View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14575_high_5 (Length: 440)

Name: NF14575_high_5
Description: NF14575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14575_high_5
NF14575_high_5
[»] chr8 (3 HSPs)
chr8 (4-398)||(9408144-9408535)
chr8 (211-248)||(29410787-29410824)
chr8 (211-247)||(13358005-13358041)
[»] chr1 (1 HSPs)
chr1 (210-250)||(30927776-30927816)
[»] chr3 (3 HSPs)
chr3 (194-228)||(31138128-31138162)
chr3 (170-244)||(41223047-41223121)
chr3 (215-264)||(37319943-37319992)
[»] chr2 (2 HSPs)
chr2 (173-247)||(34346298-34346372)
chr2 (210-258)||(20612583-20612631)
[»] scaffold0024 (1 HSPs)
scaffold0024 (215-247)||(149409-149441)
[»] chr7 (1 HSPs)
chr7 (210-246)||(39230524-39230560)


Alignment Details
Target: chr8 (Bit Score: 218; Significance: 1e-119; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 4 - 398
Target Start/End: Original strand, 9408144 - 9408535
Alignment:
Q  4 catttcactttgatgcttaaccacgtttttagttcatnnnnnnnnnttatttcattcgtcttaaaatatacatcactttaacaaattttacatgaatcaa 103  Q
    |||||||||||||||||||||||||||||||||||||         ||||||| ||| |||||||||||||||||||||||||||||||||||||||| |    
T  9408144 catttcactttgatgcttaaccacgtttttagttcataaaaaaaa-ttatttccttcatcttaaaatatacatcactttaacaaattttacatgaatcga 9408242  T
Q  104 gaaaggtgataaagtttatatgaaaaaggtaaattaagaattactttannnnnnnnnnnnnnggatcgatttccgacccattaaatgtaaacgattaata 203  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||              ||||||||||||||||||||||||||||||||||||||    
T  9408243 gaaagatgataaagtttatatgaaaaaggtaaattaagaattactttattttttttgtttttggatcgatttccgacccattaaatgtaaacgattaata 9408342  T
Q  204 tgacttatgcatagaggcatgcacattggtcaagcgttgttccctcttgagaatcaaattctgcattcgctacatctttgaaaggagttccttttactac 303  Q
    ||||| |||||||||||||||| |||||| ||| | |||||||||| ||||||||||| || | ||||||||| | ||||  ||||  |||||   ||||    
T  9408343 tgactcatgcatagaggcatgcgcattggccaaacattgttccctcctgagaatcaaactcggtattcgctacgtttttggtaggaactccttg--ctac 9408440  T
Q  304 tggagctcatacaacttggttaattaagaattactttacaaaatagaaaacgtgttttttccattgtacttataatcccctcgtgaaatttaatg 398  Q
     ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9408441 cggagctcaagcaacttggttaattaagaattactttacaaaatagaaaacgtgttttttccattgtacttataatcccctcgtgaaatttaatg 9408535  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 211 - 248
Target Start/End: Original strand, 29410787 - 29410824
Alignment:
Q  211 tgcatagaggcatgcacattggtcaagcgttgttccct 248  Q
    ||||||||||||||||||||||||||||||||||||||    
T  29410787 tgcatagaggcatgcacattggtcaagcgttgttccct 29410824  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 211 - 247
Target Start/End: Original strand, 13358005 - 13358041
Alignment:
Q  211 tgcatagaggcatgcacattggtcaagcgttgttccc 247  Q
    |||||||||||||||||||||| ||| ||||||||||    
T  13358005 tgcatagaggcatgcacattggccaaacgttgttccc 13358041  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 210 - 250
Target Start/End: Original strand, 30927776 - 30927816
Alignment:
Q  210 atgcatagaggcatgcacattggtcaagcgttgttccctct 250  Q
    |||| |||||||||||||||||| |||||||||||||||||    
T  30927776 atgcgtagaggcatgcacattggccaagcgttgttccctct 30927816  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 194 - 228
Target Start/End: Original strand, 31138128 - 31138162
Alignment:
Q  194 acgattaatatgacttatgcatagaggcatgcaca 228  Q
    ||||||||| |||||||||||||||||||||||||    
T  31138128 acgattaatctgacttatgcatagaggcatgcaca 31138162  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 170 - 244
Target Start/End: Original strand, 41223047 - 41223121
Alignment:
Q  170 cgatttccgacccattaaatgtaaacgattaatatgacttatgcatagaggcatgcacattggtcaagcgttgtt 244  Q
    |||||||||| ||||||||  ||  ||||||||  ||||||||| ||||||||||| |||||| ||| |||||||    
T  41223047 cgatttccgatccattaaagataggcgattaatcagacttatgcgtagaggcatgcgcattggccaaacgttgtt 41223121  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 264
Target Start/End: Original strand, 37319943 - 37319992
Alignment:
Q  215 tagaggcatgcacattggtcaagcgttgttccctcttgagaatcaaattc 264  Q
    |||||||||||||| | ||||||||||||| | || ||||||||||||||    
T  37319943 tagaggcatgcacacttgtcaagcgttgtttcatcctgagaatcaaattc 37319992  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 173 - 247
Target Start/End: Original strand, 34346298 - 34346372
Alignment:
Q  173 tttccgacccattaaatgtaaacgattaatatgacttatgcatagaggcatgcacattggtcaagcgttgttccc 247  Q
    |||||||||||  ||| || | |||||||| ||||| |||| |||||||||||||| ||| |||| |||||||||    
T  34346298 tttccgacccaccaaaggtgagcgattaatctgactcatgcgtagaggcatgcacactggccaagtgttgttccc 34346372  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 210 - 258
Target Start/End: Original strand, 20612583 - 20612631
Alignment:
Q  210 atgcatagaggcatgcacattggtcaagcgttgttccctcttgagaatc 258  Q
    |||||||||||||||| || ||| |||| ||||||||||| ||||||||    
T  20612583 atgcatagaggcatgcgcactggccaagtgttgttccctcctgagaatc 20612631  T

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Target: scaffold0024 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 215 - 247
Target Start/End: Complemental strand, 149441 - 149409
Alignment:
Q  215 tagaggcatgcacattggtcaagcgttgttccc 247  Q
    |||||||||||||| ||||||||||||||||||    
T  149441 tagaggcatgcacactggtcaagcgttgttccc 149409  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 210 - 246
Target Start/End: Complemental strand, 39230560 - 39230524
Alignment:
Q  210 atgcatagaggcatgcacattggtcaagcgttgttcc 246  Q
    ||||||||||||||||||||| |||||| ||||||||    
T  39230560 atgcatagaggcatgcacattagtcaagtgttgttcc 39230524  T

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