View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14574_low_7 (Length: 288)
Name: NF14574_low_7
Description: NF14574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14574_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 149; Significance: 1e-78; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 17 - 273
Target Start/End: Complemental strand, 2022701 - 2022448
Alignment:
| Q |
17 |
atactctaagattgaatcatgtatatgtatgagcatgtgtgctcaaattacttttagttgggtattttgcacaagttcaatgaaatctcaaaaggaaata |
116 |
Q |
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| T |
2022701 |
atactataagattgaatcatgcatatgtatgagcatgtgtgctcaaattacttttagttgggtattttgcacaagttcaatgaaatctcaaaaggaaata |
2022602 |
T |
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| Q |
117 |
aatct--nnnnnnnnnnnctaaaacaagattattattcaatatattttcctctttctgtcatcagacaaaaagaaagccagaaggnnnnnnnnncttatg |
214 |
Q |
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||||| |||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| |||||| |||||| |
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| T |
2022601 |
aatctaaaaaaaaaaaaactaaaacaag---attattcaatatattttcctctttctgtcatcagac-aaaagaaagcgagaagg-aaaaaaaacttatg |
2022507 |
T |
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| Q |
215 |
attcaagaaacttaaaggggtgcggccaagtaggaagtaaaagctaaaaagatgaacat |
273 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2022506 |
attcaagaaacttaaaggggtgcggccaagtaggaagtaaaagctaaaaagatgaacat |
2022448 |
T |
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