View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14574_low_9 (Length: 213)
Name: NF14574_low_9
Description: NF14574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14574_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 183; Significance: 4e-99; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 39562010 - 39562200
Alignment:
| Q |
1 |
taaaccatgcacgtgagattgtgttgaagattatatcttattaaagaaaacctttagaatctcgaaaggctggattttccaatttggctcttgttagtct |
100 |
Q |
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| T |
39562010 |
taaaccatgcacgtgagattgtgttgaagattatatcttattaaagaaaacctttagaatctcgaaaggctggattttccaatttggctcttgttagtct |
39562109 |
T |
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| Q |
101 |
gatatggtattggtttatgaatccacggtatcttaatgcaatccgtaactgggaccccaaaagtaacattagaataagcaaggtttttgta |
191 |
Q |
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| T |
39562110 |
gatatggtattggtttatgaatccacagtatcttaatgcaatccataactgggaccccaaaagtaacattagaataagcaaggtttttgta |
39562200 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 159; E-Value: 7e-85
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 39566689 - 39566879
Alignment:
| Q |
1 |
taaaccatgcacgtgagattgtgttgaagattatatcttattaaagaaaacctttagaatctcgaaaggctggattttccaatttggctcttgttagtct |
100 |
Q |
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| T |
39566689 |
taaactatgcacatgagattgtgtagaagattatatcttattaaagaaaacctttagaatctcgaaaggctagattttccaatttggctcttgttattct |
39566788 |
T |
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| Q |
101 |
gatatggtattggtttatgaatccacggtatcttaatgcaatccgtaactgggaccccaaaagtaacattagaataagcaaggtttttgta |
191 |
Q |
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| T |
39566789 |
gatatggtattgggttatgaatccacagtatcttaatgcaatccataactgggaccccaaaagtaacattagaataagcaaggtttttgta |
39566879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 6 - 191
Target Start/End: Original strand, 39572198 - 39572390
Alignment:
| Q |
6 |
catgcacgtgagattgtgttgaagattatatcttattaaagaaaacctttaga-------atctcgaaaggctggattttccaatttggctcttgttagt |
98 |
Q |
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| T |
39572198 |
catgcacatgagattgtgttgaatattatatcttattgtagaaaacctttagagtttagaatcttgaaaggctagattttccaattttcctattgttagt |
39572297 |
T |
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| Q |
99 |
ctgatatggtattggtttatgaatccacggtatcttaatgcaatccgtaactgggaccccaaaagtaacattagaataagcaaggtttttgta |
191 |
Q |
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| T |
39572298 |
ctgatttggtattgggttatgaatccacagtatcttaatgcaatccataactgggacaccaaaagtaatattagaataaccaaggtttttgta |
39572390 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 8 - 93
Target Start/End: Complemental strand, 39581073 - 39580986
Alignment:
| Q |
8 |
tgcacgtgagattgtgttgaagattatat--cttattaaagaaaacctttagaatctcgaaaggctggattttccaatttggctcttg |
93 |
Q |
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| T |
39581073 |
tgcacatgagattgtgttgaagatcatataccttattaaagaaaaagtttagaatctcgaaaggctagattttacaattttgctcttg |
39580986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 16 - 93
Target Start/End: Complemental strand, 39584694 - 39584617
Alignment:
| Q |
16 |
agattgtgttgaagattatatcttattaaagaaaacctttagaatctcgaaaggctggattttccaatttggctcttg |
93 |
Q |
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| T |
39584694 |
agattgtgttcaagattatattttactaaagaaaaccttgtaaatctcgaaaggctagattttctaatttggctcttg |
39584617 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 50
Target Start/End: Original strand, 39560705 - 39560749
Alignment:
| Q |
6 |
catgcacgtgagattgtgttgaagattatatcttattaaagaaaa |
50 |
Q |
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| T |
39560705 |
catgcacatcagattatgttgaagattatatattattaaagaaaa |
39560749 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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