View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14574_high_7 (Length: 244)
Name: NF14574_high_7
Description: NF14574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14574_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 178; Significance: 4e-96; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 2022318 - 2022088
Alignment:
| Q |
1 |
cacaaactgatcaaaggcttctcttgtgacaaactgagatgatggaagttcctgctgatgtttcagctgatgtttcagttgttgttgcagaagcatattg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
2022318 |
cacaaactgatcaaaggcttctcttgtgacaaactgagatgatggaagttcctgctgatgtttcag------------ttgttgttgcagaagcatattg |
2022231 |
T |
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| Q |
101 |
aaaccaggctgatgggtatttagatttggttgcattacatttaccccaccttgtgacggtaatgaattgacgttggtctgttgggtattaatagtgtttt |
200 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| | |||||| |
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| T |
2022230 |
aaaccaggctgatgggtatttagatttggttggattacatttaccccaccttgtgacggtaatgaaatgatgttggtctgttgggtattaacactgtttt |
2022131 |
T |
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| Q |
201 |
gagatctattctccattgttagcattttcgtagatattcttcg |
243 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||| |
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| T |
2022130 |
gagatctattctccattgttagcattttcgtagatatttttcg |
2022088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 66 - 201
Target Start/End: Complemental strand, 2042602 - 2042467
Alignment:
| Q |
66 |
gctgatgtttcagttgttgttgcagaagcatattgaaaccaggctgatgggtatttagatttggttgcattacatttaccccaccttgtgacggtaatga |
165 |
Q |
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||||||||||||||||||| ||| ||||||||||| |||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
2042602 |
gctgatgtttcagttgttgctgctgaagcatattggaacctggctgatgggtatttagatttggttggattacatttaccccaccttgtgacggtaatga |
2042503 |
T |
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| Q |
166 |
attgacgttggtctgttgggtattaatagtgttttg |
201 |
Q |
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| T |
2042502 |
attgatgttggtatgttgggtattaacagtgttttg |
2042467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 194 - 243
Target Start/End: Complemental strand, 2019529 - 2019480
Alignment:
| Q |
194 |
gtgttttgagatctattctccattgttagcattttcgtagatattcttcg |
243 |
Q |
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|||||||||||| || ||||||||||||||||||||||||||||| |||| |
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| T |
2019529 |
gtgttttgagatttaatctccattgttagcattttcgtagatattgttcg |
2019480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 194 - 243
Target Start/End: Complemental strand, 2036258 - 2036209
Alignment:
| Q |
194 |
gtgttttgagatctattctccattgttagcattttcgtagatattcttcg |
243 |
Q |
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|||||||||||| ||||||||||||||||||||||| |||||||| |||| |
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| T |
2036258 |
gtgttttgagatttattctccattgttagcattttcatagatatttttcg |
2036209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 194 - 243
Target Start/End: Complemental strand, 1990563 - 1990514
Alignment:
| Q |
194 |
gtgttttgagatctattctccattgttagcattttcgtagatattcttcg |
243 |
Q |
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|||||||||||| ||||||||||||||| ||||||| ||||||| |||| |
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| T |
1990563 |
gtgttttgagatttattctccattgttaccattttcaaagatatttttcg |
1990514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 131; Significance: 4e-68; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 48204446 - 48204664
Alignment:
| Q |
1 |
cacaaactgatcaaaggcttctcttgtgacaaactgagatgatggaagttcctgctgatgtttcagctgatgtttcagttgttgttgcagaagcatattg |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| ||||||||||| |
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| T |
48204446 |
cacaaactgatcaaaggcttctcttgtgacaaactgaaatgatggaagttcctgctgatgtttcag------------ttgttgttgttgaagcatattg |
48204533 |
T |
|
| Q |
101 |
aaaccaggctgatgggtatttagatttggttgcattacatttaccccaccttgtgacggtaatgaattgacgttggtctgttgggtattaatagtgtttt |
200 |
Q |
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||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||| |
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| T |
48204534 |
aaacctggctgatgggtatttagatttggttggattac-----ccccaccttgtgacggtaatgaattgatgttggtctgttggggattaacggtgtttt |
48204628 |
T |
|
| Q |
201 |
gagatctattctccattgttagcattttcgtagata |
236 |
Q |
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||||| ||||||||||||||||||||||| |||||| |
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| T |
48204629 |
gagatttattctccattgttagcattttcatagata |
48204664 |
T |
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