View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14574_low_4 (Length: 396)
Name: NF14574_low_4
Description: NF14574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14574_low_4 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 365; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 16 - 396
Target Start/End: Complemental strand, 38944570 - 38944190
Alignment:
| Q |
16 |
catatatatctaaatattacaagacagtaatgaccacctcatgtgcatgaaaatcaagaaaatagcatatatgcaagataacaatgaattatatattcat |
115 |
Q |
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| T |
38944570 |
catatatatctaaatattacaagacagtaatgaccacctcatgtgcatgaaaatcaagaaaatagcatatatgcaagataacaatgaattatatattcat |
38944471 |
T |
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| Q |
116 |
atatggtccccatcaccgccgatttcagctagctctgaacactcctctcttatagttttgtttggttatggatataatgttgaattgaagccacctgcag |
215 |
Q |
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| T |
38944470 |
atatggtccccatcaccaccgatttcagctagctctgaacactcctctcttatagttttgtttggttatggatataatgttgaattgaagccacctgcag |
38944371 |
T |
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| Q |
216 |
taatgagacattgtgattttgtgaggtgtaatgcacatggctttcatagccatgcacgatgaagaatgtctaatgctcagtagcacatatatattctctg |
315 |
Q |
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| T |
38944370 |
taatgagacattgtgactttgtgaggtgtaatgcacatggctttcatagccatgcacgatgaagaatgtctaatgctcagtaacacatatatattctctg |
38944271 |
T |
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| Q |
316 |
atatgacgtgtcactccttcacattgctctctttcactataaattcccatgcaattaaggagctccgcatcacaacacaac |
396 |
Q |
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| T |
38944270 |
atatgacgtgtcactccttcacattgctctctttcactataaattcccatgcaattaaggatctccgcatcacaacacaac |
38944190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 249 - 295
Target Start/End: Complemental strand, 38951823 - 38951777
Alignment:
| Q |
249 |
cacatggctttcatagccatgcacgatgaagaatgtctaatgctcag |
295 |
Q |
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| T |
38951823 |
cacaaggcttccatagccatgcaagctgaagaatgtctaatgctcag |
38951777 |
T |
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