View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14575_low_1 (Length: 728)

Name: NF14575_low_1
Description: NF14575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14575_low_1
NF14575_low_1
[»] chr8 (8 HSPs)
chr8 (20-527)||(19719031-19719533)
chr8 (44-563)||(19702184-19702702)
chr8 (50-513)||(19713903-19714365)
chr8 (58-456)||(13028650-13029049)
chr8 (92-456)||(34971634-34971998)
chr8 (595-693)||(19718825-19718929)
chr8 (595-631)||(19702072-19702108)
chr8 (155-192)||(19643045-19643082)
[»] chr1 (4 HSPs)
chr1 (102-310)||(42154065-42154280)
chr1 (343-456)||(42153945-42154058)
chr1 (207-416)||(28752318-28752530)
chr1 (207-294)||(28749497-28749584)
[»] chr6 (3 HSPs)
chr6 (91-174)||(27120607-27120689)
chr6 (76-144)||(27118089-27118157)
chr6 (91-177)||(27120138-27120226)


Alignment Details
Target: chr8 (Bit Score: 420; Significance: 0; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 20 - 527
Target Start/End: Complemental strand, 19719533 - 19719031
Alignment:
Q  20 tgaagtagtgctgctacttgcttctatgtcaacattaacgatggagctttcaccatcttctgaaaatagttcaaatttaggtttaatgcataatgctttg 119  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19719533 tgaagtagtgatgctacttgcttctatgtcaacattaacgatggagctttcaccatcttctgaaaatagttcaaatttaggtttaatgcataatgctttg 19719434  T
Q  120 gagtgttctcctactgctttgactcttaaatatacaaacaaagattctattccttcaacaactattctcaacaagcttttatgctgttttgggcccttaa 219  Q
    |||||||||||||||||  | ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19719433 gagtgttctcctactgcgctaactcttaaatatacaaacaaagattctgttccttcaacaactattctcaacaagcttttatgctgttttgggcccttaa 19719334  T
Q  220 ttgaatcaaagaccgaacttttagcgaagactaacggcgtcagagttgttttccagaaacgttgtgatgcagaaaatgctgttactcatgttggaaagta 319  Q
    ||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19719333 ttgaatcaaagaccgaactcttagtgaagactaacggcgtcagagttgttttccagaaacgttgtgatgcagaaaatgctgttactcatgttggaaagta 19719234  T
Q  320 tcgttttggatcttcactaaaatgctttcgtctcaaggttttgcctcagaaaccaaagaaaggtactggaaagcgaggcaggaaaagcaagaaagaatca 419  Q
    ||||||||||||||||||| || |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  19719233 tcgttttggatcttcactacaaagctttcgtctcaagattttgcctcagaaaccaaagaaaggtactggaaagcgaggcatgaaaagcaagaaagaatca 19719134  T
Q  420 agttttgtgcatgatgtttctgcagtttgatgcattgatttcaatcttttctgcatctttggtattacattatgtttgtcgaaattacaatgttcttctt 519  Q
    ||||||||||||||||||| ||||||||||||||||| ||| ||||||||| |||||||| ||     ||||||||||||||||||||| ||||||||||    
T  19719133 agttttgtgcatgatgtttatgcagtttgatgcattggtttgaatcttttcggcatctttagt-----attatgtttgtcgaaattacagtgttcttctt 19719039  T
Q  520 tagttagt 527  Q
    ||||||||    
T  19719038 tagttagt 19719031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 44 - 563
Target Start/End: Complemental strand, 19702702 - 19702184
Alignment:
Q  44 tatgtcaacattaacgatggagctttcaccatcttctgaaaatagttcaaatttaggtttaatgcataatgctttggagtgttctcctactgctttgact 143  Q
    ||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | |||    
T  19702702 tatgtcaacattagctatggagctttcaccatcttctgaaaatagttcaaatttaggtttaatgcataatgctttggagtgttctcctactgcgctaact 19702603  T
Q  144 cttaaatatacaaacaaagattctattccttcaacaactattctcaacaagcttttatgctgttttgggcccttaattgaatcaaagaccgaacttttag 243  Q
    |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  19702602 cttaaacatacaaacaaagattctgttccttcaacaactattctcaacaagcttttatgctgttttgggcccttaattgaatcaaagaccgaactcttag 19702503  T
Q  244 cgaagactaacggcgtcagagttgttttccagaaacgttgtgatgcagaaaatgctgttactcatgttggaaagtatcgttttggatcttcactaaaatg 343  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19702502 cgaagactaacggcgtcagagttgttttccagaaacgttgtgatgcagaaaatgctgttactcatgttggaaagtatcgttttggatcttcactaaaatg 19702403  T
Q  344 ctttcgtctcaaggttttgcctcagaaaccaaagaaaggtactggaaagcgaggcaggaaaagcaagaaagaatcaagttttgtgcatgatgtttctgca 443  Q
    |||||||||||||| ||||||||| ||||||||||||||||| |        ||| |||||||||||||| |||||||||  ||| ||| ||||||||||    
T  19702402 ctttcgtctcaaggatttgcctcataaaccaaagaaaggtaccg--------ggctggaaaagcaagaaacaatcaagttccgtgaatgttgtttctgca 19702311  T
Q  444 gtttgatgcattgat-----ttcaatcttttctgcatctttggtattacattatgtttgtcgaaattacaatgttct--tctttagttagtttatttgaa 536  Q
    ||||||||||||| |     ||||||||||| |||||||||||||||| | ||||||||||||||||| | ||||||  ||||||| |||||||||||||    
T  19702310 gtttgatgcattggttttgcttcaatcttttgtgcatctttggtattatactatgtttgtcgaaattagagtgttcttatctttagctagtttatttgaa 19702211  T
Q  537 tatcaaaattcttaattagtttagtta 563  Q
    ||||||||||||||||||| |||||||    
T  19702210 tatcaaaattcttaattagcttagtta 19702184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 50 - 513
Target Start/End: Complemental strand, 19714365 - 19713903
Alignment:
Q  50 aacattaacgatggagctttcaccatcttctgaaaatagttcaaatttaggtttaatgcataatgctttggagtgttctcctactgctttgactcttaaa 149  Q
    |||||||  ||||||| |||||||||||||||||| ||||| |||||| |||||| ||||||||| |||||||||||||||||||||| | |||||||||    
T  19714365 aacattagagatggagttttcaccatcttctgaaattagtttaaatttgggtttagtgcataatgttttggagtgttctcctactgctctaactcttaaa 19714266  T
Q  150 tatacaaacaaagattctattccttcaacaactattctcaacaagcttttatgctgttttgggcccttaattgaatcaaagaccgaacttttagcgaaga 249  Q
    |||||||||||||||| | ||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||| |  |||||||||    
T  19714265 tatacaaacaaagattttgttccttcaacagctattctcaacaagcttttatgctgctttggtcccttaattgaatcaaagactgaattgctagcgaaga 19714166  T
Q  250 ctaacggcgtcagagttgttttccagaaacgttgtgatgcagaaaatgctgttactcatgttggaaagtatcgttttggatcttcactaaaatgctttcg 349  Q
    ||||  ||||||||||||||||| ||||||||||||||||||||| |||| |||||||| | ||||||||||||||||||||| ||||| || ||||||     
T  19714165 ctaatagcgtcagagttgttttcgagaaacgttgtgatgcagaaactgcttttactcatatcggaaagtatcgttttggatctgcactacaaagctttca 19714066  T
Q  350 tctcaaggttttgcctcagaaaccaaagaaaggtactggaaagcgaggcaggaaaagcaagaaagaatcaagttttgtgcatgatgtttctgcagtttga 449  Q
    |||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||| |||||| || |||||||| ||||||||| ||||||    
T  19714065 tctcaaggttttgcctcataaaccaaagaaaggaaccggaaagcgaggcaggaaaagcaagaaacaatcaacttctgtgcatggtgtttctgcggtttga 19713966  T
Q  450 tgcattgatttcaatcttttctgcatctttggtattacattatgtttgtcgaaattacaatgtt 513  Q
    |||| ||  || ||| |||| | ||| |||||||| | | ||  ||||||||||||||||||||    
T  19713965 tgcactggctttaatgttttgtacatatttggtatcaaagta-atttgtcgaaattacaatgtt 19713903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 220; E-Value: 1e-120
Query Start/End: Original strand, 58 - 456
Target Start/End: Complemental strand, 13029049 - 13028650
Alignment:
Q  58 cgatggagctttcaccatcttctgaaaatagttcaaatttaggtttaatgcataatgctttggagtgttctcctactgctttgactcttaaatatacaaa 157  Q
    ||||||| ||||| ||| ||||||||| || | ||||||| ||||||||||||||| ||||||||| |||||| ||| || |||||||||||| || |||    
T  13029049 cgatggatctttctccagcttctgaaattactccaaatttgggtttaatgcataattctttggagtcttctcccactactctgactcttaaatttagaaa 13028950  T
Q  158 caaa-gattctattccttcaacaactattctcaacaagcttttatgctgttttgggcccttaattgaatcaaagaccgaacttttagcgaagactaacgg 256  Q
    |||| |||| | ||||||||| | |||||||||||||||||||||||   |||||||||||||||||| || |||| ||||||||||||||||||||||     
T  13028949 caaaagattttgttccttcaatatctattctcaacaagcttttatgcaaatttgggcccttaattgaaacatagactgaacttttagcgaagactaacga 13028850  T
Q  257 cgtcagagttgttttccagaaacgttgtgatgcagaaaatgctgttactcatgttggaaagtatcgttttggatcttcactaaaatgctttcgtctcaag 356  Q
    ||||| |||||||||||||| ||||||||||||||||| || |||||||||||| ||||||||| |||||||||||||||||||| ||||||||||||||    
T  13028849 cgtcaaagttgttttccagacacgttgtgatgcagaaactgttgttactcatgtcggaaagtattgttttggatcttcactaaaaagctttcgtctcaag 13028750  T
Q  357 gttttgcctcagaaaccaaagaaaggtactggaaagcgaggcaggaaaagcaagaaagaatcaagttttgtgcatgatgtttctgcagtttgatgcattg 456  Q
    ||||||||||| ||||||||||||||||| | |||| ||||||| |||||||||||| ||| ||||| || ||||||||||| || ||||||||||||||    
T  13028749 gttttgcctcataaaccaaagaaaggtaccgaaaagagaggcagtaaaagcaagaaacaatgaagttctgagcatgatgtttttgtagtttgatgcattg 13028650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 92 - 456
Target Start/End: Complemental strand, 34971998 - 34971634
Alignment:
Q  92 aaatttaggtttaatgcataatgctttggagtgttctcctactgctttgactcttaaatatacaaacaaagattctattccttcaacaactattctcaac 191  Q
    |||||||| |||||||||||||||||  |||| |||||| ||||||||||||||||||| || ||||||| ||||| | ||||||| | |||||||||||    
T  34971998 aaatttagatttaatgcataatgcttcagagtcttctccaactgctttgactcttaaatttagaaacaaaaattctgtcccttcaatagctattctcaac 34971899  T
Q  192 aagcttttatgctgttttgggcccttaattgaatcaaagaccgaacttttagcgaagactaacggcgtcagagttgttttccagaaacgttgtgatgcag 291  Q
    || |||||||||   ||||||||||||||||| |||||||| |||||||||| ||||||||||||||| | | | |||||||||||||||||||||||||    
T  34971898 aaacttttatgcaaatttgggcccttaattgactcaaagactgaacttttagtgaagactaacggcgtaaaactcgttttccagaaacgttgtgatgcag 34971799  T
Q  292 aaaatgctgttactcatgttggaaagtatcgttttggatcttcactaaaatgctttcgtctcaaggttttgcctcagaaaccaaagaaaggtactggaaa 391  Q
    ||| |||| |||||||||| |||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| ||||||||| || ||||| ||||    
T  34971798 aaactgcttttactcatgtcggaaagtatcgttttggatcttcactaaaaagcttttgtctcaaggttttgcctcataaaccaaaggaatgtactcgaaa 34971699  T
Q  392 gcgaggcaggaaaagcaagaaagaatcaagttttgtgcatgatgtttctgcagtttgatgcattg 456  Q
    | |||| ||||||||||||||| ||||||||| | ||||||||||||||||||||||||||||||    
T  34971698 gagaggtaggaaaagcaagaaacaatcaagttctttgcatgatgtttctgcagtttgatgcattg 34971634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 595 - 693
Target Start/End: Complemental strand, 19718929 - 19718825
Alignment:
Q  595 tactttgattagtttttaatttggctagcatgata------tataagttgcctatcatcctttcaattccaccgaattaatagattaactcttcatattt 688  Q
    ||||||||||| || ||||||||||||||||||||      ||||||||| ||||||| |||| ||||||||||||||  |||||||| ||||| | |||    
T  19718929 tactttgattatttattaatttggctagcatgatagtaatatataagttggctatcatgcttttaattccaccgaattgttagattaaatcttctttttt 19718830  T
Q  689 tcttt 693  Q
    |||||    
T  19718829 tcttt 19718825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 595 - 631
Target Start/End: Complemental strand, 19702108 - 19702072
Alignment:
Q  595 tactttgattagtttttaatttggctagcatgatata 631  Q
    |||||||||||||| ||||||||||||||||||||||    
T  19702108 tactttgattagttattaatttggctagcatgatata 19702072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 192
Target Start/End: Complemental strand, 19643082 - 19643045
Alignment:
Q  155 aaacaaagattctattccttcaacaactattctcaaca 192  Q
    ||||||||||| | ||||||||||||||||||||||||    
T  19643082 aaacaaagattatgttccttcaacaactattctcaaca 19643045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 81; Significance: 1e-37; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 102 - 310
Target Start/End: Complemental strand, 42154280 - 42154065
Alignment:
Q  102 ttaatgcataatgctttggagtgttctcctactgctttgactcttaaatatacaaacaaagattctattccttcaa----caa---ctattctcaacaag 194  Q
    ||||||||||||||| |||||| ||||||||||||| | | |||||||| || ||||||||| | | |||||||||    |||   ||||||||||||||    
T  42154280 ttaatgcataatgctatggagtcttctcctactgctctcattcttaaatttagaaacaaagactatgttccttcaaatttcaatagctattctcaacaag 42154181  T
Q  195 cttttatgctgttttgggcccttaattgaatcaaagaccgaacttttagcgaagactaacggcgtcagagttgttttccagaaacgttgtgatgcagaaa 294  Q
    |||| ||||   |||| | | ||||||||||||||||| ||||| |||||||||||||||| | ||| |||||||||||| |||||||||||||||||||    
T  42154180 ctttaatgcaaatttgagtctttaattgaatcaaagactgaactgttagcgaagactaacgacatcaaagttgttttccataaacgttgtgatgcagaaa 42154081  T
Q  295 atgctgttactcatgt 310  Q
     || ||||| ||||||    
T  42154080 ttgttgttattcatgt 42154065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 343 - 456
Target Start/End: Complemental strand, 42154058 - 42153945
Alignment:
Q  343 gctttcgtctcaaggttttgcctcagaaaccaaagaaaggtactggaaagcgaggcaggaaaagcaagaaagaatcaagttttgtgcatgatgtttctgc 442  Q
    ||||||||||||||||||||||||| ||||||||||| |||||||||||| || ||| | |||| |||||| ||||||||| ||||||||||||||||||    
T  42154058 gctttcgtctcaaggttttgcctcataaaccaaagaagggtactggaaagagaagcaaggaaagtaagaaacaatcaagttatgtgcatgatgtttctgc 42153959  T
Q  443 agtttgatgcattg 456  Q
    ||||||||||||||    
T  42153958 agtttgatgcattg 42153945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 207 - 416
Target Start/End: Complemental strand, 28752530 - 28752318
Alignment:
Q  207 tttgggcccttaattgaatcaaagaccgaacttttagcgaagactaacggcgtcagagttgttttccagaaacgttgtgatgcagaaaatgctgttactc 306  Q
    ||||||||  || ||||||||||||| || ||| ||| || ||||||| | |  |||||||||||| | | ||| ||||||||||||| |||| ||| |     
T  28752530 tttgggccgctagttgaatcaaagactgagcttctagagaggactaaccgtgctagagttgttttcaaaagacgctgtgatgcagaaactgcttttagta 28752431  T
Q  307 atgttggaaagtatcgt---tttggatcttcactaaaatgctttcgtctcaaggttttgcctcagaaaccaaagaaaggtactggaaagcgaggcaggaa 403  Q
     || |||||||||| |    |||||| |||||||| || | |  || |||| | ||||||| |  | |||||||||||| || |||||||||||||| ||    
T  28752430 gtgctggaaagtatagcatatttggaccttcactacaaagttaccgcctcaggattttgccccgtacaccaaagaaaggaacaggaaagcgaggcagaaa 28752331  T
Q  404 aagcaagaaagaa 416  Q
    |||||| ||||||    
T  28752330 aagcaaaaaagaa 28752318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 294
Target Start/End: Complemental strand, 28749584 - 28749497
Alignment:
Q  207 tttgggcccttaattgaatcaaagaccgaacttttagcgaagactaacggcgtcagagttgttttccagaaacgttgtgatgcagaaa 294  Q
    ||||| ||| |||||||||  ||||| |||||  || |||||||||| |||  ||||||||||||||| | ||||||| |||||||||    
T  28749584 tttggacccctaattgaatggaagactgaactgctaccgaagactaaaggcaccagagttgttttccaaagacgttgtaatgcagaaa 28749497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 91 - 174
Target Start/End: Complemental strand, 27120689 - 27120607
Alignment:
Q  91 caaatttaggtttaatgcataatgctttggagtgttctcctactgctttgactcttaaatatacaaacaaagattctattcctt 174  Q
    ||||||| ||||||||||||||||||||| ||| |||||||||| || |||||||||||| || ||| ||| ||| ||||||||    
T  27120689 caaatttgggtttaatgcataatgctttgaagttttctcctact-ctctgactcttaaatttagaaataaaaattgtattcctt 27120607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 76 - 144
Target Start/End: Complemental strand, 27118157 - 27118089
Alignment:
Q  76 cttctgaaaatagttcaaatttaggtttaatgcataatgctttggagtgttctcctactgctttgactc 144  Q
    ||||||||| || | |||||||||||||||||| |||||||||||||| ||||| || |||| ||||||    
T  27118157 cttctgaaattactccaaatttaggtttaatgcgtaatgctttggagtcttctcatattgctctgactc 27118089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 177
Target Start/End: Complemental strand, 27120226 - 27120138
Alignment:
Q  91 caaatttaggtttaatgcataatgctttggagtgttctcctactgctttga--ctcttaaatatacaaacaaagattctattccttcaa 177  Q
    ||||||| ||||||||||||||||||||| ||| |||||| |||||| |    ||||||||| || ||||||||||| | |||||||||    
T  27120226 caaatttgggtttaatgcataatgctttgcagtcttctcccactgctctctatctcttaaatttagaaacaaagattttgttccttcaa 27120138  T

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