View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14574_low_1 (Length: 558)
Name: NF14574_low_1
Description: NF14574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14574_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 15 - 459
Target Start/End: Complemental strand, 24779467 - 24779021
Alignment:
| Q |
15 |
aatatggcgaagatgttgaagtgtgctggtaatgatgatatcattaccattaaggctgatgatgggagtgatactgttaccttcatgtttgaaagcccta |
114 |
Q |
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| T |
24779467 |
aatatggcgaagatgttgaagtgtgctggtaatgatgatatcattactattaaggctgatgatgggagtgatactgttaccttcatgtttgaaagcccta |
24779368 |
T |
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| Q |
115 |
gtaagtttcgttttctttaccaattctgtagttttagtgttaattagggttttaattgggttaattagggttttgggttcattgttgtatgattatttcg |
214 |
Q |
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| T |
24779367 |
gtaagtttcgttttctttaccaattctgtagttttagtgttaattagggttttaattgggttaattagggttttgggttcattgttgtatgattatttcg |
24779268 |
T |
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| Q |
215 |
tgctaattgggttttgggttttaattgggttaatttgaaatcttagggttttgtgttaattgattgaatactaatttcgtgctgttttgggtttagggct |
314 |
Q |
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| T |
24779267 |
tgctaattgggttttgggttttaattgggttaatttgaaatcttagggtttagtgttaattgattgaatactaatttcgtgctgttttgggtttagggct |
24779168 |
T |
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| Q |
315 |
tggtgttcaatgttaattctttgtgggattgagttaattgattgaatctttagtttctgtttgattttaatttgaagactgtataagagtctttctactg |
414 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || |||||| |||||| || || |
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| T |
24779167 |
tggtattcaatgttaattctttgtgggattgagttaattgattgaatctttagtttctgtttgattttagtttgaaacctatataagggtctttttaatg |
24779068 |
T |
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| Q |
415 |
tgtttagtgttgaaatgtctcgtct--tatgttttttcttgatattg |
459 |
Q |
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| T |
24779067 |
ggtttagtgttgaaatatcacgtctgatatttattttcttgatattg |
24779021 |
T |
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