View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14574_high_9 (Length: 201)
Name: NF14574_high_9
Description: NF14574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14574_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 116; Significance: 3e-59; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 20 - 174
Target Start/End: Complemental strand, 48093179 - 48093023
Alignment:
| Q |
20 |
ccttgaccacaacatgctatctgtgatgtaacaaatcctgcataaccaatacnnnnnnnnnnata--agaaggtaatattaccataaatctaatagttat |
117 |
Q |
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| T |
48093179 |
ccttgaccacaacatgctatctgtgatgtaacaaatcctgcataaccaatacttttttttttatataagaaggtaatattaccataaatctaatagttat |
48093080 |
T |
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| Q |
118 |
gctaccattattaaattactgtatatcatatgaatatgattagtatagttacgttac |
174 |
Q |
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| T |
48093079 |
gctaccattattaaattactgtatatcatatgaatatgattagtatagttacgttac |
48093023 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 20 - 169
Target Start/End: Original strand, 13324627 - 13324787
Alignment:
| Q |
20 |
ccttgaccacaacatgctatctgtgatgtaacaaatcctgc----ataaccaatacnnnnnnnnnnataagaaggtaatattaccataaatctaatagtt |
115 |
Q |
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| T |
13324627 |
ccttgaccacaacatgctatctgtgatgtaacaaatcctgcatatataaccaatac--ttttttttataagaaggtaatattaccataaatttaatagtt |
13324724 |
T |
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| Q |
116 |
atgctaccat---------tattaaattactgtatatcatatgaatatgattagtatagttac |
169 |
Q |
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| T |
13324725 |
atgctaccattatattgtatattaaattactctatatcatatgaatatgattagtatagttac |
13324787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 71; Significance: 2e-32; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 20 - 169
Target Start/End: Original strand, 5666500 - 5666660
Alignment:
| Q |
20 |
ccttgaccacaacatgctatctgtgatgtaacaaatcctgc----ataaccaatacnnnnnnnnnnataagaaggtaatattaccataaatctaatagtt |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||||| |
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| T |
5666500 |
ccttgaccacaacatgctatctgtgatgtaacaaatcctgcatatataaccaatac--ttttttttataagaaggtaatattaccataaatttaatagtt |
5666597 |
T |
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| Q |
116 |
atgctaccat---------tattaaattactgtatatcatatgaatatgattagtatagttac |
169 |
Q |
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| T |
5666598 |
atgctaccattatattgtatattaaattactctatatcatatgaatatgattagtatagttac |
5666660 |
T |
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