View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14574_low_2 (Length: 429)
Name: NF14574_low_2
Description: NF14574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14574_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 4 - 413
Target Start/End: Complemental strand, 31169068 - 31168659
Alignment:
| Q |
4 |
cagagaagaatttgaaaccaagtgaacaatgttaggggtgcatttgacaataaatccaaaaataataacaaatttgatttacactttgcaaggatcatct |
103 |
Q |
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| T |
31169068 |
cagagaagaatttgaaaccgagtgaacaatgttaggagtgcatttgacaataaatccaaaaataataacaaatttgattaacactttgcaaggatcatct |
31168969 |
T |
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| Q |
104 |
tagaatattagtaatttgagagaagagtcttaatcatctcaccaattcagccattcggatcatgtcatgatgccctcttgaactaagggccctatagata |
203 |
Q |
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| T |
31168968 |
tagaatattagtaatttgagagaagagtcttaatcatctcaccaattcagccattcggatcatgtcatgatgccctcttgaactaagggccctatagata |
31168869 |
T |
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| Q |
204 |
acatctgattctttgaatgcatctgcctcaataacaacagcattgctagctgctcctacccaaaaaggcctgtttgaattccattcataaaggaaacaac |
303 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
31168868 |
acatctgattctttgaatgcatctgcctcaataacaacagcattgctagctgctcctacccaaaaaggcctgtttaaattccattcataaaggaaacaac |
31168769 |
T |
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| Q |
304 |
gttaagttctgactatttttcaatgattcatttgtgttcatgcaaatatacatcataatttcttactctttgagaatatctttaagcaccgtgctcttgc |
403 |
Q |
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| T |
31168768 |
attaagttcttactatttttcaatgattcatttgtgttcatgcaaatatacataataatttcttactctttgagaatatctttaagcaccgtgctcttgc |
31168669 |
T |
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| Q |
404 |
cagctcccat |
413 |
Q |
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| T |
31168668 |
cagctcccat |
31168659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 164 - 313
Target Start/End: Original strand, 38627728 - 38627876
Alignment:
| Q |
164 |
catgtcatgatgccctcttgaactaagggccctatagataacatctgattctttgaatgcatctgcctcaataacaacagcattgctagctgctcctacc |
263 |
Q |
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| T |
38627728 |
catgtcatgatggcctgttgagctaagtgccctatagatgacatctgattctttgaaggcatctgcttcaatgactactgcatttcctgatgctcctgcc |
38627827 |
T |
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| Q |
264 |
caaaaaggcctgtttgaattccattcataaaggaaacaacgttaagttct |
313 |
Q |
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| T |
38627828 |
cagaaaggtctgtttaaatttcattcataaa-gaaacaacattaggttct |
38627876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 359 - 413
Target Start/End: Original strand, 38628500 - 38628554
Alignment:
| Q |
359 |
taatttcttactctttgagaatatctttaagcaccgtgctcttgccagctcccat |
413 |
Q |
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| T |
38628500 |
taattgcttactctttgagaatatccttgagtacagtgctcttgccagctcccat |
38628554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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