View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14573_low_5 (Length: 397)
Name: NF14573_low_5
Description: NF14573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14573_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 311; Significance: 1e-175; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 10 - 381
Target Start/End: Original strand, 15873603 - 15873974
Alignment:
| Q |
10 |
tcgaagaaaataaggtgtgacgtcattgaacnnnnnnntaggaagccttagttctccattaaaccatttagacttgaacgaaatgttactccagttccac |
109 |
Q |
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| T |
15873603 |
tcgaaaaaaataaggtgtgacgtcattgaacaaaaaaataggaagccttagttctccattaaaccatttagacgtgaacgaaatgttactccagttccac |
15873702 |
T |
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| Q |
110 |
tcatccgtcttatttgctaccactcgaattcctgctgtctttagatcccgtatgctcttataagtattccaattcaaattaatttcttcctcatcaatat |
209 |
Q |
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| T |
15873703 |
tcatctgtcttatttgctaccacttgaattcctactgtctttagatcccgtatgctcttataagtattccaattcaaattaatttcttcctcatcaatat |
15873802 |
T |
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| Q |
210 |
cttcttggtcttgagttgtatttttcctcatcgagttgtgttcacttccttcagattgtgtttccatttgaccatgttcttgaatgttggaaaccatatt |
309 |
Q |
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| T |
15873803 |
cttcttggtcttgagttttatttttcctcatcgaattgtgttcacttccttcagattgtgtttccattttaccatgttcttcaatgttggaaaccatatt |
15873902 |
T |
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| Q |
310 |
gggtggcaagtacactgaacgagcaaaatcaagtagatgaaagggcttaggattttccaatttgactattac |
381 |
Q |
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| T |
15873903 |
gggtggcaagtacactgaacgagcaaaatcaagtatatgaaagggcttaggattttccaatttgactattac |
15873974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 10 - 371
Target Start/End: Complemental strand, 15921494 - 15921132
Alignment:
| Q |
10 |
tcgaagaaaataaggtgtgacgtcattgaacnnnnnnntaggaagccttagttctccattaaaccatttagacttgaacgaaatgttactccagttccac |
109 |
Q |
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| T |
15921494 |
tcgaaaaaaataaggtgtgacgtcattaaacaaaaacataggaagccttaattctccactaaaccatttagacttgaacgaaatgttactccagttccac |
15921395 |
T |
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| Q |
110 |
tcatccgtcttatttgctaccactcgaattcctgctgtctttagatcccgtatgctcttataagtattccaattcaaattaatttcttcctcatcaatat |
209 |
Q |
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||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| | | |
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| T |
15921394 |
tcatctgtcttatttgctaccactcgaattcctactgtttttagatcccgtatgctcttataagtattccaattaaaattaatatcttcctcatcactgt |
15921295 |
T |
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| Q |
210 |
cttcttggtcttgagttgtat-ttttcctcatcgagttgtgttcacttccttcagattgtgtttccatttgaccatgttcttgaatgttggaaaccatat |
308 |
Q |
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| T |
15921294 |
cttcttggtcttgagttgtattttttccgcattgaactatgttcacctccttccaactgtgtttccatttggccatgtccttcgacgttggaaacctttt |
15921195 |
T |
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| Q |
309 |
tgggtggcaagtacactgaacgagcaaaatcaagtagatgaaagggcttaggattttccaatt |
371 |
Q |
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| T |
15921194 |
tgggtgacaagtacaatgaacgagcaaaatcgagtagatgacagggcttagtattttccaatt |
15921132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 10 - 371
Target Start/End: Complemental strand, 15900444 - 15900104
Alignment:
| Q |
10 |
tcgaagaaaataaggtgtgacgtcattgaacnnnnnnntaggaagccttagttctccattaaaccatttagacttgaacgaaatgttactccagttccac |
109 |
Q |
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||||| || |||||| || |||||||||||| |||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||| ||||| |
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| T |
15900444 |
tcgaaaaacataaggagttacgtcattgaacaaaaaaataggaagccttagttcgccactaaaccatttagacttgaaagaaatgttactccaggtccac |
15900345 |
T |
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| Q |
110 |
tcatccgtcttatttgctaccactcgaattcctgctgtctttagatcccgtatgctcttataagtattccaattcaaattaatttcttcctcatcaatat |
209 |
Q |
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| ||| |||||||||||||||||| |||||||| |||| ||||||||||||||||||||||||||||||||||| |||| ||||||| || |||| ||| |
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| T |
15900344 |
ttatctgtcttatttgctaccacttgaattcctactgtttttagatcccgtatgctcttataagtattccaattgaaatcaatttctggcttatcactat |
15900245 |
T |
|
| Q |
210 |
cttcttggtcttgagttgtatttttcctcatcgagttgtgttcacttccttcagattgtgtttccatttgaccatgttcttgaatgttggaaaccatatt |
309 |
Q |
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| T |
15900244 |
ctttttggtcttgctttgtattttt-----tgga-ttgtgttcactttcttcatattgtttttccatttgggcatgttcttcaaagttgggaac------ |
15900157 |
T |
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| Q |
310 |
gggtggcaagtacactgaacgagcaaaatcaagtagatgaaagggcttaggattttccaatt |
371 |
Q |
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| T |
15900156 |
---------gtacactgaacgaccaaaatcaagtaaatgaaagggcttatgattttccaatt |
15900104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 10 - 183
Target Start/End: Original strand, 14060016 - 14060189
Alignment:
| Q |
10 |
tcgaagaaaataaggtgtgacgtcattgaacnnnnnnntaggaagccttagttctccattaaaccatttagacttgaacgaaatgttactccagttccac |
109 |
Q |
| |
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||||| ||||||||||||||| ||||||||| ||||||| |||||||||||| | ||||| ||||||||||| |||| ||||||||| |||| |
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| T |
14060016 |
tcgaaaaaaataaggtgtgacatcattgaacaaaaaaataggaagtcttagttctccactcaaccacttagacttgaaagaaacgttactccatgtccat |
14060115 |
T |
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| Q |
110 |
tcatccgtcttatttgctaccactcgaattcctgctgtctttagatcccgtatgctcttataagtattccaatt |
183 |
Q |
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| T |
14060116 |
gcatctgtcttatttggtttcactcgaattcctattatttttagatcccttatgcttttataagtattccaatt |
14060189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 10 - 109
Target Start/End: Original strand, 15880414 - 15880511
Alignment:
| Q |
10 |
tcgaagaaaataaggtgtgacgtcattgaacnnnnnnntaggaagccttagttctccattaaaccatttagacttgaacgaaatgttactccagttccac |
109 |
Q |
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||||| ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15880414 |
tcgaaaaaaataaggtg--acgtcattgaacaaaaaaataggaagccttagttctccattaaaccatttagacttgaacgaaatgttactccagttccac |
15880511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 10 - 180
Target Start/End: Original strand, 14048645 - 14048815
Alignment:
| Q |
10 |
tcgaagaaaataaggtgtgacgtcattgaacnnnnnnntaggaagccttagttctccattaaaccatttagacttgaacgaaatgttactccagttccac |
109 |
Q |
| |
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||||| ||||||||| ||||| ||||||||| ||||||| | |||||||||| | ||||| ||||||||||| |||| ||||||||| |||| |
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| T |
14048645 |
tcgaaaaaaataaggcgtgacatcattgaacaaaaaaataggaagtcgtagttctccactcaaccacttagacttgaaggaaacgttactccatgtccat |
14048744 |
T |
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| Q |
110 |
tcatccgtcttatttgctaccactcgaattcctgctgtctttagatcccgtatgctcttataagtattcca |
180 |
Q |
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| T |
14048745 |
gcatctgtcttatttggtttcactcgaattcctaccatttttagatcccttatgcttttataagtattcca |
14048815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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