcattaatgtctttactacttca 308  Q
    |||||| ||||||||||||||||||||||||||||||||||| |||| | |||||||||| |||||||| ||||   ||||||| |||||||||||| ||    
T  53189611 aaatataagaaaaagtatagtaaaatgaacctattaaatgccgcaatatgaagtttaccctcattaaacccacttcatcattaacgtctttactactcca 53189512  T
Q  309 agacaagggtaaaataagaaaaatatcactttttataataacttaaatgtgatcaatccactttcttaatat 380  Q
     ||||||||||||||  |||||| ||||| ||||||||| ||||||||||| ||||||||||||||||||||    
T  53189511 ggacaagggtaaaattggaaaaacatcac-ttttataatgacttaaatgtggtcaatccactttcttaatat 53189441  T

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Target: chr4; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 212 - 376
Target Start/End: Complemental strand, 13938930 - 13938765
Alignment:
Q  212 aaatatgagaaaaagtatagtaaaatgaacctattaaatgccacaatttcaagtttacccacattaaactcacttca---ttaatgtctttactacttca 308  Q
    |||||| ||||||||||||||||||||||||||||||||||||| ||  ||||||||||| |||||||| |||||||   ||||||||| ||||||| ||    
T  13938930 aaatataagaaaaagtatagtaaaatgaacctattaaatgccactatcccaagtttaccctcattaaacccacttcatcgttaatgtctctactactaca 13938831  T
Q  309 agacaagggtaaaataagaaaaatatcactttttataataacttaaatgtgatcaatccactttctta 376  Q
    |||||||||||||||  ||||||||||||  |||||||| ||||||||||| |||||||| |||||||    
T  13938830 agacaagggtaaaattggaaaaatatcac--tttataattacttaaatgtggtcaatccattttctta 13938765  T

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Target: chr4; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 212 - 380
Target Start/End: Original strand, 34413231 - 34413401
Alignment:
Q  212 aaatatgagaaaaagtatagtaaaatgaacctattaaatgccacaatttcaagtttacccacattaaactcact---tcattaatgtctttactacttca 308  Q
    |||||| ||||||| ||||||||||||||||||||||||||||||||| |||||||| || |||||||| ||||   ||||||||||||||||| || ||    
T  34413231 aaatataagaaaaaatatagtaaaatgaacctattaaatgccacaattccaagtttatcctcattaaacccacttcatcattaatgtctttactgctcca 34413330  T
Q  309 agacaagggtaaaataagaaaaatatcactttttataataacttaaatgtgatcaatccactttcttaatat 380  Q
    | |||| |||| |||  ||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||    
T  34413331 aaacaatggtataat-tgaaaaatattactttttataatgacttaaatgtggtcaatccactttcttaatat 34413401  T

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Target: chr4; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 212 - 323
Target Start/End: Original strand, 49228233 - 49228347
Alignment:
Q  212 aaatatgagaaaaagtatagtaaaatgaacctattaaatgccacaatttcaagtttacccacattaaactcact---tcattaatgtctttactacttca 308  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||| ||||   |||||||| ||||||||||| ||    
T  49228233 aaatataagaaaaagtatagtaaaatgaacctattaaatgccacaattccaattttaccctcattaaacccacttcatcattaatatctttactactcca 49228332  T
Q  309 agacaagggtaaaat 323  Q
    | |||| ||||||||    
T  49228333 aaacaaaggtaaaat 49228347  T

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Target: chr4; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 327 - 380
Target Start/End: Original strand, 49228840 - 49228893
Alignment:
Q  327 aaaaatatcactttttataataacttaaatgtgatcaatccactttcttaatat 380  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  49228840 aaaaatatcactttttataataacttaaatgtggtcaatccactttcttaatat 49228893  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 219 - 271
Target Start/End: Complemental strand, 15666694 - 15666642
Alignment:
Q  219 agaaaaagtatagtaaaatgaacctattaaatgccacaatttcaagtttaccc 271  Q
    ||||||||||||||||||  |||||| ||||||| || ||||||| |||||||    
T  15666694 agaaaaagtatagtaaaagcaacctaataaatgctactatttcaattttaccc 15666642  T

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Target: chr3 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 219 - 383
Target Start/End: Complemental strand, 43424169 - 43424001
Alignment:
Q  219 agaaaaagtatagtaaaatgaacctattaaatgccacaatttcaagtttacccacattaaactcact---tcattaatgtctttactacttcaagacaag 315  Q
    ||||||| ||||||||||||||||||||||||| ||||||| ||| |||||||  ||||||| ||||   |||||||| |||||||||||  |||||||     
T  43424169 agaaaaaatatagtaaaatgaacctattaaatgacacaattccaattttaccctaattaaacccacttcatcattaatttctttactactctaagacaat 43424070  T
Q  316 ggtaaaataagaaaaatatcactttttataataacttaaatgtgatcaatccac--tttcttaatatatg 383  Q
    ||||||||   ||||||||||||||||||||| | || |||||| ||| |||||  ||||||||||||||    
T  43424069 ggtaaaattgaaaaaatatcactttttataatgaatt-aatgtggtcattccacgttttcttaatatatg 43424001  T

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Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 221 - 382
Target Start/End: Complemental strand, 52582160 - 52581999
Alignment:
Q  221 aaaaagtatagtaaaatgaacctattaaatgccacaatttcaagtttacccacattaaactcacttcattaatgtctttactacttcaagacaagggtaa 320  Q
    ||||||||| ||||||||||  |||||||||| | ||||| ||||| | |   || |||||||  ||||||||||||||||||||  |||| ||| ||||    
T  52582160 aaaaagtatcgtaaaatgaatttattaaatgcaataattttaagttcatctttatcaaactcatctcattaatgtctttactactgtaagataagagtaa 52582061  T
Q  321 aataagaaaaatatcactttttataataacttaaatgtgatcaatccactttcttaatatat 382  Q
    ||| | |||||||| |||||||||||| |||||||| || ||||| ||||||||||||||||    
T  52582060 aattaaaaaaatataactttttataatgacttaaatatggtcaattcactttcttaatatat 52581999  T

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