View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14574_high_4 (Length: 346)

Name: NF14574_high_4
Description: NF14574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14574_high_4
NF14574_high_4
[»] chr3 (12 HSPs)
chr3 (6-162)||(6789024-6789180)
chr3 (32-188)||(6549630-6549783)
chr3 (6-113)||(6558207-6558316)
chr3 (128-191)||(6939068-6939131)
chr3 (35-85)||(6939130-6939180)
chr3 (44-113)||(8466372-8466441)
chr3 (117-188)||(6796478-6796549)
chr3 (219-315)||(6410840-6410940)
chr3 (6-42)||(6526964-6527000)
chr3 (6-42)||(6848545-6848581)
chr3 (266-315)||(6848844-6848892)
chr3 (35-88)||(6943498-6943551)
[»] scaffold0425 (1 HSPs)
scaffold0425 (6-42)||(11671-11707)
[»] chr1 (1 HSPs)
chr1 (6-38)||(17793259-17793291)


Alignment Details
Target: chr3 (Bit Score: 157; Significance: 2e-83; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 6 - 162
Target Start/End: Original strand, 6789024 - 6789180
Alignment:
Q  6 acatgccactttgttgttaaagggaattttggtggataggagcttccatggtgtttggatcacagtctacatgcaaaattggtttgaaacttccgattca 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6789024 acatgccactttgttgttaaagggaattttggtggataggagcttccatggtgtttggatcacagtctacatgcaaaattggtttgaaacttccgattca 6789123  T
Q  106 aacatgttacatgctatacaatttcgcaggtggctcaatattttcttcatttgaatg 162  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6789124 aacatgttacatgctatacaatttcgcaggtggctcaatattttcttcatttgaatg 6789180  T

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Target: chr3; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 32 - 188
Target Start/End: Original strand, 6549630 - 6549783
Alignment:
Q  32 ttttggtggataggagcttccatggtgtttggatcacagtctacatgcaaaattggtttgaaacttccgattcaaacatgtt-acatgctatacaatttc 130  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| || |||  |||||| ||| || ||| ||||||||||||     
T  6549630 ttttggtggatgggagcttccatggtgtttggatcacagtctacatgcaaaattgg-ttggaatttctaattcaaccatattcaca-gctatacaatttt 6549727  T
Q  131 gcaggtggctcaatattttcttcatttgaatgagtagccaatgcatcaataagactgg 188  Q
    ||||  |||||  | ||||||||||| ||||| |||||||||||||||||||||||||    
T  6549728 gcag--ggctccgtcttttcttcattagaatgtgtagccaatgcatcaataagactgg 6549783  T

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Target: chr3; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 6 - 113
Target Start/End: Original strand, 6558207 - 6558316
Alignment:
Q  6 acatgccactttgttgttaaagggaattt--tggtggataggagcttccatggtgtttggatcacagtctacatgcaaaattggtttgaaacttccgatt 103  Q
    ||||||||| ||||||| ||||||||||   ||||| || ||||||||||||||||||||| |||||||||| ||  ||||||||||| |||||| |||     
T  6558207 acatgccaccttgttgtcaaagggaattacatggtgaatgggagcttccatggtgtttggaacacagtctacgtgataaattggtttggaacttcggatc 6558306  T
Q  104 caaacatgtt 113  Q
    ||||||||||    
T  6558307 caaacatgtt 6558316  T

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Target: chr3; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 128 - 191
Target Start/End: Complemental strand, 6939131 - 6939068
Alignment:
Q  128 ttcgcaggtggctcaatattttcttcatttgaatgagtagccaatgcatcaataagactggcct 191  Q
    |||||||||||||| || ||||||||||| |||||||||||| |||||||||||||||||||||    
T  6939131 ttcgcaggtggctccatcttttcttcattagaatgagtagccgatgcatcaataagactggcct 6939068  T

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Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 35 - 85
Target Start/End: Complemental strand, 6939180 - 6939130
Alignment:
Q  35 tggtggataggagcttccatggtgtttggatcacagtctacatgcaaaatt 85  Q
    |||||| | ||||||||||||||||||||||||||||||||||||||||||    
T  6939180 tggtgggtgggagcttccatggtgtttggatcacagtctacatgcaaaatt 6939130  T

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Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 44 - 113
Target Start/End: Complemental strand, 8466441 - 8466372
Alignment:
Q  44 ggagcttccatggtgtttggatcacagtctacatgcaaaattggtttgaaacttccgattcaaacatgtt 113  Q
    ||||||||||||| |||||||||||||||||| |  |||||||||||| ||||||  |||||||| ||||    
T  8466441 ggagcttccatggggtttggatcacagtctacgtaaaaaattggtttggaacttctaattcaaacttgtt 8466372  T

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Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 117 - 188
Target Start/End: Original strand, 6796478 - 6796549
Alignment:
Q  117 tgctatacaatttcgcaggtggctcaatattttcttcatttgaatgagtagccaatgcatcaataagactgg 188  Q
    ||||||||||||||||||||||||  ||||||||||| || || |  |||||||||||||||| | ||||||    
T  6796478 tgctatacaatttcgcaggtggcttgatattttcttcgttagagtttgtagccaatgcatcaacatgactgg 6796549  T

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Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 315
Target Start/End: Original strand, 6410840 - 6410940
Alignment:
Q  219 gacagctgaatgaaagaaactaggagcagcaggacagagttaac--cat--ctcaggcatcctcttcaacctcttactatttgtatgttccttcctagtt 314  Q
    |||||||||||||| |||||||||||||||||| || ||||     ||   ||||||||||| ||||||||||||||| ||  |||||||||||||||||    
T  6410840 gacagctgaatgaaggaaactaggagcagcagggcaaagtttgtttcaggactcaggcatccacttcaacctcttactgttgttatgttccttcctagtt 6410939  T
Q  315 c 315  Q
    |    
T  6410940 c 6410940  T

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Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 42
Target Start/End: Original strand, 6526964 - 6527000
Alignment:
Q  6 acatgccactttgttgttaaagggaattttggtggat 42  Q
    |||||||||||||||||| ||||||||||||||||||    
T  6526964 acatgccactttgttgtttaagggaattttggtggat 6527000  T

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Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 42
Target Start/End: Original strand, 6848545 - 6848581
Alignment:
Q  6 acatgccactttgttgttaaagggaattttggtggat 42  Q
    |||||||||||||||||| ||||||||||||||||||    
T  6848545 acatgccactttgttgtttaagggaattttggtggat 6848581  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 315
Target Start/End: Original strand, 6848844 - 6848892
Alignment:
Q  266 ctcaggcatcctcttcaacctcttactatttgtatgttccttcctagttc 315  Q
    ||||||||||| ||||||| ||||||| |||||||| |||||||||||||    
T  6848844 ctcaggcatccacttcaacatcttactctttgtatg-tccttcctagttc 6848892  T

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Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 88
Target Start/End: Complemental strand, 6943551 - 6943498
Alignment:
Q  35 tggtggataggagcttccatggtgtttggatcacagtctacatgcaaaattggt 88  Q
    |||||||  |||||||| ||| ||||||||||||||||||| | ||||||||||    
T  6943551 tggtggacgggagcttcgatgatgtttggatcacagtctacgtacaaaattggt 6943498  T

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Target: scaffold0425 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 42
Target Start/End: Original strand, 11671 - 11707
Alignment:
Q  6 acatgccactttgttgttaaagggaattttggtggat 42  Q
    |||||||||||||||||| ||||||||||||||||||    
T  11671 acatgccactttgttgtttaagggaattttggtggat 11707  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 6 - 38
Target Start/End: Complemental strand, 17793291 - 17793259
Alignment:
Q  6 acatgccactttgttgttaaagggaattttggt 38  Q
    |||| ||||||||||||||||||||||||||||    
T  17793291 acataccactttgttgttaaagggaattttggt 17793259  T

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