View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14575_high_4 (Length: 510)
Name: NF14575_high_4
Description: NF14575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14575_high_4 |
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| [»] scaffold0536 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 483; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 1 - 491
Target Start/End: Original strand, 48911446 - 48911936
Alignment:
| Q |
1 |
cctctatgcgacatagcaactctctttgccttacgccgtcaaaatgtcaccatcataaccacaccctccaatgctcaaatccttggcaaatctattcctt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48911446 |
cctctatgcgacatagcaactctctttgccttacgccgtcaaaatgtcaccatcataaccacaccctccaatgctcaaatccttggcaaatctattcctt |
48911545 |
T |
|
| Q |
101 |
taaaccaacaccttcgtattcacactgttccatttccttcacaagcagtaggcctccccgatggtgtcgaacccctcttcaccaccaccgacctcgacaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
48911546 |
taaaccaacaccttcgtattcacactgttccatttccttcacaagcagtaggcctccccgatggcgtcgaacccctcttcaccaccaccgacctcgacaa |
48911645 |
T |
|
| Q |
201 |
cctcaccaaaatctatcgagcagccactctactccgaccaaccatccaacacttcgtggagcagcacccaccagattgcatcgtcgctgatttcatgtat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
48911646 |
cctcaccaaaatctatcgagcagccactctactccgaccaaccatccaacacttcgtggagcagcacccaccagattgcatcgtggctgatttcatgtat |
48911745 |
T |
|
| Q |
301 |
ccttgggttcatgaacttgcaaacaagctacaaattcctagacttgctttcaacggtttctctctgtttgctatttgtgccatggaatctgttaaagcac |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48911746 |
ccttgggttcatgaacttgcaaacaagctacaaattcctagacttgctttcaacggtttctctctgtttgctatttgtgccatggaatctgttaaagcac |
48911845 |
T |
|
| Q |
401 |
actctctttatgaatctgcttcttttgtaattcctcatcttcctcattctattgccatgaatgcagcaccaccgaagcagctgagtaaatt |
491 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48911846 |
actctctttatgaatctgcttcttttgtaattcctcatcttcctcattctattgccatgaatgcagcaccaccgaagcagctgagtaaatt |
48911936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 253 - 389
Target Start/End: Complemental strand, 48952063 - 48951927
Alignment:
| Q |
253 |
ttcgtggagcagcacccaccagattgcatcgtcgctgatttcatgtatccttgggttcatgaacttgcaaacaagctacaaattcctagacttgctttca |
352 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| || ||||| | | || |||| | |||| || ||||| ||||| || ||||| ||| | | |||| |
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| T |
48952063 |
ttcgtggagcagcacccacctgattgcatcgtggcggattttttattcccgtgggctgatgagctagcaaagaagctgcacattccgagattcgtgttca |
48951964 |
T |
|
| Q |
353 |
acggtttctctctgtttgctatttgtgccatggaatc |
389 |
Q |
| |
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|||||||||| || ||| | || |||||||||||||| |
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| T |
48951963 |
acggtttctcactctttaccatatgtgccatggaatc |
48951927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 48975175 - 48975036
Alignment:
| Q |
1 |
cctctatgcgacatagcaactctctttgccttacgccgtcaaaatgtcaccatcataaccacaccctccaatgctcaaatccttggcaaatctattcctt |
100 |
Q |
| |
|
|||||||||||||| || || |||||||||| | || |||| |||| |||||||| ||||| ||||| ||||| |||||| || |||||| || |||| |
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| T |
48975175 |
cctctatgcgacattgctacactctttgcctcatgcggtcaccatgttaccatcattaccactccctctaatgcccaaatcattctcaaatccatccctt |
48975076 |
T |
|
| Q |
101 |
taaaccaacaccttcgtattcacactgttccatttccttc |
140 |
Q |
| |
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|| | ||||| || |||| ||||||||||||||||| |
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| T |
48975075 |
ctcacaaccacctccgccttcatactgttccatttccttc |
48975036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536 (Bit Score: 278; Significance: 1e-155; HSPs: 3)
Name: scaffold0536
Description:
Target: scaffold0536; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 5 - 486
Target Start/End: Original strand, 5616 - 6097
Alignment:
| Q |
5 |
tatgcgacatagcaactctctttgccttacgccgtcaaaatgtcaccatcataaccacaccctccaatgctcaaatccttggcaaatctattcctttaaa |
104 |
Q |
| |
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|||| ||||||||||| ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| || |||||||| |
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| T |
5616 |
tatgtgacatagcaacactctttgccttacgccgtcaaaaagttaccatcataaccacaccctccaatgctcaaatccttggcaaatccatccctttaaa |
5715 |
T |
|
| Q |
105 |
ccaacaccttcgtattcacactgttccatttccttcacaagcagtaggcctccccgatggtgtcgaacccctcttcaccaccaccgacctcgacaacctc |
204 |
Q |
| |
|
||||||||| ||||||||||| |||||||||||||| || | ||| |||||||| ||||| |||||| ||||| | || ||||||||||||| || || |
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|
| T |
5716 |
ccaacacctccgtattcacaccgttccatttccttcccatgaagttggcctccctgatggcgtcgaaagcctctccgccgccaccgacctcgagaatctt |
5815 |
T |
|
| Q |
205 |
accaaaatctatcgagcagccactctactccgaccaaccatccaacacttcgtggagcagcacccaccagattgcatcgtcgctgatttcatgtatcctt |
304 |
Q |
| |
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||| |||| || ||| ||||||| |||| |||| ||||||||||||||||||||||||||||||| |||||||| || || |||||| ||| ||||| |
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| T |
5816 |
cgcaagatctttcaagccaccactctcctccaaccacccatccaacacttcgtggagcagcacccaccggattgcattgtggcggatttcttgtttcctt |
5915 |
T |
|
| Q |
305 |
gggttcatgaacttgcaaacaagctacaaattcctagacttgctttcaacggtttctctctgtttgctatttgtgccatggaatctgttaaagcacactc |
404 |
Q |
| |
|
||||| ||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |
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| T |
5916 |
gggttgatgaacttgcaaacaagcttcaaattcctagactcagtttcaacggtttctctctgtttgcaatttgtgccatagaatctgttaaagcacactc |
6015 |
T |
|
| Q |
405 |
tctttatgaatctgcttcttttgtaattcctcatcttcctcattctattgccatgaatgcagcaccaccgaagcagctgagt |
486 |
Q |
| |
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|||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| || ||||||||| ||||| |
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| T |
6016 |
tctttatgaatctgcttcatttgtaattcctggtcttcctcattctattgccatgaatgcagctccgccgaagcagatgagt |
6097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 32 - 486
Target Start/End: Original strand, 9627 - 10081
Alignment:
| Q |
32 |
tacgccgtcaaaatgtcaccatcataaccacaccctccaatgctcaaatccttggcaaatctattcctttaaaccaacaccttcgtattcacactgttcc |
131 |
Q |
| |
|
||||| |||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||| |
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| T |
9627 |
tacgctgtcaaaatgttaccatcataaccacaccttccaacgctcaaatccttggcaaatctatccctttaaaccaacatctccgtattcacactgttcc |
9726 |
T |
|
| Q |
132 |
atttccttcacaagcagtaggcctccccgatggtgtcgaacccctcttcaccaccaccgacctcgacaacctcaccaaaatctatcgagcagccactcta |
231 |
Q |
| |
|
||||||||| |||| ||||||||||||||| ||||| ||| |||| || |||| ||| || | ||| | |||||||| || ||| ||||||| |
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|
| T |
9727 |
atttccttcccaagaagtaggcctccccgacggtgtagaaagtctctctgccgccactgacttcaataacatggtcaaaatctttcaagctaccactctc |
9826 |
T |
|
| Q |
232 |
ctccgaccaaccatccaacacttcgtggagcagcacccaccagattgcatcgtcgctgatttcatgtatccttgggttcatgaacttgcaaacaagctac |
331 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||| ||||||||||| | ||||| ||| |||||||||| ||||||||||||||||||| | |
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| T |
9827 |
ctccgaccacccatccaacacttcgtggagcagcacccaccggattgcatcgtgacagattttttgtttccttgggttgatgaacttgcaaacaagcttc |
9926 |
T |
|
| Q |
332 |
aaattcctagacttgctttcaacggtttctctctgtttgctatttgtgccatggaatctgttaaagcacactctctttatgaatctgcttcttttgtaat |
431 |
Q |
| |
|
||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||||||||| |
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|
| T |
9927 |
aaattccaagactctctttcaacggtttctctctgtttgctatttgtgccatggaatctgttaaagcacactcactttatggatatgcttcttttgtaat |
10026 |
T |
|
| Q |
432 |
tcctcatcttcctcattctattgccatgaatgcagcaccaccgaagcagctgagt |
486 |
Q |
| |
|
|||| ||||||||||||||||| |||||||||| |||| || |||||| ||||| |
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|
| T |
10027 |
tcctggtcttcctcattctattgtcatgaatgcaacaccgcctaagcagatgagt |
10081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 253 - 389
Target Start/End: Original strand, 812 - 948
Alignment:
| Q |
253 |
ttcgtggagcagcacccaccagattgcatcgtcgctgatttcatgtatccttgggttcatgaacttgcaaacaagctacaaattcctagacttgctttca |
352 |
Q |
| |
|
|||||||| ||| | ||||| ||||||||||| || ||||| | | |||||||| |||| || ||||||||||| || ||||| ||| |||| |||| |
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|
| T |
812 |
ttcgtggaacaggaaccacctgattgcatcgtagcggattttttattcccttgggtggatgagctggcaaacaagcttcacattccgagatttgccttca |
911 |
T |
|
| Q |
353 |
acggtttctctctgtttgctatttgtgccatggaatc |
389 |
Q |
| |
|
|||||||||| || ||| | || |||||||||||||| |
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|
| T |
912 |
acggtttctcactatttaccatatgtgccatggaatc |
948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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