View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14575_high_2 (Length: 555)
Name: NF14575_high_2
Description: NF14575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14575_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 12 - 536
Target Start/End: Original strand, 25110745 - 25111295
Alignment:
| Q |
12 |
attatacttaatgattagttagttagaggttggagaatttttt-gcagtaggtaataatcaaaatctggacctcatcaataatatatcttcggcgtttca |
110 |
Q |
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| T |
25110745 |
attatacttggtgattagttagttacaggttggagaatttttttgcaatatgtaagaatcaaaatctggacctcattaataatatatcttcgacgtttca |
25110844 |
T |
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| Q |
111 |
aaccata-------------ccttggaagata----------tatgtaagtgtacttttaaccctaaaacactaaaa-aatatacaagaagatgcagaat |
186 |
Q |
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| T |
25110845 |
aaccataccattggattataccttggaggataagtttcactatatttaagtgtacatttaaccctaaaacactaaaaaaatatacaagaagatgcagaat |
25110944 |
T |
|
| Q |
187 |
atgcaaaaatgtacttgaagaacatgaaagtatatatataatagcaaccttaaaatgatatagagtagaaagaaaatgacctttctagcatacaaattag |
286 |
Q |
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| T |
25110945 |
atgcaaaaatgtacttgaagaacatgaaagtatatatataatagcaaccataaaatgatatagagtagaaagaaaatgacctttctagcatacaaattag |
25111044 |
T |
|
| Q |
287 |
ctagaatagcaccccaaccaccattatcaaaactcatctgaattatggaggagccaaatagcacgatttgaggtctcattggtcctgccataactttata |
386 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25111045 |
ctagaatagcaccccaaccaccattatcaaaactcatctgaattatggaggagccaaatagcacgatttgaggtctcattggtcctgccataactttata |
25111144 |
T |
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| Q |
387 |
ctatgttgttattttatttggctccctctcactcaaacactcctcctgagatgttgcactatgtatcatattggaatcacaatttatagatgtggatttt |
486 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25111145 |
ctatgttgttattttatttggctccctctcactcaaacactactcctgagatgttgcactatgtatcatattggaatcacaatttatagatgtggatttt |
25111244 |
T |
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| Q |
487 |
atta-ttttttgattaattttctccccctagggccagtttgcagtccttgc |
536 |
Q |
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|||| ||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
25111245 |
attatttttttgattatttttctccccctagggccagtttgcagtccttgc |
25111295 |
T |
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